Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007112

Physical Location & Seq

Genomic Coordinates Reverse (-)

13664068 .. 13667085

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G150700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGCCGGAGAAGAATAAGAAGAAGAGGTACGAATTCGAGTACTGCGTGGTTTGCAAGCTGAATCACAACCAAGGCCCGAGCCACAAGTACATACCGGGCCATACCAAGTCCCTCTCTACCTTCCTCTCTCGGTTCCAGGACAAGCTCTCCGACGTCCGCTTCTTTCTCCAAAACCCTACCCCTTTCCGCCCCGAACTCGCCTCTCGCAATCGCCTGTGGTGCGTCTTCTGCGACACCGACATTGACGAGCTAGATAGCTCCTTCGCTTGTAGTAATGCAATTAATCACCTTGCAAGTGCTGAACATCTGAAGAATTTGAAGCATTTTTTGTGGAAATATGGCGGAGGAATGGATCGACTTGATACATTTAGAATATCGGAAGATGACCTTGCTATGTGGGAGAAGAAGTGCAAATCATTGAAGAATGAAGCTGTGCCCTGCGGGGAAAAATCTCGAGGACCAACGTTTGGACCTTCAAATGATATCCATAATGAACTGAAATATGGAATTATAGATACTTTTGAAAATAATAGTAATTCAAGTTTTTCAAATGGTGTTATGCCTTTACTATTTCATACAAATGAGCATCAGGTATCCCATTCAGGACCCCCTCAAGTTACAAATGTTGGCTGCTTTCCTCAAGACGTGGCTACCTCTTCTTTACACGGGGAAACATGTTCTGGTATATATTCCATAAATTCAAAAGGTTTAACCGTTAGCAGCAGTACCCAACATTCTTTTATTTCTAATGGTAGAAAGTGCTCAGCTGATGGTTATTTCAGTAATGAAAGGATGAGCGAGGTGTATCAGCATGAAAGAATGACAAAAGGACTGAGCAGTTCTCCGGGTTTTCAGAATCTCACACAAATATCTTCCACGTGTTCTAAAGAGGCTAGTGGAAATGTGCATTCTGGGGCACCTCCTCCTTGGCTTGAAGCAGATGAAGAAATTCAGTTTACTGTTCCACCGAAACCAGCTTCAGGTACCCGTATCTCTCTGTCAAATAAGTCGAGGAAGTCCAAGAAATTGAACCCAAAACGAGTGGGAGCAGCTTGGGCAGAAAGAAGAAAGAGGGAGATGGAGATGGAGAAAAGAGGGGAGATTGTCAAGAGTGACTGTGATGCTAATTGGCTCCCTAATTTTGGTAGAGTGTGGCAATCTGGTAGCCGAAAAGAGTCCAGAAAAGAATTTGAGTTGGAGAAACAAAAATTACCTAAGGTTGAAAGTGAATTTGAGATGCCAATTAAGATACAGCCTTACGTCAGCAAACGGATGCGAACAAATGAGAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCDC84

Protein Analysis

432

Amino Acids

48.86

Weight (kDa)

8.85

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24900 AT4G24900
fragaria_vesca	FvH4_5g08360 FvH4_5g08360 FvH4_5g08360 FvH4_5g08360 FvH4_5g08360
malus_domestica	MD06G1141400.v1.1 MD14G1156600.v1.1
prunus_persica	Prupe.5G150700_v2.0.a1
pyrus_communis	pycom06g13140 pycom14g13020
rosa_chinensis	RchiOBHm_Chr7g0190081 RchiOBHm_Chr7g0190091
rosa_laevigata	RLG00000004566
rosa_multiflora	Rmu_co8003618.1_g000001 Rmu_sc0000744.1_g000156 Rmu_sc0004886.1_g000009
rosa_roxburghii	Rroxscaffold_3G00264900
rosa_rugosa	Rorug06G0502100
rosa_samantha	Rh7AG107700 Rh7BG110000 Rh7CG112400 Rh7DG110800
rosa_wichuraiana	Rw7G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	156
Acc65I	GGTACC	1 cut(s)	983
AccB1I	GGYRCC	2 cut(s)	916, 983
AccB7I	CCANNNNNTGG	1 cut(s)	467
AciI	CCGC	4 cut(s)	157, 187, 342, 441
AclI	AACGTT	1 cut(s)	464
AclWI	GGATC	1 cut(s)	360
AcsI	RAATTY	6 cut(s)	32, 313, 697, 948, 1187, 1229
AcuI	CTGAAG	2 cut(s)	329, 963
AcvI	CACGTG	1 cut(s)	879
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	5 cut(s)	29, 41, 89, 727, 985
AfiI	CCNNNNNNNGG	3 cut(s)	467, 980, 1142
AflIII	ACRYGT	2 cut(s)	674, 878
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	8 cut(s)	58, 145, 250, 258, 431, 767, 977, 1052
AluI	AGCT	8 cut(s)	58, 145, 250, 258, 431, 767, 977, 1052
Alw21I	GWGCWC	1 cut(s)	764
AlwI	GGATC	1 cut(s)	360
Ama87I	CYCGRG	2 cut(s)	76, 453
AoxI	GGCC	2 cut(s)	73, 97
ApeKI	GCWGC	3 cut(s)	630, 720, 1049
ApoI	RAATTY	6 cut(s)	32, 313, 697, 948, 1187, 1229
AseI	ATTAAT	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	948
Asp718I	GGTACC	1 cut(s)	983
AspS9I	GGNCC	5 cut(s)	74, 97, 458, 470, 605
AsuC2I	CCSGG	2 cut(s)	96, 846
AsuHPI	GGTGA	1 cut(s)	278
AvaI	CYCGRG	2 cut(s)	76, 453
AvaII	GGWCC	3 cut(s)	458, 470, 605
AxyI	CCTNAGG	1 cut(s)	1215
BaeGI	GKGCMC	2 cut(s)	438, 919
BanI	GGYRCC	2 cut(s)	916, 983
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BbrPI	CACGTG	1 cut(s)	879
BbsI	GAAGAC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	764
BbvI	GCAGC	3 cut(s)	617, 732, 1061
BccI	CCATC	3 cut(s)	764, 1072, 1078
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	604
BcnI	CCSGG	2 cut(s)	96, 846
BfaI	CTAG	2 cut(s)	251, 894
BfuI	GTATCC	1 cut(s)	604
BisI	GCNGC	3 cut(s)	631, 721, 1050
BlpI	GCTNAGC	1 cut(s)	763
BlsI	GCNGC	3 cut(s)	632, 722, 1051
BmcAI	AGTACT	1 cut(s)	41
Bme1390I	CCNGG	3 cut(s)	96, 137, 846
Bme18I	GGWCC	3 cut(s)	458, 470, 605
BmeT110I	CYCGRG	2 cut(s)	76, 453
BmgBI	CACGTC	1 cut(s)	646
BmgT120I	GGNCC	5 cut(s)	74, 97, 458, 470, 605
BmiI	GGNNCC	5 cut(s)	134, 607, 918, 985, 1133
BmrFI	CCNGG	3 cut(s)	96, 137, 846
BmsI	GCATC	4 cut(s)	595, 1111, 1227, 1263
BpiI	GAAGAC	1 cut(s)	217
BplI	GAGNNNNNCTC	2 cut(s)	826, 858
Bpu1102I	GCTNAGC	1 cut(s)	763
BpuEI	CTTGAG	2 cut(s)	597, 624
BpuMI	CCSGG	2 cut(s)	96, 846
BsaAI	YACGTR	1 cut(s)	879
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	70, 926
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 392, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	467, 980, 1142
Bse21I	CCTNAGG	1 cut(s)	1215
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	70, 926
BseGI	GGATG	2 cut(s)	798, 1278
BseLI	CCNNNNNNNGG	3 cut(s)	467, 980, 1142
BseMII	CTCAG	2 cut(s)	777, 824
BseRI	GAGGAG	1 cut(s)	912
BseSI	GKGCMC	2 cut(s)	438, 919
BseXI	GCAGC	3 cut(s)	617, 732, 1061
BshFI	GGCC	2 cut(s)	75, 99
BshNI	GGYRCC	2 cut(s)	916, 983
BsiHKAI	GWGCWC	1 cut(s)	764
BsiHKCI	CYCGRG	2 cut(s)	76, 453
BsiSI	CCGG	3 cut(s)	5, 95, 845
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	467, 980, 1142
BsmFI	GGGAC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	2 cut(s)	75, 99
BsoBI	CYCGRG	2 cut(s)	76, 453
Bsp1286I	GDGCHC	3 cut(s)	438, 764, 919
Bsp143I	GATC	1 cut(s)	352
Bsp1720I	GCTNAGC	1 cut(s)	763
BspACI	CCGC	4 cut(s)	157, 187, 342, 441
BspANI	GGCC	2 cut(s)	75, 99
BspCNI	CTCAG	2 cut(s)	776, 825
BspLI	GGNNCC	5 cut(s)	134, 607, 918, 985, 1133
BspPI	GGATC	1 cut(s)	360
BspT107I	GGYRCC	2 cut(s)	916, 983
BssECI	CCNNGG	2 cut(s)	70, 926
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	2 cut(s)	70, 926
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	3 cut(s)	715, 961, 1118
Bst6I	CTCTTC	2 cut(s)	17, 661
BstACI	GRCGYC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	879
BstC8I	GCNNGC	1 cut(s)	56
BstDEI	CTNAG	3 cut(s)	763, 833, 1215
BstF5I	GGATG	2 cut(s)	798, 1278
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 219, 228, 1055
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	678
BstSCI	CCNGG	3 cut(s)	94, 135, 844
BstSLI	GKGCMC	2 cut(s)	438, 919
BstV1I	GCAGC	3 cut(s)	617, 732, 1061
BstV2I	GAAGAC	1 cut(s)	217
Bsu36I	CCTNAGG	1 cut(s)	1215
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	2 cut(s)	75, 99
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	2 cut(s)	798, 1278
Cac8I	GCNNGC	1 cut(s)	56
Cfr13I	GGNCC	5 cut(s)	74, 97, 458, 470, 605
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	5 cut(s)	28, 40, 88, 726, 984
CspCI	CAANNNNNGTGG	2 cut(s)	1023, 1058
CviAII	CATG	2 cut(s)	675, 812
CviQI	GTAC	5 cut(s)	28, 40, 88, 726, 984
DdeI	CTNAG	3 cut(s)	763, 833, 1215
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	17, 661
EarI	CTCTTC	2 cut(s)	17, 661
EciI	GGCGGA	2 cut(s)	176, 357
Eco130I	CCWWGG	2 cut(s)	70, 926
Eco32I	GATATC	1 cut(s)	484
Eco47I	GGWCC	3 cut(s)	458, 470, 605
Eco57I	CTGAAG	2 cut(s)	329, 963
Eco72I	CACGTG	1 cut(s)	879
Eco81I	CCTNAGG	1 cut(s)	1215
Eco88I	CYCGRG	2 cut(s)	76, 453
EcoO109I	RGGNCCY	1 cut(s)	605
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	484
EcoT14I	CCWWGG	2 cut(s)	70, 926
ErhI	CCWWGG	2 cut(s)	70, 926
FaeI	CATG	2 cut(s)	678, 815
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	2 cut(s)	674, 811
FauI	CCCGC	1 cut(s)	434
Fnu4HI	GCNGC	3 cut(s)	631, 721, 1050
FokI	GGATG	2 cut(s)	805, 1285
Fsp4HI	GCNGC	3 cut(s)	631, 721, 1050
FspBI	CTAG	2 cut(s)	251, 894
GluI	GCNGC	3 cut(s)	631, 721, 1050
HaeIII	GGCC	2 cut(s)	75, 99
HapII	CCGG	3 cut(s)	5, 95, 845
HgaI	GACGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	678, 815
HinfI	GANTC	3 cut(s)	61, 856, 1175
HpaII	CCGG	3 cut(s)	5, 95, 845
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	957
Hpy188I	TCNGA	4 cut(s)	151, 309, 379, 855
Hpy188III	TCNNGA	5 cut(s)	453, 603, 641, 1108, 1179
Hpy8I	GTNNAC	1 cut(s)	957
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	130, 271, 483
HpyCH4III	ACNGT	3 cut(s)	715, 961, 1118
HpyCH4IV	ACGT	5 cut(s)	153, 464, 645, 878, 1260
HpyCH4V	TGCA	5 cut(s)	54, 278, 293, 411, 907
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 219, 228, 1055
HpyF3I	CTNAG	3 cut(s)	763, 833, 1215
HpySE526I	ACGT	5 cut(s)	153, 464, 645, 878, 1260
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	678, 815
KpnI	GGTACC	1 cut(s)	987
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	3 cut(s)	263, 1046, 1137
Lsp1109I	GCAGC	3 cut(s)	617, 732, 1061
LweI	GCATC	4 cut(s)	595, 1111, 1227, 1263
MaeI	CTAG	2 cut(s)	251, 894
MaeII	ACGT	5 cut(s)	153, 464, 645, 878, 1260
MaeIII	GTNAC	2 cut(s)	616, 1112
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MhlI	GDGCHC	3 cut(s)	438, 764, 919
MlyI	GAGTC	1 cut(s)	1184
MmeI	TCCRAC	2 cut(s)	174, 1176
MroXI	GAANNNNTTC	1 cut(s)	948
MseI	TTAA	3 cut(s)	282, 710, 1245
MslI	CAYNNNNRTG	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	3 cut(s)	5, 95, 845
MspR9I	CCNGG	3 cut(s)	96, 137, 846
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	4 cut(s)	51, 219, 228, 1055
NciI	CCSGG	2 cut(s)	96, 846
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	2 cut(s)	678, 815
NlaIV	GGNNCC	5 cut(s)	134, 607, 918, 985, 1133
NmuCI	GTSAC	1 cut(s)	1112
NspI	RCATGY	1 cut(s)	678
PaeR7I	CTCGAG	1 cut(s)	453
PciI	ACATGT	1 cut(s)	674
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	1 cut(s)	907
PdmI	GAANNNNTTC	1 cut(s)	948
PfeI	GAWTC	2 cut(s)	61, 856
PflMI	CCANNNNNTGG	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	3 cut(s)	632, 722, 1051
PleI	GAGTC	1 cut(s)	1183
PmaCI	CACGTG	1 cut(s)	879
PmlI	CACGTG	1 cut(s)	879
PpsI	GAGTC	1 cut(s)	1183
Ppu21I	YACGTR	1 cut(s)	879
PpuMI	RGGWCCY	1 cut(s)	605
PscI	ACATGT	1 cut(s)	674
PshBI	ATTAAT	1 cut(s)	282
Psp1406I	AACGTT	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	135
PspCI	CACGTG	1 cut(s)	879
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	5 cut(s)	134, 607, 918, 985, 1133
PspPI	GGNCC	5 cut(s)	74, 97, 458, 470, 605
PspPPI	RGGWCCY	1 cut(s)	605
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	5 cut(s)	29, 41, 89, 727, 985
RsaNI	GTAC	5 cut(s)	28, 40, 88, 726, 984
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	3 cut(s)	282, 710, 1245
SatI	GCNGC	3 cut(s)	631, 721, 1050
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	5 cut(s)	74, 97, 458, 470, 605
ScaI	AGTACT	1 cut(s)	41
SchI	GAGTC	1 cut(s)	1184
ScrFI	CCNGG	3 cut(s)	96, 137, 846
SduI	GDGCHC	3 cut(s)	438, 764, 919
SfaNI	GCATC	4 cut(s)	595, 1111, 1227, 1263
Sfr274I	CTCGAG	1 cut(s)	453
SinI	GGWCC	3 cut(s)	458, 470, 605
SlaI	CTCGAG	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	3 cut(s)	453, 612, 639
SmoI	CTYRAG	3 cut(s)	453, 612, 639
SsiI	CCGC	4 cut(s)	157, 187, 342, 441
SspMI	CTAG	2 cut(s)	251, 894
StyD4I	CCNGG	3 cut(s)	94, 135, 844
StyI	CCWWGG	2 cut(s)	70, 926
TaaI	ACNGT	3 cut(s)	715, 961, 1118
TaiI	ACGT	5 cut(s)	156, 467, 648, 881, 1263
TaqI	TCGA	4 cut(s)	36, 355, 454, 1010
TatI	WGTACW	2 cut(s)	39, 87
TfiI	GAWTC	2 cut(s)	61, 856
Tru1I	TTAA	3 cut(s)	282, 710, 1245
Tru9I	TTAA	3 cut(s)	282, 710, 1245
TseFI	GTSAC	1 cut(s)	1112
TseI	GCWGC	3 cut(s)	630, 720, 1049
Tsp45I	GTSAC	1 cut(s)	1112
TspDTI	ATGAA	6 cut(s)	441, 507, 563, 801, 828, 957
TspGWI	ACGGA	1 cut(s)	1285
Van91I	CCANNNNNTGG	1 cut(s)	467
VpaK11BI	GGWCC	3 cut(s)	458, 470, 605
VspI	ATTAAT	1 cut(s)	282
XapI	RAATTY	6 cut(s)	32, 313, 697, 948, 1187, 1229
XceI	RCATGY	1 cut(s)	678
XhoI	CTCGAG	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	948
XspI	CTAG	2 cut(s)	251, 894
ZraI	GACGTC	1 cut(s)	154
ZrmI	AGTACT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.