Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001995

Physical Location & Seq

Genomic Coordinates Forward (+)

12699824 .. 12700913

Gene Structure 1090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAAGTTCTCTGTCTCACCTGTTGTGCGTGTTGCTGTTCAGTGCAAGGTTGCTTCAGATCTTCCCAAGCTTGTTGAAGGTCTCAAACGTCTGGCAAAGTCTGATCCTATGGTTGTCTGTTCTATTGAGGAGTCTGGAGAGCACATTATTGCCGGTGCTGGTGAACTCCACCTTGAGATCTGTTTGAAGGATCTTCAGGATGATTTTATGGGTGGAGCTGAAATTGTAAAATCTGACCCTGTTGTGTCCTTCCGTGAGACTGTCCTTGAGAAGTCTGTCCGTACAGTGATGAGCAAATCCCCCAACAAGCATAACCGTCTGTACATGGAAGCACGCCCATTGGAAGAAGGTCTTGCAGAGGCCATTGATGATGGCCGTATTGGTCCAAGGGATGATCCTAAAATTCGTTCCAAGATCTTGGCTGAGGAATTTGGTTGGGACAAGGATCTTGCTAAGAAAATCTGGTGTTTTGGCCCTGAGACAACTGGTCCTAATATGGTGGTTGACATGTGTGCATTGGCTGAAGAAAACATGAGGGGTATTTGCTTTGAAGTCTGTGATGTTGTTCTTCATGCTGATGCTATTCACAGAGGAGGTGGTCAGGTCATTCCAACCGCCAGGAGGGTTATCTATGCTTCTCAGCTTACAGCCAAGCCAAGGCTCCTTGAACCCGTATATCTTGTTGAAATTCAAGCCCCTGAGGGTGCTCTTGGAGGTATCTACAGTGTTCTCAATCAGAAGCGTGGACATGTTTTCGAAGAAATTCAGAGGCCTGGTACCCCACTGTACAACATCAACGCATACCTGCCTGTTGTTGAATCTTTCGGGTTCTCTGGTCAGTTGAGGGCTTCCACTTCAGGACAGGCTTTCCCCCAGTGTGTGTTTGATCATTGGGAGATGATGTCTTCTGATCCGTTGGAGGCTGGTTCCCAGGCATCTCAGCTGGTTCAAGACATCCGTAAGAGGAAGGGTTTGAAGGAGCAAATGACCCCGCTTTCTGACTTTGAGGACAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04152 ko04921 map04152 map04921

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

339

Amino Acids

37.48

Weight (kDa)

5.43

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFG_III	PF14492	7 - 69	2.5e-12	Elongation Factor G, domain III
EFG_IV	PF03764	173 - 218	4.8e-06	Elongation factor G, domain IV
EFG_C	PF00679	220 - 307	2.6e-20	Elongation factor G C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56070 AT1G56070 AT1G56070 AT3G12915
fragaria_vesca	FvH4_3g15630 FvH4_3g15640
malus_domestica	MD05G1220800.v1.1 MD05G1221000.v1.1 MD10G1203200.v1.1 MD10G1203300.v1.1
prunus_persica	Prupe.4G138700_v2.0.a1 Prupe.4G138700_v2.0.a1 Prupe.4G138700_v2.0.a1 Prupe.4G138700_v2.0.a1 Prupe.4G138900_v2.0.a1 Prupe.4G138900_v2.0.a1 Prupe.4G138900_v2.0.a1 Prupe.4G141700_v2.0.a1
pyrus_communis	pycom05g20420 pycom05g20430 pycom10g17380 pycom10g17390
rosa_chinensis	RchiOBHm_Chr5g0026251 RchiOBHm_Chr5g0026301 RchiOBHm_Chr6g0257391
rosa_laevigata	RLG00000032918 RLG00000032921
rosa_multiflora	Rmu_sc0000632.1_g000007 Rmu_sc0009978.1_g000014
rosa_roxburghii	Rroxscaffold_1G00053060 Rroxscaffold_3G00244570
rosa_rugosa	Rorug05G0091900 Rorug05G0092100 Rorug07G0150400
rosa_samantha	Rh5AG184900 Rh5BG181800 Rh5BG182000 Rh5CG201000 Rh5CG201300 Rh5DG183500 Rh5DG183800 Rh7BG278900 Rh7BG279100
rosa_wichuraiana	Rw5G016770 Rw5G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	813
Acc65I	GGTACC	1 cut(s)	776
AccB1I	GGYRCC	1 cut(s)	776
AciI	CCGC	2 cut(s)	615, 992
AclWI	GGATC	5 cut(s)	98, 198, 389, 453, 905
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	4 cut(s)	402, 428, 687, 762
AcuI	CTGAAG	4 cut(s)	39, 179, 543, 840
AfaI	GTAC	4 cut(s)	283, 323, 778, 788
AfiI	CCNNNNNNNGG	2 cut(s)	621, 657
AflIII	ACRYGT	2 cut(s)	507, 748
AgsI	TTSAA	9 cut(s)	77, 187, 551, 668, 686, 692, 818, 950, 976
AhdI	GACNNNNNGTC	1 cut(s)	486
AjnI	CCWGG	3 cut(s)	617, 772, 930
AluBI	AGCT	5 cut(s)	70, 218, 643, 943, 1015
AluI	AGCT	5 cut(s)	70, 218, 643, 943, 1015
Alw21I	GWGCWC	2 cut(s)	144, 709
Alw26I	GTCTC	4 cut(s)	19, 86, 251, 473
AlwI	GGATC	5 cut(s)	98, 198, 389, 453, 905
AoxI	GGCC	4 cut(s)	360, 373, 472, 770
ApoI	RAATTY	4 cut(s)	402, 428, 687, 762
Asp700I	GAANNNNTTC	1 cut(s)	762
Asp718I	GGTACC	1 cut(s)	776
AspS9I	GGNCC	3 cut(s)	383, 473, 488
AsuHPI	GGTGA	2 cut(s)	9, 173
AsuII	TTCGAA	1 cut(s)	756
AvaII	GGWCC	2 cut(s)	383, 488
AxyI	CCTNAGG	1 cut(s)	699
BanI	GGYRCC	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	897
Bbv12I	GWGCWC	2 cut(s)	144, 709
BbvCI	CCTCAGC	1 cut(s)	423
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	360
BciT130I	CCWGG	3 cut(s)	619, 774, 932
BclI	TGATCA	1 cut(s)	886
BcoDI	GTCTC	4 cut(s)	19, 86, 251, 473
BfmI	CTRYAG	1 cut(s)	721
BfuAI	ACCTGC	1 cut(s)	813
BglII	AGATCT	3 cut(s)	58, 177, 414
Bme1390I	CCNGG	3 cut(s)	619, 774, 932
Bme18I	GGWCC	2 cut(s)	383, 488
BmeRI	GACNNNNNGTC	1 cut(s)	486
BmgT120I	GGNCC	3 cut(s)	383, 473, 488
BmiI	GGNNCC	3 cut(s)	662, 778, 928
BmrFI	CCNGG	3 cut(s)	619, 774, 932
BmrI	ACTGGG	1 cut(s)	868
BmsI	GCATC	2 cut(s)	568, 944
BmuI	ACTGGG	1 cut(s)	868
BpiI	GAAGAC	1 cut(s)	897
BpmI	CTGGAG	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	756
BpuEI	CTTGAG	2 cut(s)	194, 287
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	386, 656, 930
BsaXI	ACNNNNNCTCC	2 cut(s)	887, 917
Bsc4I	CCNNNNNNNGG	2 cut(s)	621, 657
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	490, 874
Bse21I	CCTNAGG	1 cut(s)	699
BseBI	CCWGG	3 cut(s)	619, 774, 932
BseDI	CCNNGG	3 cut(s)	386, 656, 930
BseGI	GGATG	3 cut(s)	205, 397, 954
BseLI	CCNNNNNNNGG	2 cut(s)	621, 657
BseMII	CTCAG	5 cut(s)	414, 468, 653, 690, 953
BseNI	ACTGG	2 cut(s)	490, 874
BseRI	GAGGAG	2 cut(s)	143, 606
BshFI	GGCC	4 cut(s)	362, 375, 474, 772
BshNI	GGYRCC	1 cut(s)	776
BsiHKAI	GWGCWC	2 cut(s)	144, 709
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	621, 657
BsmAI	GTCTC	4 cut(s)	19, 86, 251, 473
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	4 cut(s)	362, 375, 474, 772
Bso31I	GGTCTC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	756
Bsp1286I	GDGCHC	2 cut(s)	144, 709
Bsp1407I	TGTACA	2 cut(s)	321, 786
Bsp143I	GATC	9 cut(s)	58, 103, 177, 190, 394, 414, 445, 886, 910
BspACI	CCGC	2 cut(s)	615, 992
BspANI	GGCC	4 cut(s)	362, 375, 474, 772
BspCNI	CTCAG	5 cut(s)	415, 469, 652, 691, 952
BspLI	GGNNCC	3 cut(s)	662, 778, 928
BspMI	ACCTGC	1 cut(s)	813
BspPI	GGATC	5 cut(s)	98, 198, 389, 453, 905
BspT104I	TTCGAA	1 cut(s)	756
BspT107I	GGYRCC	1 cut(s)	776
BspTNI	GGTCTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	152
BsrGI	TGTACA	2 cut(s)	321, 786
BsrI	ACTGG	2 cut(s)	490, 874
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	386, 656, 930
BssMI	GATC	9 cut(s)	58, 103, 177, 190, 394, 414, 445, 886, 910
BssT1I	CCWWGG	2 cut(s)	386, 656
Bst2UI	CCWGG	3 cut(s)	619, 774, 932
Bst4CI	ACNGT	5 cut(s)	262, 286, 317, 725, 786
BstAUI	TGTACA	2 cut(s)	321, 786
BstBI	TTCGAA	1 cut(s)	756
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	6 cut(s)	423, 453, 477, 639, 699, 939
BstF5I	GGATG	3 cut(s)	205, 397, 954
BstKTI	GATC	9 cut(s)	61, 106, 180, 193, 397, 417, 448, 889, 913
BstMAI	GTCTC	4 cut(s)	19, 86, 251, 473
BstMBI	GATC	9 cut(s)	58, 103, 177, 190, 394, 414, 445, 886, 910
BstNI	CCWGG	3 cut(s)	619, 774, 932
BstNSI	RCATGY	2 cut(s)	511, 752
BstSCI	CCNGG	3 cut(s)	617, 772, 930
BstSFI	CTRYAG	1 cut(s)	721
BstV2I	GAAGAC	1 cut(s)	897
BstX2I	RGATCY	5 cut(s)	58, 177, 190, 414, 445
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstYI	RGATCY	5 cut(s)	58, 177, 190, 414, 445
Bsu36I	CCTNAGG	1 cut(s)	699
BsuRI	GGCC	4 cut(s)	362, 375, 474, 772
BtsCI	GGATG	3 cut(s)	205, 397, 954
BtsIMutI	CAGTG	5 cut(s)	47, 291, 730, 782, 881
BveI	ACCTGC	1 cut(s)	813
Cac8I	GCNNGC	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	3 cut(s)	383, 473, 488
Csp6I	GTAC	4 cut(s)	282, 322, 777, 787
CviAII	CATG	5 cut(s)	325, 508, 532, 572, 749
CviQI	GTAC	4 cut(s)	282, 322, 777, 787
DdeI	CTNAG	6 cut(s)	423, 453, 477, 639, 699, 939
DpnI	GATC	9 cut(s)	60, 105, 179, 192, 396, 416, 447, 888, 912
DpnII	GATC	9 cut(s)	58, 103, 177, 190, 394, 414, 445, 886, 910
DriI	GACNNNNNGTC	1 cut(s)	486
EaeI	YGGCCR	1 cut(s)	373
Eam1105I	GACNNNNNGTC	1 cut(s)	486
Eco130I	CCWWGG	2 cut(s)	386, 656
Eco147I	AGGCCT	1 cut(s)	772
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	2 cut(s)	383, 488
Eco57I	CTGAAG	4 cut(s)	39, 179, 543, 840
Eco81I	CCTNAGG	1 cut(s)	699
EcoRII	CCWGG	3 cut(s)	617, 772, 930
EcoT14I	CCWWGG	2 cut(s)	386, 656
ErhI	CCWWGG	2 cut(s)	386, 656
FaeI	CATG	5 cut(s)	328, 511, 535, 575, 752
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	5 cut(s)	324, 507, 531, 571, 748
FauI	CCCGC	1 cut(s)	999
FbaI	TGATCA	1 cut(s)	886
FokI	GGATG	3 cut(s)	212, 404, 941
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	4 cut(s)	362, 375, 474, 772
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	5 cut(s)	328, 511, 535, 575, 752
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	131, 818
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	9, 173
Hpy166II	GTNNAC	3 cut(s)	164, 505, 746
Hpy188I	TCNGA	7 cut(s)	58, 103, 235, 738, 768, 910, 1000
Hpy188III	TCNNGA	4 cut(s)	135, 197, 858, 950
Hpy8I	GTNNAC	3 cut(s)	164, 505, 746
HpyAV	CCTTC	6 cut(s)	71, 181, 259, 341, 961, 970
HpyCH4III	ACNGT	5 cut(s)	262, 286, 317, 725, 786
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	3 cut(s)	45, 356, 515
HpyF3I	CTNAG	6 cut(s)	423, 453, 477, 639, 699, 939
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	5 cut(s)	328, 511, 535, 575, 752
KpnI	GGTACC	1 cut(s)	780
Ksp22I	TGATCA	1 cut(s)	886
Kzo9I	GATC	9 cut(s)	58, 103, 177, 190, 394, 414, 445, 886, 910
LmnI	GCTCC	3 cut(s)	215, 666, 979
LweI	GCATC	2 cut(s)	568, 944
MaeII	ACGT	1 cut(s)	88
MalI	GATC	9 cut(s)	60, 105, 179, 192, 396, 416, 447, 888, 912
MboI	GATC	9 cut(s)	58, 103, 177, 190, 394, 414, 445, 886, 910
MboII	GAAGA	7 cut(s)	53, 185, 356, 536, 560, 770, 897
MflI	RGATCY	5 cut(s)	58, 177, 190, 414, 445
MhlI	GDGCHC	2 cut(s)	144, 709
MluCI	AATT	5 cut(s)	222, 402, 428, 687, 762
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	635, 897
MroXI	GAANNNNTTC	1 cut(s)	762
MslI	CAYNNNNRTG	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	943
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	3 cut(s)	619, 774, 932
MvaI	CCWGG	3 cut(s)	619, 774, 932
NdeII	GATC	9 cut(s)	58, 103, 177, 190, 394, 414, 445, 886, 910
NlaIII	CATG	5 cut(s)	328, 511, 535, 575, 752
NlaIV	GGNNCC	3 cut(s)	662, 778, 928
NspI	RCATGY	2 cut(s)	511, 752
NspV	TTCGAA	1 cut(s)	756
PceI	AGGCCT	1 cut(s)	772
PciI	ACATGT	2 cut(s)	507, 748
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	1 cut(s)	818
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PscI	ACATGT	2 cut(s)	507, 748
Psp6I	CCWGG	3 cut(s)	617, 772, 930
PspGI	CCWGG	3 cut(s)	617, 772, 930
PspN4I	GGNNCC	3 cut(s)	662, 778, 928
PspPI	GGNCC	3 cut(s)	383, 473, 488
PsuI	RGATCY	5 cut(s)	58, 177, 190, 414, 445
PvuII	CAGCTG	1 cut(s)	943
RsaI	GTAC	4 cut(s)	283, 323, 778, 788
RsaNI	GTAC	4 cut(s)	282, 322, 777, 787
RseI	CAYNNNNRTG	1 cut(s)	576
Sau3AI	GATC	9 cut(s)	58, 103, 177, 190, 394, 414, 445, 886, 910
Sau96I	GGNCC	3 cut(s)	383, 473, 488
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	3 cut(s)	619, 774, 932
SduI	GDGCHC	2 cut(s)	144, 709
SfaNI	GCATC	2 cut(s)	568, 944
SfcI	CTRYAG	1 cut(s)	721
SfuI	TTCGAA	1 cut(s)	756
SinI	GGWCC	2 cut(s)	383, 488
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	2 cut(s)	173, 266
SmoI	CTYRAG	2 cut(s)	173, 266
Sse9I	AATT	5 cut(s)	222, 402, 428, 687, 762
SseBI	AGGCCT	1 cut(s)	772
SsiI	CCGC	2 cut(s)	615, 992
StuI	AGGCCT	1 cut(s)	772
StyD4I	CCNGG	3 cut(s)	617, 772, 930
StyI	CCWWGG	2 cut(s)	386, 656
TaaI	ACNGT	5 cut(s)	262, 286, 317, 725, 786
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	756
TasI	AATT	5 cut(s)	222, 402, 428, 687, 762
TatI	WGTACW	2 cut(s)	321, 786
TfiI	GAWTC	1 cut(s)	818
TscAI	CASTG	5 cut(s)	47, 291, 730, 789, 881
TspDTI	ATGAA	2 cut(s)	17, 560
TspGWI	ACGGA	4 cut(s)	242, 269, 903, 947
TspRI	CASTG	5 cut(s)	47, 291, 730, 789, 881
VpaK11BI	GGWCC	2 cut(s)	383, 488
XapI	RAATTY	4 cut(s)	402, 428, 687, 762
XceI	RCATGY	2 cut(s)	511, 752
XmnI	GAANNNNTTC	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.