Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001995

Physical Location & Seq

Genomic Coordinates Reverse (-)

23191436 .. 23192588

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGTGAAATTCACAGCTGAGGAGCTCCGTAGGATTATGGACTACAAACACAACATTCGTAATATGTCTGTTATTGCGCACGTCGACCATGGGAAGTCAACTCTTACCGACTCCCTTGTCGCTGCTGCTGGCATCATTGCACAGGAAGTTGCCGGTGATGTCCGTATGACGGATACCCGTGCAGATGAAGCTGAGCGTGGTATCACAATCAAATCTACCGGTATCTCTTTGTACTATGAGATGACTGATGAGTCTTTGCAGAGGTTCAAGGGAGAGAGAAATGGAAATGAGTACCTCATCAATCTCATTGATTCCCCCGGGCACGTTGACTTTTCATCTGAGGTCACAGCTGCTCTGCGTATTACTGATGGTGCACTTGTGGTGGTGGATTGTATTGAGGGTGTGTGTGTCCAGACTGAGACTGTGCTCCGTCAAGCCTTGGGAGAGAGGATCGGTCCTGTTTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAGCTCCAGGTCGATGGAGAAGAGGCTTACCAGACATTCCAAAGAGTTATTGAAAATGCCAATGTCATTATGGCTACATATGAAGATCCACTTCTTGGTGATGTCCAGGTGTACCCAGAGAAAGGAACCGTTGCCTTTTCAGCTGGTTTGCACGGTTGGGCTTTCACTCTGACCAACTTCGCTAAGATGTATGCTTCCAAGTTTGGAGTTGATGAGTCAAAGATGATGGAAAGGCTCTGGGGTGAGAACTTCTTTGACCCAGCTACCAAGAAATGGACCAGCAAGAACACTGGAACAGCTACTTGCAAGCGTGGTTTTGTTCAGTTCTGTTATGAGCCCATCAAGCAGATCGATCAACACCTGCATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04152 ko04921 map04152 map04921

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

289

Amino Acids

32.29

Weight (kDa)

5.13

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56070 AT1G56070 AT1G56070 AT3G12915
fragaria_vesca	FvH4_3g15630 FvH4_3g15640
malus_domestica	MD05G1220800.v1.1 MD05G1221000.v1.1 MD10G1203200.v1.1 MD10G1203300.v1.1
prunus_persica	Prupe.4G138700_v2.0.a1 Prupe.4G138700_v2.0.a1 Prupe.4G138700_v2.0.a1 Prupe.4G138700_v2.0.a1 Prupe.4G138900_v2.0.a1 Prupe.4G138900_v2.0.a1 Prupe.4G138900_v2.0.a1 Prupe.4G141700_v2.0.a1
pyrus_communis	pycom05g20420 pycom05g20430 pycom10g17380 pycom10g17390
rosa_chinensis	RchiOBHm_Chr5g0026251 RchiOBHm_Chr5g0026301 RchiOBHm_Chr6g0257391
rosa_laevigata	RLG00000032918 RLG00000032921
rosa_multiflora	Rmu_sc0000632.1_g000007 Rmu_sc0009978.1_g000014
rosa_roxburghii	Rroxscaffold_1G00053060 Rroxscaffold_3G00244570
rosa_rugosa	Rorug05G0091900 Rorug05G0092100 Rorug07G0150400
rosa_samantha	Rh5AG184900 Rh5BG181800 Rh5BG182000 Rh5CG201000 Rh5CG201300 Rh5DG183500 Rh5DG183800 Rh7BG278900 Rh7BG279100
rosa_wichuraiana	Rw5G016770 Rw5G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	116, 250
Acc16I	TGCGCA	1 cut(s)	78
AccB7I	CCANNNNNTGG	2 cut(s)	590, 768
AccI	GTMKAC	1 cut(s)	84
AclWI	GGATC	2 cut(s)	458, 575
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	3 cut(s)	233, 293, 608
AfiI	CCNNNNNNNGG	4 cut(s)	169, 590, 617, 768
AgeI	ACCGGT	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	268, 548
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	2 cut(s)	501, 600
AluBI	AGCT	8 cut(s)	17, 25, 191, 350, 499, 638, 758, 794
AluI	AGCT	8 cut(s)	17, 25, 191, 350, 499, 638, 758, 794
Alw21I	GWGCWC	4 cut(s)	27, 376, 429, 501
Alw26I	GTCTC	1 cut(s)	413
Alw44I	GTGCAC	1 cut(s)	372
AlwI	GGATC	2 cut(s)	458, 575
Ama87I	CYCGRG	1 cut(s)	317
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	3 cut(s)	122, 125, 350
ApoI	RAATTY	1 cut(s)	8
AsiGI	ACCGGT	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	2 cut(s)	455, 771
AsuC2I	CCSGG	2 cut(s)	318, 319
AsuHPI	GGTGA	4 cut(s)	16, 167, 605, 749
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	455, 771
BaeGI	GKGCMC	2 cut(s)	324, 376
BanII	GRGCYC	3 cut(s)	27, 501, 834
Bbv12I	GWGCWC	4 cut(s)	27, 376, 429, 501
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	109, 112, 337
BccI	CCATC	5 cut(s)	362, 472, 503, 715, 842
BciT130I	CCWGG	2 cut(s)	503, 602
BciVI	GTATCC	1 cut(s)	166
BcnI	CCSGG	2 cut(s)	318, 319
BcoDI	GTCTC	1 cut(s)	413
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	3 cut(s)	123, 126, 351
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	3 cut(s)	124, 127, 352
Bme1390I	CCNGG	4 cut(s)	318, 319, 503, 602
Bme18I	GGWCC	2 cut(s)	455, 771
BmeT110I	CYCGRG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	455, 771
BmiI	GGNNCC	1 cut(s)	622
BmrFI	CCNGG	4 cut(s)	318, 319, 503, 602
BmsI	GCATC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	18
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	2 cut(s)	318, 319
Bsa29I	ATCGAT	1 cut(s)	846
BsaJI	CCNNGG	4 cut(s)	88, 316, 317, 438
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 590, 617, 768
Bse118I	RCCGGY	2 cut(s)	152, 218
Bse1I	ACTGG	1 cut(s)	790
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	503, 602
BseCI	ATCGAT	1 cut(s)	846
BseDI	CCNNGG	4 cut(s)	88, 316, 317, 438
BseLI	CCNNNNNNNGG	4 cut(s)	169, 590, 617, 768
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	4 cut(s)	9, 183, 330, 408
BseNI	ACTGG	1 cut(s)	790
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	2 cut(s)	324, 376
BseXI	GCAGC	3 cut(s)	109, 112, 337
BseYI	CCCAGC	1 cut(s)	754
BsgI	GTGCAG	1 cut(s)	201
BshTI	ACCGGT	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	846
BsiHKAI	GWGCWC	4 cut(s)	27, 376, 429, 501
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	3 cut(s)	153, 219, 318
BslI	CCNNNNNNNGG	4 cut(s)	169, 590, 617, 768
BsmAI	GTCTC	1 cut(s)	413
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	6 cut(s)	27, 324, 376, 429, 501, 834
Bsp143I	GATC	4 cut(s)	450, 580, 843, 847
Bsp1720I	GCTNAGC	1 cut(s)	192
Bsp19I	CCATGG	1 cut(s)	88
BspCNI	CTCAG	4 cut(s)	10, 184, 331, 409
BspDI	ATCGAT	1 cut(s)	846
BspLI	GGNNCC	1 cut(s)	622
BspPI	GGATC	2 cut(s)	458, 575
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	2 cut(s)	152, 218
BsrI	ACTGG	1 cut(s)	790
BssAI	RCCGGY	2 cut(s)	152, 218
BssECI	CCNNGG	4 cut(s)	88, 316, 317, 438
BssMI	GATC	4 cut(s)	450, 580, 843, 847
BssT1I	CCWWGG	2 cut(s)	88, 438
Bst2UI	CCWGG	2 cut(s)	503, 602
Bst4CI	ACNGT	4 cut(s)	424, 469, 625, 650
Bst6I	CTCTTC	1 cut(s)	510
BstC8I	GCNNGC	2 cut(s)	130, 803
BstDEI	CTNAG	5 cut(s)	18, 192, 339, 417, 678
BstDSI	CCRYGG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	4 cut(s)	453, 583, 846, 850
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	4 cut(s)	450, 580, 843, 847
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 635, 838
BstNI	CCWGG	2 cut(s)	503, 602
BstSCI	CCNGG	4 cut(s)	316, 317, 501, 600
BstSLI	GKGCMC	2 cut(s)	324, 376
BstV1I	GCAGC	3 cut(s)	109, 112, 337
BstX2I	RGATCY	1 cut(s)	580
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	580
Bsu15I	ATCGAT	1 cut(s)	846
BsuI	GTATCC	1 cut(s)	166
BsuTUI	ATCGAT	1 cut(s)	846
BtgI	CCRYGG	1 cut(s)	88
BtrI	CACGTC	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	783
Cac8I	GCNNGC	2 cut(s)	130, 803
CfoI	GCGC	1 cut(s)	79
Cfr10I	RCCGGY	2 cut(s)	152, 218
Cfr13I	GGNCC	2 cut(s)	455, 771
Cfr9I	CCCGGG	1 cut(s)	317
ClaI	ATCGAT	1 cut(s)	846
Csp6I	GTAC	3 cut(s)	232, 292, 607
CspAI	ACCGGT	1 cut(s)	218
CviAII	CATG	2 cut(s)	89, 860
CviQI	GTAC	3 cut(s)	232, 292, 607
DdeI	CTNAG	5 cut(s)	18, 192, 339, 417, 678
DpnI	GATC	4 cut(s)	452, 582, 845, 849
DpnII	GATC	4 cut(s)	450, 580, 843, 847
DrdI	GACNNNNNNGTC	2 cut(s)	116, 250
DseDI	GACNNNNNNGTC	2 cut(s)	116, 250
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Ecl136II	GAGCTC	2 cut(s)	25, 499
Eco130I	CCWWGG	2 cut(s)	88, 438
Eco24I	GRGCYC	3 cut(s)	27, 501, 834
Eco47I	GGWCC	2 cut(s)	455, 771
Eco53kI	GAGCTC	2 cut(s)	25, 499
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	2 cut(s)	25, 499
EcoRII	CCWGG	2 cut(s)	501, 600
EcoT14I	CCWWGG	2 cut(s)	88, 438
EcoT38I	GRGCYC	3 cut(s)	27, 501, 834
ErhI	CCWWGG	2 cut(s)	88, 438
FaeI	CATG	2 cut(s)	92, 863
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FatI	CATG	2 cut(s)	88, 859
FauNDI	CATATG	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	123, 126, 351
FriOI	GRGCYC	3 cut(s)	27, 501, 834
Fsp4HI	GCNGC	3 cut(s)	123, 126, 351
FspI	TGCGCA	1 cut(s)	78
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	3 cut(s)	123, 126, 351
GsaI	CCCAGC	1 cut(s)	758
GsuI	CTGGAG	1 cut(s)	485
HapII	CCGG	3 cut(s)	153, 219, 318
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	2 cut(s)	92, 863
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	4 cut(s)	85, 99, 328, 472
HindII	GTYRAC	4 cut(s)	85, 99, 328, 472
HinfI	GANTC	4 cut(s)	110, 251, 311, 710
HpaI	GTTAAC	1 cut(s)	472
HpaII	CCGG	3 cut(s)	153, 219, 318
HphI	GGTGA	4 cut(s)	16, 167, 605, 749
Hpy166II	GTNNAC	6 cut(s)	85, 99, 328, 374, 472, 607
Hpy188I	TCNGA	2 cut(s)	340, 666
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	6 cut(s)	85, 99, 328, 374, 472, 607
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	4 cut(s)	424, 469, 625, 650
HpyCH4IV	ACGT	2 cut(s)	81, 324
HpyCH4V	TGCA	7 cut(s)	140, 182, 259, 374, 646, 801, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 635, 838
HpyF3I	CTNAG	5 cut(s)	18, 192, 339, 417, 678
HpySE526I	ACGT	2 cut(s)	81, 324
Hsp92II	CATG	2 cut(s)	92, 863
HspAI	GCGC	1 cut(s)	77
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	4 cut(s)	450, 580, 843, 847
LmnI	GCTCC	4 cut(s)	22, 30, 432, 504
Lsp1109I	GCAGC	3 cut(s)	109, 112, 337
LweI	GCATC	1 cut(s)	141
MaeII	ACGT	2 cut(s)	81, 324
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	4 cut(s)	452, 582, 845, 849
MboI	GATC	4 cut(s)	450, 580, 843, 847
MboII	GAAGA	2 cut(s)	527, 590
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	6 cut(s)	27, 324, 376, 429, 501, 834
MluCI	AATT	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	104, 260, 719
MnlI	CCTC	7 cut(s)	13, 255, 305, 334, 391, 441, 511
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	858
MspA1I	CMGCKG	3 cut(s)	17, 350, 638
MspI	CCGG	3 cut(s)	153, 219, 318
MspR9I	CCNGG	4 cut(s)	318, 319, 503, 602
MvaI	CCWGG	2 cut(s)	503, 602
MwoI	GCNNNNNNNGC	3 cut(s)	188, 635, 838
NciI	CCSGG	2 cut(s)	318, 319
NcoI	CCATGG	1 cut(s)	88
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	4 cut(s)	450, 580, 843, 847
NlaIII	CATG	2 cut(s)	92, 863
NlaIV	GGNNCC	1 cut(s)	622
NmuCI	GTSAC	1 cut(s)	343
NsbI	TGCGCA	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	311
PflMI	CCANNNNNTGG	2 cut(s)	590, 768
PinAI	ACCGGT	1 cut(s)	218
PkrI	GCNGC	3 cut(s)	124, 127, 352
PleI	GAGTC	3 cut(s)	104, 259, 718
PpsI	GAGTC	3 cut(s)	104, 259, 718
Psp124BI	GAGCTC	2 cut(s)	27, 501
Psp6I	CCWGG	2 cut(s)	501, 600
PspFI	CCCAGC	1 cut(s)	754
PspGI	CCWGG	2 cut(s)	501, 600
PspN4I	GGNNCC	1 cut(s)	622
PspPI	GGNCC	2 cut(s)	455, 771
PsuI	RGATCY	1 cut(s)	580
PvuII	CAGCTG	3 cut(s)	17, 350, 638
RsaI	GTAC	3 cut(s)	233, 293, 608
RsaNI	GTAC	3 cut(s)	232, 292, 607
RseI	CAYNNNNRTG	1 cut(s)	858
SacI	GAGCTC	2 cut(s)	27, 501
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	3 cut(s)	123, 126, 351
Sau3AI	GATC	4 cut(s)	450, 580, 843, 847
Sau96I	GGNCC	2 cut(s)	455, 771
SchI	GAGTC	3 cut(s)	104, 260, 719
ScrFI	CCNGG	4 cut(s)	318, 319, 503, 602
SduI	GDGCHC	6 cut(s)	27, 324, 376, 429, 501, 834
SfaNI	GCATC	1 cut(s)	141
SinI	GGWCC	2 cut(s)	455, 771
SmaI	CCCGGG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	1 cut(s)	8
SstI	GAGCTC	2 cut(s)	27, 501
StyD4I	CCNGG	4 cut(s)	316, 317, 501, 600
StyI	CCWWGG	2 cut(s)	88, 438
TaaI	ACNGT	4 cut(s)	424, 469, 625, 650
TaiI	ACGT	2 cut(s)	84, 327
TaqI	TCGA	3 cut(s)	84, 507, 846
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	1 cut(s)	8
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	3 cut(s)	122, 125, 350
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	201, 324, 591
TspGWI	ACGGA	4 cut(s)	17, 152, 185, 419
TspMI	CCCGGG	1 cut(s)	317
TspRI	CASTG	1 cut(s)	790
Van91I	CCANNNNNTGG	2 cut(s)	590, 768
VneI	GTGCAC	1 cut(s)	372
VpaK11BI	GGWCC	2 cut(s)	455, 771
XapI	RAATTY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmaI	CCCGGG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.