Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004149

Physical Location & Seq

Genomic Coordinates Forward (+)

87596444 .. 87598985

Gene Structure 2542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG551200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGATTTGCAAGAAGGAAGATATCTTGCCGAACAATGATTTCCAGCCCATCCGTCCCATCACTGGAGCCTCTTCGCAATCCCCAAGTTTTGATGCTACACCTAATCTCGGAGGTGGAGGAGGATCCACTAGGGCTTGGAACTCCCAAGAGTCCAAGTCCAACACCAATACTCCCATCAGAAATTATGGTTCTGTGGATTCCTTCGAACGTTCAGAAGATGTTGTGGAGAAGGACCGAAATGTTCCTGATGCTACAATTATATCAGAGATTGACCACACCATGAAGAAGTATGCTGATAATTTACTTCAAGTTATGGAAGGTATTAGTGCACGACTAACACAACTTGAGAGCAGAACCCGCCACCTTGAGAATTCTGTTGATGATTTGAAGGTATCTGTGGGAAACAATCATGGAAATGCTGATGGAAAGATGAGACAAATGGAGAATATTCTTAGAGATGTGCAAACAGGAGATGACACAACAGAAACCAATCTAGCTAAAAGAGAGGTTTCTGTTCTTGAAAATGTGTATTGGAAGCAACTTGGAATTATTGCTACTGAGTGGCTCATAATACTTGGATTGCAGATTGCCAAGATTACGGCTTGTTTTTTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

DUF1421

Protein Analysis

205

Amino Acids

22.73

Weight (kDa)

5.04

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01560 AT3G01560 AT5G14540
fragaria_vesca	FvH4_4g26262 FvH4_6g28150
malus_domestica	MD09G1028500.v1.1 MD17G1030000.v1.1
prunus_persica	Prupe.1G550900_v2.0.a1 Prupe.3G290000_v2.0.a1
pyrus_communis	pycom111g02250 pycom17g02740
rosa_chinensis	RchiOBHm_Chr2g0132111 RchiOBHm_Chr5g0029881
rosa_laevigata	RLG00000019227
rosa_multiflora	Rmu_sc0004598.1_g000012 Rmu_ssc0000143.1_g000007
rosa_roxburghii	Rroxscaffold_2G00112390
rosa_rugosa	Rorug02G0169700 Rorug02G0302300 Rorug02G0392200 Rorug05G0511500
rosa_samantha	Rh1BG190500 Rh1DG219300 Rh2AG355300 Rh2BG361500 Rh2CG338900 Rh2DG378100 Rh4DG188100 Rh5BG551200 Rh5CG574100 Rh5DG211600 Rh7BG454200
rosa_wichuraiana	Rw2G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	358
AclI	AACGTT	1 cut(s)	208
AclWI	GGATC	2 cut(s)	117, 130
AcsI	RAATTY	1 cut(s)	370
AfiI	CCNNNNNNNGG	2 cut(s)	62, 107
AgsI	TTSAA	3 cut(s)	308, 388, 521
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	427
Alw44I	GTGCAC	1 cut(s)	327
AlwI	GGATC	2 cut(s)	117, 130
ApaLI	GTGCAC	1 cut(s)	327
ApoI	RAATTY	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	232
AsuII	TTCGAA	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	331
BamHI	GGATCC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	331
BccI	CCATC	4 cut(s)	56, 65, 182, 416
BceAI	ACGGC	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	2 cut(s)	129, 494
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	67, 124
BmsI	GCATC	2 cut(s)	82, 238
BpmI	CTGGAG	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	2 cut(s)	365, 386
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 107
Bse1I	ACTGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	62, 107
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	62, 107
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	39
Bsp119I	TTCGAA	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	1 cut(s)	358
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	67, 124
BspPI	GGATC	2 cut(s)	117, 130
BspT104I	TTCGAA	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	76
BstBI	TTCGAA	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	452, 558
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	232
CviAII	CATG	2 cut(s)	280, 410
CviJI	RGCY	7 cut(s)	46, 68, 134, 497, 565, 602, 615
CviKI_1	RGCY	7 cut(s)	46, 68, 134, 497, 565, 602, 615
DdeI	CTNAG	2 cut(s)	452, 558
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	22
FaeI	CATG	2 cut(s)	283, 413
FaiI	YATR	7 cut(s)	186, 260, 281, 291, 314, 411, 569
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	2 cut(s)	279, 409
FauI	CCCGC	1 cut(s)	365
FokI	GGATG	1 cut(s)	35
FspBI	CTAG	2 cut(s)	129, 494
GsuI	CTGGAG	1 cut(s)	84
Hin1II	CATG	2 cut(s)	283, 413
HinfI	GANTC	2 cut(s)	149, 197
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	4 cut(s)	110, 179, 214, 265
Hpy188III	TCNNGA	2 cut(s)	245, 518
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	5 cut(s)	7, 211, 223, 311, 382
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	4 cut(s)	9, 329, 463, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	357
HpyF3I	CTNAG	2 cut(s)	452, 558
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	283, 413
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	4 cut(s)	48, 56, 258, 453
LweI	GCATC	2 cut(s)	82, 238
MaeI	CTAG	2 cut(s)	129, 494
MaeII	ACGT	1 cut(s)	208
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	4 cut(s)	29, 63, 227, 295
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	5 cut(s)	181, 255, 298, 370, 546
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	5 cut(s)	79, 104, 110, 113, 499
MslI	CAYNNNNRTG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	357
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	2 cut(s)	283, 413
NlaIV	GGNNCC	2 cut(s)	67, 124
NspV	TTCGAA	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	197
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp1406I	AACGTT	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	67, 124
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	414
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	8 cut(s)	103, 115, 211, 322, 366, 393, 499, 510
SfaNI	GCATC	2 cut(s)	82, 238
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	2 cut(s)	344, 365
SmoI	CTYRAG	2 cut(s)	344, 365
Sse9I	AATT	5 cut(s)	181, 255, 298, 370, 546
SsiI	CCGC	1 cut(s)	358
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	2 cut(s)	129, 494
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	5 cut(s)	181, 255, 298, 370, 546
TfiI	GAWTC	1 cut(s)	197
TscAI	CASTG	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	67
VneI	GTGCAC	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	370
XspI	CTAG	2 cut(s)	129, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.