Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001995

Physical Location & Seq

Genomic Coordinates Reverse (-)

25921049 .. 25922024

Gene Structure 976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG278900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATGGTCGTATTGGTCCAAGGGATGATCCCAAAATTCGTTCTAAAATCTTGGCTGAGGAATTTGGTTGGGACAAGGATCTTGCTAAGAAAATCTGGTGTTTTGGCCCTGAGACTATTGGTCCTAACATGGTTGTTGACATGTGCATGTAAGGGAGTCCAGTACCTCAATGAAATCAAGGACTCAGTCGTTGCTGGGTTCCAGTGGGCTTCAAAGGAAGGAGCATTGGCTGAAGAAAACATGAGGGGTATTTGCTTTGAAATCTGTGATGTGGTTCTTCATGCTGATGCTATTCATAGAGGAGGTGGTCAGGTTATTCCAACTGCTAGGAGGGTCATCTATGCTTCTCAGCTTACAGCTAAGCCAAGGCTCCTTGAACCTGTGTATCTTGTTGAAATTCAAACTCCTGAGAATGCTCTTGGCGGTATCTACAGCCTTCTTAATCAGAAGCGTGGACATGTGTTTGAAGAAATGCAAAGGCCTGGTACTCCTCTGTACAACATCAAGGCATACCTGCCTGTCATTGAATCTTTTGGGTTCTCTGGTCAGTTGAGGGCTGCCACTTCAGGACAGGCTTTCCCGCAGTGCGTGTTTGATCATTGGGACATGATGTCTTCTGATCCATTGGAAGCTGGTTCGCAGGCTGCACAGCTTGTTACAGACATCCGTAGGATGAAGGGTTTGAAGGAGCAGATGACTCCACTTTCTGAGTTCGAGGACAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04152 ko04921 map04152 map04921

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

242

Amino Acids

26.98

Weight (kDa)

8.58

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EFG_IV	PF03764	49 - 121	1.2e-18	Elongation factor G, domain IV
EFG_C	PF00679	123 - 210	4.8e-22	Elongation factor G C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56070 AT1G56070 AT1G56070 AT3G12915
fragaria_vesca	FvH4_3g15630 FvH4_3g15640
malus_domestica	MD05G1220800.v1.1 MD05G1221000.v1.1 MD10G1203200.v1.1 MD10G1203300.v1.1
prunus_persica	Prupe.4G138700_v2.0.a1 Prupe.4G138700_v2.0.a1 Prupe.4G138700_v2.0.a1 Prupe.4G138700_v2.0.a1 Prupe.4G138900_v2.0.a1 Prupe.4G138900_v2.0.a1 Prupe.4G138900_v2.0.a1 Prupe.4G141700_v2.0.a1
pyrus_communis	pycom05g20420 pycom05g20430 pycom10g17380 pycom10g17390
rosa_chinensis	RchiOBHm_Chr5g0026251 RchiOBHm_Chr5g0026301 RchiOBHm_Chr6g0257391
rosa_laevigata	RLG00000032918 RLG00000032921
rosa_multiflora	Rmu_sc0000632.1_g000007 Rmu_sc0009978.1_g000014
rosa_roxburghii	Rroxscaffold_1G00053060 Rroxscaffold_3G00244570
rosa_rugosa	Rorug05G0091900 Rorug05G0092100 Rorug07G0150400
rosa_samantha	Rh5AG184900 Rh5BG181800 Rh5BG182000 Rh5CG201000 Rh5CG201300 Rh5DG183500 Rh5DG183800 Rh7BG278900 Rh7BG279100
rosa_wichuraiana	Rw5G016770 Rw5G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	522
AciI	CCGC	2 cut(s)	423, 581
AclWI	GGATC	3 cut(s)	22, 86, 614
AcsI	RAATTY	3 cut(s)	35, 61, 396
AcuI	CTGAAG	2 cut(s)	252, 549
AfaI	GTAC	3 cut(s)	164, 487, 497
AflIII	ACRYGT	2 cut(s)	140, 457
AgsI	TTSAA	8 cut(s)	213, 260, 377, 395, 401, 467, 527, 685
AhdI	GACNNNNNGTC	2 cut(s)	119, 610
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	5 cut(s)	352, 359, 632, 652, 724
AluI	AGCT	5 cut(s)	352, 359, 632, 652, 724
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	3 cut(s)	22, 86, 614
AoxI	GGCC	2 cut(s)	105, 479
ApeKI	GCWGC	2 cut(s)	557, 644
ApoI	RAATTY	3 cut(s)	35, 61, 396
AspS9I	GGNCC	3 cut(s)	16, 106, 121
AvaII	GGWCC	2 cut(s)	16, 121
BaeI	ACNNNNGTAYC	2 cut(s)	368, 401
BbsI	GAAGAC	1 cut(s)	606
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	544, 631
BciT130I	CCWGG	1 cut(s)	483
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	522
BisI	GCNGC	2 cut(s)	558, 645
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	2 cut(s)	559, 646
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	2 cut(s)	16, 121
BmeRI	GACNNNNNGTC	2 cut(s)	119, 610
BmgT120I	GGNCC	3 cut(s)	16, 106, 121
BmiI	GGNNCC	2 cut(s)	200, 371
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	606
Bpu10I	CCTNAGC	1 cut(s)	56
Bpu1102I	GCTNAGC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	19, 365
Bse1I	ACTGG	2 cut(s)	160, 202
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	19, 365
BseGI	GGATG	3 cut(s)	30, 663, 678
BseMII	CTCAG	6 cut(s)	47, 101, 198, 362, 399, 699
BseNI	ACTGG	2 cut(s)	160, 202
BseRI	GAGGAG	2 cut(s)	315, 480
BseXI	GCAGC	2 cut(s)	544, 631
BseYI	CCCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	630
BshFI	GGCC	2 cut(s)	107, 481
BslFI	GGGAC	2 cut(s)	85, 617
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	2 cut(s)	85, 617
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	107, 481
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	4 cut(s)	27, 78, 595, 619
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	2 cut(s)	423, 581
BspANI	GGCC	2 cut(s)	107, 481
BspCNI	CTCAG	6 cut(s)	48, 102, 197, 361, 400, 700
BspLI	GGNNCC	2 cut(s)	200, 371
BspMI	ACCTGC	1 cut(s)	522
BspPI	GGATC	3 cut(s)	22, 86, 614
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	2 cut(s)	160, 202
BssECI	CCNNGG	2 cut(s)	19, 365
BssMI	GATC	4 cut(s)	27, 78, 595, 619
BssT1I	CCWWGG	2 cut(s)	19, 365
Bst2UI	CCWGG	1 cut(s)	483
BstAUI	TGTACA	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	8 cut(s)	56, 86, 110, 184, 348, 360, 408, 708
BstF5I	GGATG	3 cut(s)	30, 663, 678
BstKTI	GATC	4 cut(s)	30, 81, 598, 622
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	4 cut(s)	27, 78, 595, 619
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	3 cut(s)	144, 150, 461
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	430
BstV1I	GCAGC	2 cut(s)	544, 631
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	107, 481
BtsCI	GGATG	3 cut(s)	30, 663, 678
BtsI	GCAGTG	1 cut(s)	590
BtsIMutI	CAGTG	2 cut(s)	209, 590
BveI	ACCTGC	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	642
Cfr13I	GGNCC	3 cut(s)	16, 106, 121
Csp6I	GTAC	3 cut(s)	163, 486, 496
CviAII	CATG	7 cut(s)	129, 141, 147, 241, 281, 458, 607
CviQI	GTAC	3 cut(s)	163, 486, 496
DdeI	CTNAG	8 cut(s)	56, 86, 110, 184, 348, 360, 408, 708
DpnI	GATC	4 cut(s)	29, 80, 597, 621
DpnII	GATC	4 cut(s)	27, 78, 595, 619
DriI	GACNNNNNGTC	2 cut(s)	119, 610
Eam1105I	GACNNNNNGTC	2 cut(s)	119, 610
Eco130I	CCWWGG	2 cut(s)	19, 365
Eco147I	AGGCCT	1 cut(s)	481
Eco47I	GGWCC	2 cut(s)	16, 121
Eco57I	CTGAAG	2 cut(s)	252, 549
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	19, 365
ErhI	CCWWGG	2 cut(s)	19, 365
FaeI	CATG	7 cut(s)	132, 144, 150, 244, 284, 461, 610
FaqI	GGGAC	2 cut(s)	85, 617
FatI	CATG	7 cut(s)	128, 140, 146, 240, 280, 457, 606
FauI	CCCGC	1 cut(s)	588
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	558, 645
FokI	GGATG	3 cut(s)	37, 650, 685
Fsp4HI	GCNGC	2 cut(s)	558, 645
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	2 cut(s)	558, 645
GsaI	CCCAGC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	107, 481
Hin1II	CATG	7 cut(s)	132, 144, 150, 244, 284, 461, 610
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	4 cut(s)	156, 182, 527, 697
Hpy166II	GTNNAC	2 cut(s)	138, 455
Hpy188I	TCNGA	3 cut(s)	447, 619, 709
Hpy188III	TCNNGA	2 cut(s)	407, 567
Hpy8I	GTNNAC	2 cut(s)	138, 455
HpyAV	CCTTC	4 cut(s)	212, 446, 670, 679
HpyCH4V	TGCA	3 cut(s)	146, 475, 647
HpyF3I	CTNAG	8 cut(s)	56, 86, 110, 184, 348, 360, 408, 708
Hsp92II	CATG	7 cut(s)	132, 144, 150, 244, 284, 461, 610
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	27, 78, 595, 619
LmnI	GCTCC	3 cut(s)	221, 375, 688
Lsp1109I	GCAGC	2 cut(s)	544, 631
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	4 cut(s)	29, 80, 597, 621
MboI	GATC	4 cut(s)	27, 78, 595, 619
MboII	GAAGA	4 cut(s)	245, 269, 479, 606
MflI	RGATCY	1 cut(s)	78
MluCI	AATT	3 cut(s)	35, 61, 396
MlyI	GAGTC	3 cut(s)	165, 176, 691
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	9 cut(s)	51, 176, 237, 293, 296, 324, 501, 546, 709
MseI	TTAA	2 cut(s)	441, 727
MslI	CAYNNNNRTG	2 cut(s)	145, 285
MspR9I	CCNGG	1 cut(s)	483
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	483
NdeII	GATC	4 cut(s)	27, 78, 595, 619
NlaIII	CATG	7 cut(s)	132, 144, 150, 244, 284, 461, 610
NlaIV	GGNNCC	2 cut(s)	200, 371
NspI	RCATGY	3 cut(s)	144, 150, 461
PceI	AGGCCT	1 cut(s)	481
PciI	ACATGT	2 cut(s)	140, 457
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	527
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	559, 646
PleI	GAGTC	3 cut(s)	164, 176, 691
PpsI	GAGTC	3 cut(s)	164, 176, 691
PscI	ACATGT	2 cut(s)	140, 457
Psp6I	CCWGG	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	200, 371
PspPI	GGNCC	3 cut(s)	16, 106, 121
PsuI	RGATCY	1 cut(s)	78
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	3 cut(s)	164, 487, 497
RsaNI	GTAC	3 cut(s)	163, 486, 496
RseI	CAYNNNNRTG	2 cut(s)	145, 285
SaqAI	TTAA	2 cut(s)	441, 727
SatI	GCNGC	2 cut(s)	558, 645
Sau3AI	GATC	4 cut(s)	27, 78, 595, 619
Sau96I	GGNCC	3 cut(s)	16, 106, 121
SchI	GAGTC	3 cut(s)	165, 176, 691
ScrFI	CCNGG	1 cut(s)	483
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	430
SinI	GGWCC	2 cut(s)	16, 121
SmiMI	CAYNNNNRTG	2 cut(s)	145, 285
Sse9I	AATT	3 cut(s)	35, 61, 396
SseBI	AGGCCT	1 cut(s)	481
SsiI	CCGC	2 cut(s)	423, 581
SspMI	CTAG	1 cut(s)	327
StuI	AGGCCT	1 cut(s)	481
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	2 cut(s)	19, 365
TaqI	TCGA	1 cut(s)	714
TasI	AATT	3 cut(s)	35, 61, 396
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	2 cut(s)	441, 727
Tru9I	TTAA	2 cut(s)	441, 727
TscAI	CASTG	2 cut(s)	209, 590
TseI	GCWGC	2 cut(s)	557, 644
TspDTI	ATGAA	4 cut(s)	186, 269, 284, 689
TspGWI	ACGGA	1 cut(s)	656
TspRI	CASTG	2 cut(s)	209, 590
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	16, 121
XapI	RAATTY	3 cut(s)	35, 61, 396
XceI	RCATGY	3 cut(s)	144, 150, 461
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.