Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000143.1

Orthogroup ID

OG0004149

Physical Location & Seq

Genomic Coordinates Forward (+)

28268 .. 30414

Gene Structure 2147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000143.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1433 bp

atggacaagcagataatggacctgtcacagggatcgtcacagcacaacaacgacttccttgacctgatgaacaattcccaagaggaagagcaccaggtgggtcatggaaatgggatttccaagaaggaagagatcttgccgaactatgatttccagcccatccgtcccatcactggagcctcttcgcaatccccaagttttgatgctacacctaatctcggaggtggaggaggatccactagggcttggaactcccaagagtccaagtccaacaccaatgctcctatcagaaattatggttctgtggattccttcgaacgtgcaaaagatgttgtggagaaggaccgacatgttcctgatgctacaattatatcagagattgaccacaccatgaagaagtatgctgataatttacttcaagttatggaaggtattagtgcacgactaacacaacttgagagcagaacccgccaccttgagaattctgttgatgatttgaaggtatctgtgggaaacaatcatggaaatgctgatggaaagatgagacaaatggagaatattcttagagatgtgcaaataggtgttcaggatttgaaggataagcaatcaatagtagaggctcagctgcagcttgggaagatacagctatcaaatcccaaggtagatcctcaattggaatctcggaatgctctgaatgcagattctgggcataaagtagcctctgctcctcaacaatctcaccaacagcttcctcctgtgaacattccaccatcacttcctgctgtttctccaccaaatgctcctccacagcctatgctccaaagtgtaccaccttcaattcagcatccaaatcagtactctcagaaccagatccctcctgttcctcagcgagaccaatatttccctgctgcacctgttcaaactcaagaagctccaaatcagcaataccaattgcctgcaggtcagcagtcactcccccctcctacggtacctccgcatcaacaatttcagcctaccagtcaaccacagtatcctcagccaccgccccagcttcctcaacagcaccattcacttccacctgttaatccctctcaactccagcctaccctaggtcaccatgctgaagatactccttatgttccttcccagacctacccacccagtcttcgccagccaccttctcagacacctagtgggcctcctccctcccaacaatattatagtccaacatccaatgtatatgagccaccatctagcagacctaattcagggtattcctctgggtaccctccttctgggcttaatgaaccgtatcattatggtggatcaccttctcaatatggtggtacctcctcgatgaaaccacaactctcttctgctactgctcaaagtggaggaagtggttacccacagctcccaacagctagggtatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

DUF1421

Protein Analysis

477

Amino Acids

51.98

Weight (kDa)

5.87

Isoelectric Point (pI)

73.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01560 AT3G01560 AT5G14540
fragaria_vesca	FvH4_4g26262 FvH4_6g28150
malus_domestica	MD09G1028500.v1.1 MD17G1030000.v1.1
prunus_persica	Prupe.1G550900_v2.0.a1 Prupe.3G290000_v2.0.a1
pyrus_communis	pycom111g02250 pycom17g02740
rosa_chinensis	RchiOBHm_Chr2g0132111 RchiOBHm_Chr5g0029881
rosa_laevigata	RLG00000019227
rosa_multiflora	Rmu_sc0004598.1_g000012 Rmu_ssc0000143.1_g000007
rosa_roxburghii	Rroxscaffold_2G00112390
rosa_rugosa	Rorug02G0169700 Rorug02G0302300 Rorug02G0392200 Rorug05G0511500
rosa_samantha	Rh1BG190500 Rh1DG219300 Rh2AG355300 Rh2BG361500 Rh2CG338900 Rh2DG378100 Rh4DG188100 Rh5BG551200 Rh5CG574100 Rh5DG211600 Rh7BG454200
rosa_wichuraiana	Rw2G028850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	950
Acc65I	GGTACC	3 cut(s)	988, 1284, 1346
AccB1I	GGYRCC	3 cut(s)	988, 1284, 1346
AciI	CCGC	3 cut(s)	469, 995, 1043
AclWI	GGATC	6 cut(s)	40, 228, 241, 659, 865, 1333
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	1143
AdeI	CACNNNGTG	2 cut(s)	97, 1193
AfaI	GTAC	5 cut(s)	828, 857, 990, 1286, 1348
AfiI	CCNNNNNNNGG	7 cut(s)	28, 173, 218, 985, 1109, 1268, 1295
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	5 cut(s)	419, 499, 595, 837, 920
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	8 cut(s)	625, 631, 646, 748, 932, 1051, 1414, 1424
AluI	AGCT	8 cut(s)	625, 631, 646, 748, 932, 1051, 1414, 1424
Alw21I	GWGCWC	2 cut(s)	93, 442
Alw26I	GTCTC	2 cut(s)	538, 885
Alw44I	GTGCAC	1 cut(s)	438
AlwI	GGATC	6 cut(s)	40, 228, 241, 659, 865, 1333
AlwNI	CAGNNNCTG	1 cut(s)	704
AoxI	GGCC	1 cut(s)	1196
ApaLI	GTGCAC	1 cut(s)	438
ApeKI	GCWGC	3 cut(s)	625, 628, 908
ApoI	RAATTY	1 cut(s)	481
Asp718I	GGTACC	3 cut(s)	988, 1284, 1346
AspA2I	CCTAGG	1 cut(s)	1108
AspS9I	GGNCC	3 cut(s)	19, 343, 1196
AsuHPI	GGTGA	3 cut(s)	731, 1106, 1320
AsuII	TTCGAA	1 cut(s)	315
AvaII	GGWCC	2 cut(s)	19, 343
AvrII	CCTAGG	1 cut(s)	1108
BaeGI	GKGCMC	1 cut(s)	442
BaeI	ACNNNNGTAYC	2 cut(s)	1013, 1046
BamHI	GGATCC	1 cut(s)	233
BanI	GGYRCC	3 cut(s)	988, 1284, 1346
BbsI	GAAGAC	1 cut(s)	1157
Bbv12I	GWGCWC	2 cut(s)	93, 442
BbvCI	CCTCAGC	2 cut(s)	885, 1035
BbvI	GCAGC	3 cut(s)	612, 640, 895
BccI	CCATC	5 cut(s)	167, 176, 527, 778, 1258
BciT130I	CCWGG	1 cut(s)	95
BciVI	GTATCC	1 cut(s)	1041
BcoDI	GTCTC	2 cut(s)	538, 885
BfaI	CTAG	5 cut(s)	240, 1109, 1191, 1254, 1425
BfmI	CTRYAG	2 cut(s)	626, 957
BfuAI	ACCTGC	1 cut(s)	950
BfuI	GTATCC	1 cut(s)	1041
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	3 cut(s)	626, 629, 909
BlnI	CCTAGG	1 cut(s)	1108
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	3 cut(s)	627, 630, 910
BmcAI	AGTACT	1 cut(s)	857
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	2 cut(s)	19, 343
BmgT120I	GGNCC	3 cut(s)	19, 343, 1196
BmiI	GGNNCC	5 cut(s)	178, 235, 990, 1286, 1348
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	1 cut(s)	1155
BmsI	GCATC	4 cut(s)	193, 349, 853, 1006
BmuI	ACTGGG	1 cut(s)	1155
BpiI	GAAGAC	1 cut(s)	1157
BpmI	CTGGAG	2 cut(s)	195, 1082
Bpu10I	CCTNAGC	2 cut(s)	885, 1035
Bpu1102I	GCTNAGC	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	315
BpuEI	CTTGAG	3 cut(s)	476, 497, 909
BsaI	GGTCTC	1 cut(s)	885
BsaJI	CCNNGG	2 cut(s)	657, 1108
BsaXI	ACNNNNNCTCC	4 cut(s)	265, 295, 976, 1006
Bsc4I	CCNNNNNNNGG	7 cut(s)	28, 173, 218, 985, 1109, 1268, 1295
Bse1I	ACTGG	3 cut(s)	178, 1017, 1161
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	657, 1108
BseGI	GGATG	3 cut(s)	159, 844, 1229
BseLI	CCNNNNNNNGG	7 cut(s)	28, 173, 218, 985, 1109, 1268, 1295
BseMII	CTCAG	5 cut(s)	635, 875, 899, 1049, 1196
BseNI	ACTGG	3 cut(s)	178, 1017, 1161
BseRI	GAGGAG	5 cut(s)	243, 717, 792, 1191, 1342
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	3 cut(s)	612, 640, 895
BseYI	CCCAGC	1 cut(s)	1047
BsgI	GTGCAG	1 cut(s)	894
BshFI	GGCC	1 cut(s)	1198
BshNI	GGYRCC	3 cut(s)	988, 1284, 1346
BsiHKAI	GWGCWC	2 cut(s)	93, 442
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	7 cut(s)	28, 173, 218, 985, 1109, 1268, 1295
BsmAI	GTCTC	2 cut(s)	538, 885
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	2 cut(s)	691, 700
BsnI	GGCC	1 cut(s)	1198
Bso31I	GGTCTC	1 cut(s)	885
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	93, 442
Bsp143I	GATC	6 cut(s)	32, 132, 233, 664, 870, 1325
Bsp1720I	GCTNAGC	1 cut(s)	621
BspACI	CCGC	3 cut(s)	469, 995, 1043
BspANI	GGCC	1 cut(s)	1198
BspCNI	CTCAG	5 cut(s)	634, 874, 898, 1048, 1195
BspLI	GGNNCC	5 cut(s)	178, 235, 990, 1286, 1348
BspMAI	CTGCAG	2 cut(s)	630, 961
BspMI	ACCTGC	1 cut(s)	950
BspPI	GGATC	6 cut(s)	40, 228, 241, 659, 865, 1333
BspQI	GCTCTTC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	315
BspT107I	GGYRCC	3 cut(s)	988, 1284, 1346
BspTNI	GGTCTC	1 cut(s)	885
BsrI	ACTGG	3 cut(s)	178, 1017, 1161
BssECI	CCNNGG	2 cut(s)	657, 1108
BssMI	GATC	6 cut(s)	32, 132, 233, 664, 870, 1325
BssT1I	CCWWGG	2 cut(s)	657, 1108
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	3 cut(s)	988, 1029, 1311
Bst6I	CTCTTC	4 cut(s)	81, 123, 187, 1378
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	957, 1172
BstDEI	CTNAG	6 cut(s)	563, 621, 861, 885, 1035, 1182
BstEII	GGTNACC	2 cut(s)	1112, 1403
BstENI	CCTNNNNNAGG	3 cut(s)	26, 1107, 1266
BstF5I	GGATG	3 cut(s)	159, 844, 1229
BstKTI	GATC	6 cut(s)	35, 135, 236, 667, 873, 1328
BstMAI	GTCTC	2 cut(s)	538, 885
BstMBI	GATC	6 cut(s)	32, 132, 233, 664, 870, 1325
BstMWI	GCNNNNNNNGC	2 cut(s)	468, 695
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	353
BstPI	GGTNACC	2 cut(s)	1112, 1403
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	2 cut(s)	626, 957
BstSLI	GKGCMC	1 cut(s)	442
BstV1I	GCAGC	3 cut(s)	612, 640, 895
BstV2I	GAAGAC	1 cut(s)	1157
BstX2I	RGATCY	4 cut(s)	132, 233, 664, 870
BstYI	RGATCY	4 cut(s)	132, 233, 664, 870
BsuI	GTATCC	1 cut(s)	1041
BsuRI	GGCC	1 cut(s)	1198
BtsCI	GGATG	3 cut(s)	159, 844, 1229
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	950
Cac8I	GCNNGC	2 cut(s)	957, 1172
CaiI	CAGNNNCTG	1 cut(s)	704
Cfr13I	GGNCC	3 cut(s)	19, 343, 1196
CsiI	ACCWGGT	1 cut(s)	93
Csp6I	GTAC	5 cut(s)	827, 856, 989, 1285, 1347
CviAII	CATG	5 cut(s)	104, 350, 391, 521, 1118
CviQI	GTAC	5 cut(s)	827, 856, 989, 1285, 1347
DdeI	CTNAG	6 cut(s)	563, 621, 861, 885, 1035, 1182
DpnI	GATC	6 cut(s)	34, 134, 235, 666, 872, 1327
DpnII	GATC	6 cut(s)	32, 132, 233, 664, 870, 1325
DraIII	CACNNNGTG	2 cut(s)	97, 1193
Eam1104I	CTCTTC	4 cut(s)	81, 123, 187, 1378
EarI	CTCTTC	4 cut(s)	81, 123, 187, 1378
Eco130I	CCWWGG	2 cut(s)	657, 1108
Eco31I	GGTCTC	1 cut(s)	885
Eco47I	GGWCC	2 cut(s)	19, 343
Eco57I	CTGAAG	1 cut(s)	1143
Eco91I	GGTNACC	2 cut(s)	1112, 1403
EcoNI	CCTNNNNNAGG	3 cut(s)	26, 1107, 1266
EcoO65I	GGTNACC	2 cut(s)	1112, 1403
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	2 cut(s)	657, 1108
ErhI	CCWWGG	2 cut(s)	657, 1108
FaeI	CATG	5 cut(s)	107, 353, 394, 524, 1121
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	5 cut(s)	103, 349, 390, 520, 1117
FauI	CCCGC	1 cut(s)	476
Fnu4HI	GCNGC	3 cut(s)	626, 629, 909
FokI	GGATG	3 cut(s)	146, 831, 1216
Fsp4HI	GCNGC	3 cut(s)	626, 629, 909
FspBI	CTAG	5 cut(s)	240, 1109, 1191, 1254, 1425
GluI	GCNGC	3 cut(s)	626, 629, 909
GsaI	CCCAGC	1 cut(s)	1051
GsuI	CTGGAG	2 cut(s)	195, 1082
HaeIII	GGCC	1 cut(s)	1198
Hin1II	CATG	5 cut(s)	107, 353, 394, 524, 1121
HincII	GTYRAC	1 cut(s)	1022
HindII	GTYRAC	1 cut(s)	1022
HinfI	GANTC	4 cut(s)	260, 308, 677, 701
HphI	GGTGA	3 cut(s)	731, 1106, 1320
Hpy166II	GTNNAC	4 cut(s)	440, 760, 827, 1022
Hpy188I	TCNGA	7 cut(s)	221, 290, 376, 684, 693, 864, 1185
Hpy188III	TCNNGA	3 cut(s)	356, 587, 926
Hpy8I	GTNNAC	4 cut(s)	440, 760, 827, 1022
HpyCH4III	ACNGT	3 cut(s)	988, 1029, 1311
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	7 cut(s)	323, 440, 574, 628, 698, 911, 959
HpyF10VI	GCNNNNNNNGC	2 cut(s)	468, 695
HpyF3I	CTNAG	6 cut(s)	563, 621, 861, 885, 1035, 1182
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	5 cut(s)	107, 353, 394, 524, 1121
KpnI	GGTACC	3 cut(s)	992, 1288, 1350
Kzo9I	GATC	6 cut(s)	32, 132, 233, 664, 870, 1325
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	7 cut(s)	176, 286, 730, 805, 822, 937, 1419
Lsp1109I	GCAGC	3 cut(s)	612, 640, 895
LweI	GCATC	4 cut(s)	193, 349, 853, 1006
MabI	ACCWGGT	1 cut(s)	93
MaeI	CTAG	5 cut(s)	240, 1109, 1191, 1254, 1425
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	5 cut(s)	24, 36, 969, 1112, 1403
MalI	GATC	6 cut(s)	34, 134, 235, 666, 872, 1327
MboI	GATC	6 cut(s)	32, 132, 233, 664, 870, 1325
MboII	GAAGA	8 cut(s)	98, 140, 174, 406, 649, 1136, 1157, 1365
MfeI	CAATTG	2 cut(s)	671, 950
MflI	RGATCY	4 cut(s)	132, 233, 664, 870
MhlI	GDGCHC	2 cut(s)	93, 442
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	2 cut(s)	294, 1250
MseI	TTAA	2 cut(s)	1083, 1302
MslI	CAYNNNNRTG	3 cut(s)	108, 525, 1320
MspA1I	CMGCKG	1 cut(s)	625
MspR9I	CCNGG	1 cut(s)	95
MunI	CAATTG	2 cut(s)	671, 950
Mva1269I	GAATGC	2 cut(s)	691, 700
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	468, 695
NdeII	GATC	6 cut(s)	32, 132, 233, 664, 870, 1325
NlaIII	CATG	5 cut(s)	107, 353, 394, 524, 1121
NlaIV	GGNNCC	5 cut(s)	178, 235, 990, 1286, 1348
NmuCI	GTSAC	4 cut(s)	24, 36, 969, 1112
NspI	RCATGY	1 cut(s)	353
NspV	TTCGAA	1 cut(s)	315
PciI	ACATGT	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	81
PctI	GAATGC	2 cut(s)	691, 700
PfeI	GAWTC	3 cut(s)	308, 677, 701
PkrI	GCNGC	3 cut(s)	627, 630, 910
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PscI	ACATGT	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	93
PspEI	GGTNACC	2 cut(s)	1112, 1403
PspFI	CCCAGC	1 cut(s)	1047
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	5 cut(s)	178, 235, 990, 1286, 1348
PspPI	GGNCC	3 cut(s)	19, 343, 1196
PstI	CTGCAG	2 cut(s)	630, 961
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	4 cut(s)	132, 233, 664, 870
PvuII	CAGCTG	1 cut(s)	625
RsaI	GTAC	5 cut(s)	828, 857, 990, 1286, 1348
RsaNI	GTAC	5 cut(s)	827, 856, 989, 1285, 1347
RseI	CAYNNNNRTG	3 cut(s)	108, 525, 1320
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	1083, 1302
SatI	GCNGC	3 cut(s)	626, 629, 909
Sau3AI	GATC	6 cut(s)	32, 132, 233, 664, 870, 1325
Sau96I	GGNCC	3 cut(s)	19, 343, 1196
SbfI	CCTGCAGG	1 cut(s)	961
ScaI	AGTACT	1 cut(s)	857
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	95
SdaI	CCTGCAGG	1 cut(s)	961
SduI	GDGCHC	2 cut(s)	93, 442
SexAI	ACCWGGT	1 cut(s)	93
SfaNI	GCATC	4 cut(s)	193, 349, 853, 1006
SfcI	CTRYAG	2 cut(s)	626, 957
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	2 cut(s)	19, 343
SmiMI	CAYNNNNRTG	3 cut(s)	108, 525, 1320
SmlI	CTYRAG	3 cut(s)	455, 476, 924
SmoI	CTYRAG	3 cut(s)	455, 476, 924
Sse8387I	CCTGCAGG	1 cut(s)	961
SsiI	CCGC	3 cut(s)	469, 995, 1043
SspI	AATATT	3 cut(s)	559, 899, 1217
SspMI	CTAG	5 cut(s)	240, 1109, 1191, 1254, 1425
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	2 cut(s)	657, 1108
TaaI	ACNGT	3 cut(s)	988, 1029, 1311
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	315, 1355
TaqII	GACCGA	1 cut(s)	360
TatI	WGTACW	1 cut(s)	855
TfiI	GAWTC	3 cut(s)	308, 677, 701
Tru1I	TTAA	2 cut(s)	1083, 1302
Tru9I	TTAA	2 cut(s)	1083, 1302
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	4 cut(s)	24, 36, 969, 1112
TseI	GCWGC	3 cut(s)	625, 628, 908
Tsp45I	GTSAC	4 cut(s)	24, 36, 969, 1112
TspDTI	ATGAA	4 cut(s)	83, 407, 1320, 1373
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	178
VneI	GTGCAC	1 cut(s)	438
VpaK11BI	GGWCC	2 cut(s)	19, 343
XagI	CCTNNNNNAGG	3 cut(s)	26, 1107, 1266
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XmaJI	CCTAGG	1 cut(s)	1108
XspI	CTAG	5 cut(s)	240, 1109, 1191, 1254, 1425
ZrmI	AGTACT	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.