Rorug02G0302300

UBA-like domain (DUF1421)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004149
Physical Location & Seq
Reverse (-)
33756768 .. 33758829
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0302300.1

Sequence Viewer

Length: 300 bp
ATGGGTTTCCGGCTCCCTAGAATTTCAAACACCAAGAGAAGCCTTATTCGATCACTTTCTAATGGAAACCAGACAGCTTCAAAGACCTTAGAAATCCCGAAAGGCTATTTTGCAGTCTATGTTGGAGAGAGCCAGAAGAAGCGATTTGTGATTCCAATATCATACTTGAACCAACCTTCATTTATGGATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACGATCATCCCATGGGCGGCATCACAATTCCTTGCAGTGAGGACACCTTCCTTGATCTCACTTCCAGCTTTAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
DUF1421

Protein Analysis

99

Amino Acids

11.1

Weight (kDa)

6.55

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 12 - 95 6.4e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 237
AcsI RAATTY 2 cut(s) 21, 212
AcuI CTGAAG 1 cut(s) 225
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 3 cut(s) 27, 81, 169
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 3 cut(s) 77, 203, 288
AluI AGCT 3 cut(s) 77, 203, 288
ApoI RAATTY 2 cut(s) 21, 212
BciVI GTATCC 1 cut(s) 212
BfaI CTAG 1 cut(s) 18
BfuI GTATCC 1 cut(s) 212
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 14
BmsI GCATC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 236
Bsp143I GATC 3 cut(s) 50, 223, 274
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 3 cut(s) 50, 223, 274
BssT1I CCWWGG 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 88, 194
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 3 cut(s) 53, 226, 277
BstMBI GATC 3 cut(s) 50, 223, 274
BsuI GTATCC 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
CviAII CATG 1 cut(s) 232
CviJI RGCY 7 cut(s) 13, 42, 77, 105, 132, 203, 288
CviKI_1 RGCY 7 cut(s) 13, 42, 77, 105, 132, 203, 288
DdeI CTNAG 2 cut(s) 88, 194
DpnI GATC 3 cut(s) 52, 225, 276
DpnII GATC 3 cut(s) 50, 223, 274
Eco130I CCWWGG 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 1 cut(s) 235
FaiI YATR 4 cut(s) 120, 163, 185, 233
FatI CATG 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 238
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 1 cut(s) 18
GluI GCNGC 1 cut(s) 238
HapII CCGG 1 cut(s) 10
Hin1II CATG 1 cut(s) 235
HinfI GANTC 2 cut(s) 151, 196
HpaII CCGG 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 186, 277
HpyCH4V TGCA 2 cut(s) 113, 255
HpyF3I CTNAG 2 cut(s) 88, 194
Hsp92II CATG 1 cut(s) 235
Kzo9I GATC 3 cut(s) 50, 223, 274
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 3 cut(s) 23, 83, 146
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 18
MalI GATC 3 cut(s) 52, 225, 276
MboI GATC 3 cut(s) 50, 223, 274
MboII GAAGA 3 cut(s) 148, 218, 221
MluCI AATT 3 cut(s) 21, 212, 246
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 1 cut(s) 253
MspI CCGG 1 cut(s) 10
NcoI CCATGG 1 cut(s) 231
NdeII GATC 3 cut(s) 50, 223, 274
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 239
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 14
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 3 cut(s) 50, 223, 274
SchI GAGTC 1 cut(s) 205
SetI ASST 6 cut(s) 79, 89, 178, 205, 269, 290
SfaNI GCATC 1 cut(s) 249
Sse9I AATT 3 cut(s) 21, 212, 246
SsiI CCGC 1 cut(s) 237
SspMI CTAG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 231
TaqI TCGA 1 cut(s) 49
TasI AATT 3 cut(s) 21, 212, 246
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 1 cut(s) 151
TscAI CASTG 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 262
XapI RAATTY 2 cut(s) 21, 212
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.