Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001995

Physical Location & Seq

Genomic Coordinates Forward (+)

8074920 .. 8075845

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G141700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAGTTCTCTATTTCACCTGTTGTGCGTGTTGCTGTTCAATGCAAGGTCGCTTCTGACCTTTCCAAACTTTTTGAAGATTTCAAACGTCTGGCCAAGTCTGATCCTATGGTTGTCTGTTCCATTGAGGAATCTGGAGAGCACATTATTGCTGGTGCTGGTGAACACCATCTTGAGATTTCTGAGATTATAAAATCTGACCCTGTTGTGTCTTTCCGTGAGACTGTCCTGGAGAAGTCTAGTCGTACTTTGATGAGCAAGTCATCCAACAAGCATAACCGTCTGTATATGGAAGCTCGACCCTTGGAGGAAGATGATCCCAAAATTCGTTCCAAAATATGTGTAAGGGGAGTTCAGTACCTTAATGAAATTAAGGACTCTGTTGTTGCTGGTTTCCAGTGGGCTTCAAAGGAAGGTGCATCGGCGGAAGAAAACATGAGGGGTATTTGCTTTGAAGTTTGTGATGTGGTTCTTCATGCTGATGCAATCCACAGAGGAGGTGGTCAGGTCATTCCCACTGCTAGGAGGGTCATCTATGCTTCCCAGCTCACTGCCAAGCCAAGGCTCCTTGAACCAGTATATCTCGTCGATATCCAAGCTCCGGAGCAGGCTCTTGGTGGCATCTACTGTGTTCTTAACCAGAAACGTGGGCATGTGTTTGAGGAAATGCAGAGGCCTGGTACCCCATTCTACAACATCAAGGCCTACCTCCCTGTCATTGAGTCTTTCGAGTTCTCCGTTCAGTTGAGGGCTGCGACTTCAGGCCAGGCTTTCCCACAATGTGTGCTTGATCATTGGGAGATGATGTCGTCTGACCAGGCTGCACAGCTTGTTACAGATATCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04152 ko04921 map04152 map04921

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

283

Amino Acids

31.53

Weight (kDa)

6.1

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56070 AT1G56070 AT1G56070 AT3G12915
fragaria_vesca	FvH4_3g15630 FvH4_3g15640
malus_domestica	MD05G1220800.v1.1 MD05G1221000.v1.1 MD10G1203200.v1.1 MD10G1203300.v1.1
prunus_persica	Prupe.4G138700_v2.0.a1 Prupe.4G138700_v2.0.a1 Prupe.4G138700_v2.0.a1 Prupe.4G138700_v2.0.a1 Prupe.4G138900_v2.0.a1 Prupe.4G138900_v2.0.a1 Prupe.4G138900_v2.0.a1 Prupe.4G141700_v2.0.a1
pyrus_communis	pycom05g20420 pycom05g20430 pycom10g17380 pycom10g17390
rosa_chinensis	RchiOBHm_Chr5g0026251 RchiOBHm_Chr5g0026301 RchiOBHm_Chr6g0257391
rosa_laevigata	RLG00000032918 RLG00000032921
rosa_multiflora	Rmu_sc0000632.1_g000007 Rmu_sc0009978.1_g000014
rosa_roxburghii	Rroxscaffold_1G00053060 Rroxscaffold_3G00244570
rosa_rugosa	Rorug05G0091900 Rorug05G0092100 Rorug07G0150400
rosa_samantha	Rh5AG184900 Rh5BG181800 Rh5BG182000 Rh5CG201000 Rh5CG201300 Rh5DG183500 Rh5DG183800 Rh7BG278900 Rh7BG279100
rosa_wichuraiana	Rw5G016770 Rw5G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
Acc65I	GGTACC	1 cut(s)	680
AccB1I	GGYRCC	1 cut(s)	680
AccIII	TCCGGA	1 cut(s)	601
AciI	CCGC	2 cut(s)	425, 844
AclWI	GGATC	2 cut(s)	98, 311
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	744
AdeI	CACNNNGTG	1 cut(s)	782
AfaI	GTAC	3 cut(s)	247, 359, 682
AfiI	CCNNNNNNNGG	3 cut(s)	522, 561, 601
AgsI	TTSAA	6 cut(s)	41, 77, 85, 408, 455, 572
AjnI	CCWGG	4 cut(s)	228, 676, 765, 816
AluBI	AGCT	4 cut(s)	296, 547, 599, 829
AluI	AGCT	4 cut(s)	296, 547, 599, 829
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	2 cut(s)	98, 311
Aor13HI	TCCGGA	1 cut(s)	601
AoxI	GGCC	4 cut(s)	93, 674, 702, 763
ApeKI	GCWGC	2 cut(s)	752, 821
ApoI	RAATTY	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	680
AsuHPI	GGTGA	2 cut(s)	9, 173
BalI	TGGCCA	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	739, 808
BccI	CCATC	1 cut(s)	177
BciT130I	CCWGG	4 cut(s)	230, 678, 767, 818
BclI	TGATCA	1 cut(s)	790
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	3 cut(s)	240, 522, 847
BisI	GCNGC	2 cut(s)	753, 822
BlsI	GCNGC	2 cut(s)	754, 823
Bme1390I	CCNGG	4 cut(s)	230, 678, 767, 818
BmiI	GGNNCC	2 cut(s)	566, 682
BmrFI	CCNGG	4 cut(s)	230, 678, 767, 818
BmsI	GCATC	3 cut(s)	428, 472, 630
BpmI	CTGGAG	2 cut(s)	156, 251
BpuEI	CTTGAG	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	303, 560
BsaWI	WCCGGW	1 cut(s)	601
BsaXI	ACNNNNNCTCC	2 cut(s)	791, 821
Bsc4I	CCNNNNNNNGG	3 cut(s)	522, 561, 601
Bse1I	ACTGG	2 cut(s)	397, 575
BseAI	TCCGGA	1 cut(s)	601
BseBI	CCWGG	4 cut(s)	230, 678, 767, 818
BseDI	CCNNGG	2 cut(s)	303, 560
BseGI	GGATG	1 cut(s)	263
BseLI	CCNNNNNNNGG	3 cut(s)	522, 561, 601
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	2 cut(s)	397, 575
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	2 cut(s)	739, 808
BseYI	CCCAGC	1 cut(s)	543
BsgI	GTGCAG	1 cut(s)	807
BshFI	GGCC	4 cut(s)	95, 676, 704, 765
BshNI	GGYRCC	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	602
BslI	CCNNNNNNNGG	3 cut(s)	522, 561, 601
BsmAI	GTCTC	1 cut(s)	215
BsnI	GGCC	4 cut(s)	95, 676, 704, 765
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp13I	TCCGGA	1 cut(s)	601
Bsp143I	GATC	3 cut(s)	103, 316, 790
BspACI	CCGC	2 cut(s)	425, 844
BspANI	GGCC	4 cut(s)	95, 676, 704, 765
BspCNI	CTCAG	1 cut(s)	175
BspEI	TCCGGA	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	566, 682
BspPI	GGATC	2 cut(s)	98, 311
BspT107I	GGYRCC	1 cut(s)	680
BsrI	ACTGG	2 cut(s)	397, 575
BssECI	CCNNGG	2 cut(s)	303, 560
BssMI	GATC	3 cut(s)	103, 316, 790
BssT1I	CCWWGG	2 cut(s)	303, 560
Bst2UI	CCWGG	4 cut(s)	230, 678, 767, 818
Bst4CI	ACNGT	3 cut(s)	226, 281, 629
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	263
BstKTI	GATC	3 cut(s)	106, 319, 793
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	3 cut(s)	103, 316, 790
BstNI	CCWGG	4 cut(s)	230, 678, 767, 818
BstNSI	RCATGY	1 cut(s)	656
BstSCI	CCNGG	4 cut(s)	228, 676, 765, 816
BstV1I	GCAGC	2 cut(s)	739, 808
BstXI	CCANNNNNNTGG	1 cut(s)	647
BsuRI	GGCC	4 cut(s)	95, 676, 704, 765
BtsCI	GGATG	1 cut(s)	263
BtsI	GCAGTG	2 cut(s)	516, 549
BtsIMutI	CAGTG	3 cut(s)	404, 516, 549
Cac8I	GCNNGC	1 cut(s)	609
Csp6I	GTAC	3 cut(s)	246, 358, 681
CviAII	CATG	3 cut(s)	436, 476, 653
CviQI	GTAC	3 cut(s)	246, 358, 681
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	3 cut(s)	105, 318, 792
DpnII	GATC	3 cut(s)	103, 316, 790
DraIII	CACNNNGTG	1 cut(s)	782
EaeI	YGGCCR	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	440
Eco130I	CCWWGG	2 cut(s)	303, 560
Eco147I	AGGCCT	2 cut(s)	676, 704
Eco32I	GATATC	2 cut(s)	592, 841
Eco57I	CTGAAG	1 cut(s)	744
EcoRII	CCWGG	4 cut(s)	228, 676, 765, 816
EcoRV	GATATC	2 cut(s)	592, 841
EcoT14I	CCWWGG	2 cut(s)	303, 560
ErhI	CCWWGG	2 cut(s)	303, 560
FaeI	CATG	3 cut(s)	439, 479, 656
FatI	CATG	3 cut(s)	435, 475, 652
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	2 cut(s)	753, 822
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	2 cut(s)	753, 822
FspBI	CTAG	3 cut(s)	240, 522, 847
GluI	GCNGC	2 cut(s)	753, 822
GsaI	CCCAGC	1 cut(s)	547
GsuI	CTGGAG	2 cut(s)	156, 251
HaeIII	GGCC	4 cut(s)	95, 676, 704, 765
HapII	CCGG	1 cut(s)	602
Hin1II	CATG	3 cut(s)	439, 479, 656
HinfI	GANTC	3 cut(s)	131, 377, 722
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	2 cut(s)	9, 173
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	5 cut(s)	58, 103, 184, 199, 814
Hpy188III	TCNNGA	3 cut(s)	135, 173, 602
Hpy8I	GTNNAC	1 cut(s)	164
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	1 cut(s)	407
HpyCH4III	ACNGT	3 cut(s)	226, 281, 629
HpyCH4IV	ACGT	2 cut(s)	88, 646
HpyCH4V	TGCA	5 cut(s)	45, 419, 485, 670, 824
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	2 cut(s)	88, 646
Hsp92II	CATG	3 cut(s)	439, 479, 656
Kpn2I	TCCGGA	1 cut(s)	601
KpnI	GGTACC	1 cut(s)	684
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	3 cut(s)	103, 316, 790
LmnI	GCTCC	3 cut(s)	570, 604, 604
Lsp1109I	GCAGC	2 cut(s)	739, 808
LweI	GCATC	3 cut(s)	428, 472, 630
MaeI	CTAG	3 cut(s)	240, 522, 847
MaeII	ACGT	2 cut(s)	88, 646
MaeIII	GTNAC	1 cut(s)	832
MalI	GATC	3 cut(s)	105, 318, 792
MboI	GATC	3 cut(s)	103, 316, 790
MboII	GAAGA	4 cut(s)	89, 323, 440, 464
MhlI	GDGCHC	1 cut(s)	144
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	2 cut(s)	324, 369
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	2 cut(s)	371, 731
MmeI	TCCRAC	1 cut(s)	291
Mox20I	TGGCCA	1 cut(s)	95
MroI	TCCGGA	1 cut(s)	601
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	3 cut(s)	363, 372, 636
MslI	CAYNNNNRTG	1 cut(s)	480
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	4 cut(s)	230, 678, 767, 818
MvaI	CCWGG	4 cut(s)	230, 678, 767, 818
NdeII	GATC	3 cut(s)	103, 316, 790
NlaIII	CATG	3 cut(s)	439, 479, 656
NlaIV	GGNNCC	2 cut(s)	566, 682
NspI	RCATGY	1 cut(s)	656
PceI	AGGCCT	2 cut(s)	676, 704
PcsI	WCGNNNNNNNCGW	1 cut(s)	735
PfeI	GAWTC	1 cut(s)	131
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	754, 823
PleI	GAGTC	2 cut(s)	371, 730
PpsI	GAGTC	2 cut(s)	371, 730
PsiI	TTATAA	1 cut(s)	191
Psp6I	CCWGG	4 cut(s)	228, 676, 765, 816
PspFI	CCCAGC	1 cut(s)	543
PspGI	CCWGG	4 cut(s)	228, 676, 765, 816
PspN4I	GGNNCC	2 cut(s)	566, 682
PsrI	GAACNNNNNNTAC	2 cut(s)	336, 368
RsaI	GTAC	3 cut(s)	247, 359, 682
RsaNI	GTAC	3 cut(s)	246, 358, 681
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	3 cut(s)	363, 372, 636
SatI	GCNGC	2 cut(s)	753, 822
Sau3AI	GATC	3 cut(s)	103, 316, 790
SchI	GAGTC	2 cut(s)	371, 731
ScrFI	CCNGG	4 cut(s)	230, 678, 767, 818
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	3 cut(s)	428, 472, 630
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	324, 369
SseBI	AGGCCT	2 cut(s)	676, 704
SsiI	CCGC	2 cut(s)	425, 844
SspMI	CTAG	3 cut(s)	240, 522, 847
StuI	AGGCCT	2 cut(s)	676, 704
StyD4I	CCNGG	4 cut(s)	228, 676, 765, 816
StyI	CCWWGG	2 cut(s)	303, 560
TaaI	ACNGT	3 cut(s)	226, 281, 629
TaiI	ACGT	2 cut(s)	91, 649
TaqI	TCGA	3 cut(s)	298, 588, 729
TasI	AATT	2 cut(s)	324, 369
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	3 cut(s)	363, 372, 636
Tru9I	TTAA	3 cut(s)	363, 372, 636
TscAI	CASTG	3 cut(s)	404, 523, 556
TseI	GCWGC	2 cut(s)	752, 821
TspDTI	ATGAA	3 cut(s)	17, 381, 464
TspGWI	ACGGA	2 cut(s)	206, 727
TspRI	CASTG	3 cut(s)	404, 523, 556
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XspI	CTAG	3 cut(s)	240, 522, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.