Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007112

Physical Location & Seq

Genomic Coordinates Reverse (-)

16042312 .. 16044414

Gene Structure 2103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g13020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGCAGGAGAAGAAGAAGGAGATTACGAAGAAGAAGAAGAAGAAGTACGAGTTCGAGTACTGCGTGGTTTGCAAGCTGAATCACGACCAAGGTCCGAGCCACAAGTACACACCCAGCCACACCAAGTCCCTCTCCGCCTTCCTTACTCGCTTCCAAGCCAAGCTCTCCGATGTCCGCTTCTTTCTCAAAAACCCTATCCCTCTCCGCCCCGAACACGCCTCCCGCAACCGCCTCTGGTGCGTTTTCTGCGAGTCCGACGTCGACGAGCTCGATAGCTCCTTCGCCTGTGGTAATGCAATTAATCACCTTGCGAACGCGGAACATCTGAAGCATTTGAAGCATTTCTTGTGGAAATACGGTGGAGGAATGTACCGCGTCGATACATTCAGAATTTCGGAAGATGAACTTGCTAAGTGGGAGAAGAAGTGTAATTCATTGAAGCTTGAAGCTGTGCCATGTGGTGAAGGATCTCGAGGACCAACATTTGGACCATCGAATGATATCCATACTGAACTGAAATACGGAATTATAGATACTTTTGAAAATAATAGTAGTTCAAGTTTTTCACATGGTGTTATGCCTTTACTATATCATACAAATGAGTATCAGGTATCCCATTCAGGACTCCCTCAAGTTACAAATGTTGGCTGCTTTTCGCAAGATGTTGCTACCTCTTCTTATCATGGGGGATCAAGTTCTGGTACAAATTCCATAAATTCAAACGCTTTAACAGTTATCAGGAGTAACCAACATTCTTTGGTTTCTAATGGTAGAAAATCCTCGGCTGATGGTTACTTCAGTAATGAAAGGATGAGAGAGGGGTCTCAGCATGAAAGAATGACAAACGAGCAGAGCAGTTCTCCAGTTTTTCAGAATCTCACCCAAATATCGTCCATGGGTCCTAAAGAGGCTAGTGGAAATGTGCACACTGGGGCACCTCCTCCTTGGCTTCAAGCAGATGAAGAAATTCAGTGTAGTGTTCCACTGAAACGAGGCAGCCTTATTCCCCCGTCAAATAAGTTGGGGAAGTCCAAGAAATTGAACCCAAACCGTGTGGGAGCAGCTTGGGCAGAAAGGAGAAAGAGGGAGATGGAGATGGAGAAAAGAGGGGAAATTGTCATGAGTGACTGTGATGCCAGTTGGCTCCCTAATTTTGGTAGAGTTTGGCAGTCCGGTAGCCGAAAGGAGTCCAGAAAAGAATTTGAGTTGGAGAAACAAAAATTACCTAAGGTTGAAAGTCAGTCGGATTTGCCAATTAAGATACAGCCTTACATCAGCAAACGAATGGTGAGTTCCATGTTCCATCTTAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCDC84

Protein Analysis

439

Amino Acids

49.47

Weight (kDa)

9.15

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24900 AT4G24900
fragaria_vesca	FvH4_5g08360 FvH4_5g08360 FvH4_5g08360 FvH4_5g08360 FvH4_5g08360
malus_domestica	MD06G1141400.v1.1 MD14G1156600.v1.1
prunus_persica	Prupe.5G150700_v2.0.a1
pyrus_communis	pycom06g13140 pycom14g13020
rosa_chinensis	RchiOBHm_Chr7g0190081 RchiOBHm_Chr7g0190091
rosa_laevigata	RLG00000004566
rosa_multiflora	Rmu_co8003618.1_g000001 Rmu_sc0000744.1_g000156 Rmu_sc0004886.1_g000009
rosa_roxburghii	Rroxscaffold_3G00264900
rosa_rugosa	Rorug06G0502100
rosa_samantha	Rh7AG107700 Rh7BG110000 Rh7CG112400 Rh7DG110800
rosa_wichuraiana	Rw7G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	934
AccB7I	CCANNNNNTGG	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	2 cut(s)	317, 375
AciI	CCGC	7 cut(s)	135, 175, 205, 223, 229, 317, 373
AclWI	GGATC	2 cut(s)	475, 697
AcsI	RAATTY	5 cut(s)	390, 706, 715, 966, 1199
AcuI	CTGAAG	2 cut(s)	347, 781
AcyI	GRCGYC	1 cut(s)	258
AdeI	CACNNNGTG	1 cut(s)	572
AfaI	GTAC	5 cut(s)	47, 59, 107, 371, 703
AfiI	CCNNNNNNNGG	2 cut(s)	485, 1154
AgsI	TTSAA	9 cut(s)	337, 439, 446, 542, 558, 720, 953, 1042, 1235
AluBI	AGCT	7 cut(s)	76, 163, 268, 276, 442, 449, 1064
AluI	AGCT	7 cut(s)	76, 163, 268, 276, 442, 449, 1064
Alw21I	GWGCWC	2 cut(s)	270, 927
Alw26I	GTCTC	1 cut(s)	828
Alw44I	GTGCAC	1 cut(s)	923
AlwI	GGATC	2 cut(s)	475, 697
Ama87I	CYCGRG	1 cut(s)	471
ApaLI	GTGCAC	1 cut(s)	923
ApeKI	GCWGC	3 cut(s)	648, 996, 1061
ApoI	RAATTY	5 cut(s)	390, 706, 715, 966, 1199
AseI	ATTAAT	1 cut(s)	300
Asp700I	GAANNNNTTC	2 cut(s)	341, 966
AspS9I	GGNCC	4 cut(s)	92, 476, 488, 899
AsuHPI	GGTGA	4 cut(s)	296, 473, 871, 1300
AvaI	CYCGRG	1 cut(s)	471
AvaII	GGWCC	4 cut(s)	92, 476, 488, 899
AxyI	CCTNAGG	1 cut(s)	1227
BaeGI	GKGCMC	2 cut(s)	927, 937
BanI	GGYRCC	1 cut(s)	934
BanII	GRGCYC	1 cut(s)	270
BarI	GAAGNNNNNNTAC	2 cut(s)	29, 61
Bbv12I	GWGCWC	2 cut(s)	270, 927
BbvI	GCAGC	3 cut(s)	635, 1008, 1073
BccI	CCATC	5 cut(s)	499, 782, 1084, 1090, 1311
BciVI	GTATCC	1 cut(s)	622
BcoDI	GTCTC	1 cut(s)	828
BfaI	CTAG	1 cut(s)	912
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	3 cut(s)	649, 997, 1062
BlsI	GCNGC	3 cut(s)	650, 998, 1063
BmcAI	AGTACT	1 cut(s)	59
Bme18I	GGWCC	4 cut(s)	92, 476, 488, 899
BmeT110I	CYCGRG	1 cut(s)	471
BmgT120I	GGNCC	4 cut(s)	92, 476, 488, 899
BmiI	GGNNCC	3 cut(s)	900, 936, 1145
BmrI	ACTGGG	1 cut(s)	939
BmsI	GCATC	1 cut(s)	1123
BmuI	ACTGGG	1 cut(s)	939
BoxI	GACNNNNGTC	1 cut(s)	90
BplI	GAGNNNNNCTC	2 cut(s)	844, 876
BpmI	CTGGAG	1 cut(s)	846
BpuEI	CTTGAG	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	828
BsaJI	CCNNGG	4 cut(s)	88, 780, 894, 944
BsaWI	WCCGGW	1 cut(s)	1172
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	485, 1154
Bse1I	ACTGG	3 cut(s)	863, 934, 1137
Bse21I	CCTNAGG	1 cut(s)	1227
BseDI	CCNNGG	4 cut(s)	88, 780, 894, 944
BseGI	GGATG	1 cut(s)	816
BseLI	CCNNNNNNNGG	2 cut(s)	485, 1154
BseMII	CTCAG	1 cut(s)	839
BseNI	ACTGG	3 cut(s)	863, 934, 1137
BseRI	GAGGAG	1 cut(s)	930
BseSI	GKGCMC	2 cut(s)	927, 937
BseXI	GCAGC	3 cut(s)	635, 1008, 1073
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	2 cut(s)	317, 375
BshNI	GGYRCC	1 cut(s)	934
BsiHKAI	GWGCWC	2 cut(s)	270, 927
BsiHKCI	CYCGRG	1 cut(s)	471
BsiSI	CCGG	1 cut(s)	1173
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	485, 1154
BsmAI	GTCTC	1 cut(s)	828
BsmFI	GGGAC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	828
BsoBI	CYCGRG	1 cut(s)	471
Bsp1286I	GDGCHC	3 cut(s)	270, 927, 937
Bsp143I	GATC	2 cut(s)	467, 689
Bsp19I	CCATGG	1 cut(s)	894
BspACI	CCGC	7 cut(s)	135, 175, 205, 223, 229, 317, 373
BspCNI	CTCAG	1 cut(s)	838
BspFNI	CGCG	2 cut(s)	317, 375
BspHI	TCATGA	1 cut(s)	1119
BspLI	GGNNCC	3 cut(s)	900, 936, 1145
BspPI	GGATC	2 cut(s)	475, 697
BspT107I	GGYRCC	1 cut(s)	934
BspTNI	GGTCTC	1 cut(s)	828
BsrI	ACTGG	3 cut(s)	863, 934, 1137
BssECI	CCNNGG	4 cut(s)	88, 780, 894, 944
BssMI	GATC	2 cut(s)	467, 689
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	3 cut(s)	88, 894, 944
Bst4CI	ACNGT	4 cut(s)	359, 733, 1052, 1130
Bst6I	CTCTTC	1 cut(s)	679
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	4 cut(s)	411, 825, 1227, 1307
BstDSI	CCRYGG	1 cut(s)	894
BstF5I	GGATG	1 cut(s)	816
BstFNI	CGCG	2 cut(s)	317, 375
BstKTI	GATC	2 cut(s)	470, 692
BstMAI	GTCTC	1 cut(s)	828
BstMBI	GATC	2 cut(s)	467, 689
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 237, 246, 337, 1067
BstNSI	RCATGY	1 cut(s)	1315
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSLI	GKGCMC	2 cut(s)	927, 937
BstUI	CGCG	2 cut(s)	317, 375
BstV1I	GCAGC	3 cut(s)	635, 1008, 1073
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
Bsu36I	CCTNAGG	1 cut(s)	1227
BsuI	GTATCC	1 cut(s)	622
BtgI	CCRYGG	1 cut(s)	894
BtsCI	GGATG	1 cut(s)	816
BtsIMutI	CAGTG	3 cut(s)	927, 977, 983
Cac8I	GCNNGC	1 cut(s)	74
CciI	TCATGA	1 cut(s)	1119
Cfr13I	GGNCC	4 cut(s)	92, 476, 488, 899
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	5 cut(s)	46, 58, 106, 370, 702
CspCI	CAANNNNNGTGG	2 cut(s)	1035, 1070
CviAII	CATG	8 cut(s)	456, 569, 683, 830, 895, 1120, 1297, 1312
CviQI	GTAC	5 cut(s)	46, 58, 106, 370, 702
DdeI	CTNAG	4 cut(s)	411, 825, 1227, 1307
DpnI	GATC	2 cut(s)	469, 691
DpnII	GATC	2 cut(s)	467, 689
DraIII	CACNNNGTG	1 cut(s)	572
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
EciI	GGCGGA	2 cut(s)	124, 194
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	3 cut(s)	88, 894, 944
Eco24I	GRGCYC	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	828
Eco32I	GATATC	1 cut(s)	502
Eco47I	GGWCC	4 cut(s)	92, 476, 488, 899
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	2 cut(s)	347, 781
Eco81I	CCTNAGG	1 cut(s)	1227
Eco88I	CYCGRG	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	899
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	3 cut(s)	88, 894, 944
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	3 cut(s)	88, 894, 944
FaeI	CATG	8 cut(s)	459, 572, 686, 833, 898, 1123, 1300, 1315
FalI	AAGNNNNNCTT	4 cut(s)	329, 361, 390, 422
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	8 cut(s)	455, 568, 682, 829, 894, 1119, 1296, 1311
FauI	CCCGC	1 cut(s)	230
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	649, 997, 1062
FokI	GGATG	1 cut(s)	823
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	3 cut(s)	649, 997, 1062
FspBI	CTAG	1 cut(s)	912
GluI	GCNGC	3 cut(s)	649, 997, 1062
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	846
HapII	CCGG	1 cut(s)	1173
HgaI	GACGC	1 cut(s)	364
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	8 cut(s)	459, 572, 686, 833, 898, 1123, 1300, 1315
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	5 cut(s)	79, 251, 624, 874, 1187
HpaII	CCGG	1 cut(s)	1173
HphI	GGTGA	4 cut(s)	296, 473, 871, 1300
Hpy166II	GTNNAC	3 cut(s)	108, 262, 925
Hpy188I	TCNGA	8 cut(s)	96, 169, 256, 327, 389, 397, 873, 1246
Hpy188III	TCNNGA	6 cut(s)	83, 471, 621, 739, 1120, 1191
Hpy8I	GTNNAC	3 cut(s)	108, 262, 925
Hpy99I	CGWCG	4 cut(s)	260, 263, 266, 380
HpyAV	CCTTC	4 cut(s)	10, 148, 289, 458
HpyCH4III	ACNGT	4 cut(s)	359, 733, 1052, 1130
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	4 cut(s)	4, 72, 296, 925
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 237, 246, 337, 1067
HpyF3I	CTNAG	4 cut(s)	411, 825, 1227, 1307
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	8 cut(s)	459, 572, 686, 833, 898, 1123, 1300, 1315
Kzo9I	GATC	2 cut(s)	467, 689
LmnI	GCTCC	3 cut(s)	281, 1058, 1149
Lsp1109I	GCAGC	3 cut(s)	635, 1008, 1073
LweI	GCATC	1 cut(s)	1123
MaeI	CTAG	1 cut(s)	912
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	4 cut(s)	634, 743, 791, 1124
MalI	GATC	2 cut(s)	469, 691
MboI	GATC	2 cut(s)	467, 689
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	3 cut(s)	270, 927, 937
MlyI	GAGTC	3 cut(s)	260, 618, 1196
MmeI	TCCRAC	3 cut(s)	279, 1188, 1224
MroXI	GAANNNNTTC	2 cut(s)	341, 966
MseI	TTAA	3 cut(s)	300, 728, 1257
MslI	CAYNNNNRTG	1 cut(s)	597
MspI	CCGG	1 cut(s)	1173
MvnI	CGCG	2 cut(s)	317, 375
MwoI	GCNNNNNNNGC	5 cut(s)	69, 237, 246, 337, 1067
NcoI	CCATGG	1 cut(s)	894
NdeII	GATC	2 cut(s)	467, 689
NlaIII	CATG	8 cut(s)	459, 572, 686, 833, 898, 1123, 1300, 1315
NlaIV	GGNNCC	3 cut(s)	900, 936, 1145
NmeAIII	GCCGAG	1 cut(s)	761
NmuCI	GTSAC	1 cut(s)	1124
NspI	RCATGY	1 cut(s)	1315
PaeR7I	CTCGAG	1 cut(s)	471
PagI	TCATGA	1 cut(s)	1119
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 267
PdmI	GAANNNNTTC	2 cut(s)	341, 966
PfeI	GAWTC	2 cut(s)	79, 874
PflMI	CCANNNNNTGG	1 cut(s)	485
PkrI	GCNGC	3 cut(s)	650, 998, 1063
PleI	GAGTC	3 cut(s)	259, 618, 1195
PpsI	GAGTC	3 cut(s)	259, 618, 1195
PpuMI	RGGWCCY	1 cut(s)	899
PshAI	GACNNNNGTC	1 cut(s)	90
PshBI	ATTAAT	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	270
Psp5II	RGGWCCY	1 cut(s)	899
PspFI	CCCAGC	1 cut(s)	113
PspN4I	GGNNCC	3 cut(s)	900, 936, 1145
PspPI	GGNCC	4 cut(s)	92, 476, 488, 899
PspPPI	RGGWCCY	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	467
RsaI	GTAC	5 cut(s)	47, 59, 107, 371, 703
RsaNI	GTAC	5 cut(s)	46, 58, 106, 370, 702
RseI	CAYNNNNRTG	1 cut(s)	597
SacI	GAGCTC	1 cut(s)	270
SalI	GTCGAC	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	300, 728, 1257
SatI	GCNGC	3 cut(s)	649, 997, 1062
Sau3AI	GATC	2 cut(s)	467, 689
Sau96I	GGNCC	4 cut(s)	92, 476, 488, 899
ScaI	AGTACT	1 cut(s)	59
SchI	GAGTC	3 cut(s)	260, 618, 1196
SduI	GDGCHC	3 cut(s)	270, 927, 937
SfaNI	GCATC	1 cut(s)	1123
Sfr274I	CTCGAG	1 cut(s)	471
SgrDI	CGTCGACG	1 cut(s)	260
SinI	GGWCC	4 cut(s)	92, 476, 488, 899
SlaI	CTCGAG	1 cut(s)	471
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	2 cut(s)	471, 630
SmoI	CTYRAG	2 cut(s)	471, 630
SsiI	CCGC	7 cut(s)	135, 175, 205, 223, 229, 317, 373
SspMI	CTAG	1 cut(s)	912
SstI	GAGCTC	1 cut(s)	270
StyI	CCWWGG	3 cut(s)	88, 894, 944
TaaI	ACNGT	4 cut(s)	359, 733, 1052, 1130
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	6 cut(s)	54, 261, 270, 378, 472, 494
TatI	WGTACW	2 cut(s)	57, 105
TfiI	GAWTC	2 cut(s)	79, 874
Tru1I	TTAA	3 cut(s)	300, 728, 1257
Tru9I	TTAA	3 cut(s)	300, 728, 1257
TscAI	CASTG	3 cut(s)	934, 977, 990
TseFI	GTSAC	1 cut(s)	1124
TseI	GCWGC	3 cut(s)	648, 996, 1061
Tsp45I	GTSAC	1 cut(s)	1124
TspDTI	ATGAA	5 cut(s)	417, 423, 819, 846, 975
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	3 cut(s)	934, 977, 990
Van91I	CCANNNNNTGG	1 cut(s)	485
VneI	GTGCAC	1 cut(s)	923
VpaK11BI	GGWCC	4 cut(s)	92, 476, 488, 899
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	5 cut(s)	390, 706, 715, 966, 1199
XceI	RCATGY	1 cut(s)	1315
XhoI	CTCGAG	1 cut(s)	471
XmiI	GTMKAC	1 cut(s)	261
XmnI	GAANNNNTTC	2 cut(s)	341, 966
XspI	CTAG	1 cut(s)	912
ZraI	GACGTC	1 cut(s)	259
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.