Rorug05G0511500

UBA-like domain (DUF1421)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004149
Physical Location & Seq
Forward (+)
69526638 .. 69527403
766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0511500.1

Sequence Viewer

Length: 411 bp
ATGGCCCGTACCAAGCAGACTGCCCGGAAGTCCACCGGAGGAAAGGCCCCGCGCAAGCAGCTGGCGACCAAGGCTGCCCGGAAGTCGGCTCCGGCGACCGGAGGAGTGAAGAAGCCCCATCGCTTCAGGCCGGGAACTGTGGCGCTGAGGGAGATCAGGAAGTATCAGAAGAGCACGGAGCTTCTGATCCGCAAGCTTCCCTTCCAGAGGCTGGTGAGGGAGATTGCTCAGGATTTCAAGACTGATCTTCGCTTCCAGAGCAGCGCTGTGGCGGCGCTTCAGGAGGCGGCGGAGGCTTACTTGGTGGGTTTGTTTGAGGATACTAATCTGTGTGCGATTCATGCCAAGAGGGTTACCATTATGCCCAAGGATATTCAGCTTGCGAGGAGGATTAGGGGTGAGAGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
DUF1421

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

11.29

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 44 - 131 8.7e-39 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AccII CGCG 1 cut(s) 52
AciI CCGC 5 cut(s) 50, 190, 272, 287, 290
AclWI GGATC 1 cut(s) 181
AcuI CTGAAG 2 cut(s) 109, 263
AfaI GTAC 1 cut(s) 10
AfeI AGCGCT 1 cut(s) 265
AfiI CCNNNNNNNGG 4 cut(s) 85, 98, 207, 211
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 5 cut(s) 61, 181, 196, 379, 407
AluI AGCT 5 cut(s) 61, 181, 196, 379, 407
Alw21I GWGCWC 1 cut(s) 176
AlwI GGATC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 211
Aor51HI AGCGCT 1 cut(s) 265
AoxI GGCC 3 cut(s) 3, 45, 128
ApeKI GCWGC 3 cut(s) 58, 74, 261
AspLEI GCGC 4 cut(s) 54, 145, 266, 277
AspS9I GGNCC 2 cut(s) 4, 46
AsuC2I CCSGG 3 cut(s) 25, 79, 132
AsuHPI GGTGA 2 cut(s) 226, 410
Bbv12I GWGCWC 1 cut(s) 176
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 3 cut(s) 61, 70, 273
BccI CCATC 1 cut(s) 126
BciVI GTATCC 1 cut(s) 313
BcnI CCSGG 3 cut(s) 25, 79, 132
BfoI RGCGCY 3 cut(s) 146, 267, 278
BfuI GTATCC 1 cut(s) 313
BisI GCNGC 5 cut(s) 59, 75, 262, 273, 288
BlsI GCNGC 5 cut(s) 60, 76, 263, 274, 289
Bme1390I CCNGG 3 cut(s) 25, 79, 132
BmgT120I GGNCC 2 cut(s) 4, 46
BmiI GGNNCC 2 cut(s) 48, 90
BmrFI CCNGG 3 cut(s) 25, 79, 132
Bpu10I CCTNAGC 2 cut(s) 146, 228
BpuMI CCSGG 3 cut(s) 25, 79, 132
BsaBI GATNNNNATC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 69, 366
BsaWI WCCGGW 2 cut(s) 35, 98
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 98, 207, 211
Bse8I GATNNNNATC 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 69, 366
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 4 cut(s) 85, 98, 207, 211
BseMII CTCAG 2 cut(s) 137, 242
BseRI GAGGAG 2 cut(s) 117, 400
BseXI GCAGC 3 cut(s) 61, 70, 273
Bsh1236I CGCG 1 cut(s) 52
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 3 cut(s) 5, 47, 130
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 176
BsiSI CCGG 6 cut(s) 25, 36, 79, 92, 99, 131
BslI CCNNNNNNNGG 4 cut(s) 85, 98, 207, 211
BsnI GGCC 3 cut(s) 5, 47, 130
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 3 cut(s) 153, 186, 244
BspACI CCGC 5 cut(s) 50, 190, 272, 287, 290
BspANI GGCC 3 cut(s) 5, 47, 130
BspCNI CTCAG 2 cut(s) 138, 241
BspFNI CGCG 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 48, 90
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 69, 366
BssMI GATC 3 cut(s) 153, 186, 244
BssT1I CCWWGG 2 cut(s) 69, 366
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 164
BstC8I GCNNGC 4 cut(s) 56, 63, 194, 381
BstDEI CTNAG 3 cut(s) 146, 228, 408
BstEII GGTNACC 1 cut(s) 352
BstENI CCTNNNNNAGG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 52
BstH2I RGCGCY 3 cut(s) 146, 267, 278
BstHHI GCGC 4 cut(s) 54, 145, 266, 277
BstKTI GATC 3 cut(s) 156, 189, 247
BstMBI GATC 3 cut(s) 153, 186, 244
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 6 cut(s) 58, 71, 258, 272, 293, 341
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 3 cut(s) 23, 77, 130
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 3 cut(s) 61, 70, 273
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 3 cut(s) 5, 47, 130
BtgZI GCGATG 1 cut(s) 104
Cac8I GCNNGC 4 cut(s) 56, 63, 194, 381
CaiI CAGNNNCTG 1 cut(s) 211
CfoI GCGC 4 cut(s) 54, 145, 266, 277
Cfr13I GGNCC 2 cut(s) 4, 46
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 341
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 3 cut(s) 146, 228, 408
DpnI GATC 3 cut(s) 155, 188, 246
DpnII GATC 3 cut(s) 153, 186, 244
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 69, 366
Eco47III AGCGCT 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 109, 263
Eco91I GGTNACC 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 69, 366
ErhI CCWWGG 2 cut(s) 69, 366
FaeI CATG 1 cut(s) 344
FaiI YATR 2 cut(s) 342, 362
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 1 cut(s) 340
FauI CCCGC 1 cut(s) 57
Fnu4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
Fsp4HI GCNGC 5 cut(s) 59, 75, 262, 273, 288
GlaI GCGC 4 cut(s) 53, 144, 265, 276
GluI GCNGC 5 cut(s) 59, 75, 262, 273, 288
HaeII RGCGCY 3 cut(s) 146, 267, 278
HaeIII GGCC 3 cut(s) 5, 47, 130
HapII CCGG 6 cut(s) 25, 36, 79, 92, 99, 131
HhaI GCGC 4 cut(s) 54, 145, 266, 277
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 4 cut(s) 52, 143, 264, 275
HinP1I GCGC 4 cut(s) 52, 143, 264, 275
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 1 cut(s) 337
HpaII CCGG 6 cut(s) 25, 36, 79, 92, 99, 131
HphI GGTGA 2 cut(s) 226, 410
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 168, 186
Hpy188III TCNNGA 6 cut(s) 157, 205, 230, 238, 256, 281
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 6 cut(s) 58, 71, 258, 272, 293, 341
HpyF3I CTNAG 3 cut(s) 146, 228, 408
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 4 cut(s) 52, 143, 264, 275
Kzo9I GATC 3 cut(s) 153, 186, 244
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 94, 178
Lsp1109I GCAGC 3 cut(s) 61, 70, 273
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 155, 188, 246
MboI GATC 3 cut(s) 153, 186, 244
MboII GAAGA 3 cut(s) 121, 181, 239
MhlI GDGCHC 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 6 cut(s) 25, 36, 79, 92, 99, 131
MspR9I CCNGG 3 cut(s) 25, 79, 132
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 6 cut(s) 58, 71, 258, 272, 293, 341
NciI CCSGG 3 cut(s) 25, 79, 132
NdeII GATC 3 cut(s) 153, 186, 244
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 2 cut(s) 48, 90
PciSI GCTCTTC 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PfeI GAWTC 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 5 cut(s) 60, 76, 263, 274, 289
PspEI GGTNACC 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 48, 90
PspPI GGNCC 2 cut(s) 4, 46
PstNI CAGNNNCTG 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 5 cut(s) 59, 75, 262, 273, 288
Sau3AI GATC 3 cut(s) 153, 186, 244
Sau96I GGNCC 2 cut(s) 4, 46
ScrFI CCNGG 3 cut(s) 25, 79, 132
SduI GDGCHC 1 cut(s) 176
SetI ASST 5 cut(s) 63, 183, 198, 381, 409
SsiI CCGC 5 cut(s) 50, 190, 272, 287, 290
StyD4I CCNGG 3 cut(s) 23, 77, 130
StyI CCWWGG 2 cut(s) 69, 366
TaaI ACNGT 1 cut(s) 139
TauI GCSGC 2 cut(s) 275, 290
TfiI GAWTC 1 cut(s) 337
TseI GCWGC 3 cut(s) 58, 74, 261
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 191
Van91I CCANNNNNTGG 1 cut(s) 211
XagI CCTNNNNNAGG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.