Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007112

Physical Location & Seq

Genomic Coordinates Reverse (-)

9460488 .. 9463202

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG110800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGAGGAGAAGGAGAAACGATCAAAGGCTCATTCGTGGAATCCTAACCCTAACCCTAAATCCAACGCCACAACAATGAAGAAGAAGCACGACTTCGAGTATTGCACGGTTTGCAAGCTGAATCACGACCAAGGTCCGAGCCACAAGTACATCCCCAGCCACACCAAGTCCCTCTCTACTTTCCTCTCTCGCTTCCAGGCCAAGCTCTCCGACGTCGTTTTCTTCCTCAAAAACCCTACCTTCCTCCGCCTCGAACACGCCGCTCGCAACCGCCTCTGGTGCGTCTTCTGCGATTTCGACATTGACGAGCGGGATAGCTCCTTCGCTTGTGGCAATGCAATTAATCACCTTGCGAGTGCCGAACATCTGAAGAATTTGAAGCACTTCTTGTGGAAATACGGTGGAGGAATGGATTCTGTCGATAAATTCAGGATATTGGAAGCTGACCTTGCTAAGTGGGAGAAGAAGTGCAAGTCATTGAAGAGTGAAGCTATTTCTGGAGGACCAATGCCAGGACCTTCAAATGATATCCATAATAAACTTGAATATGGAATTTTAGATACTTTTGAAAATAATAGTAGTTCAAGTTTTTCAAATGGTGTTATGCCTTTACTATATCATACAAATGAGAATCAGGTATCCCATTCTGGACTTTCTCAAGTTGCAAATGTTGGCTGCTTTGTGCAAGATGTTACTGCGTCCTCTTCTATTAATTCCAAAGGTTTAACAGTTAGTAGCCAGGGTTCTCTTATTTCTAATGGTAATAAAGGCTCAGCTGACGGCAATTTCAATACTGAAAGGATGAACAAGGTGTATCAGCACGGAAGAATGACAATAGGACAGAGCAGTTCTCAAGGTGTTCAGAATCTCACTCAAATTCCTTCCAAGGGTCCGAAAGAGGCCGGTGGAAATGTTTATACTGGAGCACTTCCTCCTTGGTTTGCAGCAGATGAAGAAAATCAGCTTAGTATTCCAATACAACCAGTTTCTGGTACCCTTCTTCCTCCGTCAAGTAAGTCAGGGAAGTCCAAGAAATTAAACCCAAAACGAGTGGGAGCAGCTTGGGCAGAAAGGAGAAAGAGGGAGCTGGAGATGGAACAAAGGGGTGAGATTGTCAAGAGCGATTATGATGCTAATTGGCTCCCCAATTTTGGTGGAGTTTGGCAATCTGGTACCCGGAAAGAGACTAAAAAAGAATTTGAGTTGGAGAAACTTAATTCAGTTAAGGTTGAAAGTCAATCTGAGATGCCAATCAAGATACAGCCTTACGTCAGCAAAAGGATGCGAACTGGTGCAAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCDC84

Protein Analysis

434

Amino Acids

48.31

Weight (kDa)

9.19

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC84	PF14968	34 - 404	1.8e-91	Coiled coil protein 84

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24900 AT4G24900
fragaria_vesca	FvH4_5g08360 FvH4_5g08360 FvH4_5g08360 FvH4_5g08360 FvH4_5g08360
malus_domestica	MD06G1141400.v1.1 MD14G1156600.v1.1
prunus_persica	Prupe.5G150700_v2.0.a1
pyrus_communis	pycom06g13140 pycom14g13020
rosa_chinensis	RchiOBHm_Chr7g0190081 RchiOBHm_Chr7g0190091
rosa_laevigata	RLG00000004566
rosa_multiflora	Rmu_co8003618.1_g000001 Rmu_sc0000744.1_g000156 Rmu_sc0004886.1_g000009
rosa_roxburghii	Rroxscaffold_3G00264900
rosa_rugosa	Rorug06G0502100
rosa_samantha	Rh7AG107700 Rh7BG110000 Rh7CG112400 Rh7DG110800
rosa_wichuraiana	Rw7G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
Acc65I	GGTACC	2 cut(s)	992, 1172
AccB1I	GGYRCC	2 cut(s)	992, 1172
AccB7I	CCANNNNNTGG	1 cut(s)	989
AccBSI	CCGCTC	2 cut(s)	263, 310
AciI	CCGC	4 cut(s)	247, 261, 271, 310
AcsI	RAATTY	5 cut(s)	373, 425, 552, 876, 1196
AcuI	CTGAAG	1 cut(s)	389
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	3 cut(s)	149, 994, 1174
AfiI	CCNNNNNNNGG	4 cut(s)	512, 887, 989, 1151
AgsI	TTSAA	9 cut(s)	379, 481, 522, 545, 569, 585, 594, 790, 1232
AjnI	CCWGG	3 cut(s)	195, 511, 738
AluBI	AGCT	9 cut(s)	118, 205, 318, 443, 491, 776, 964, 1061, 1087
AluI	AGCT	9 cut(s)	118, 205, 318, 443, 491, 776, 964, 1061, 1087
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	1 cut(s)	1178
AlwNI	CAGNNNCTG	1 cut(s)	989
AoxI	GGCC	2 cut(s)	198, 900
ApeKI	GCWGC	3 cut(s)	675, 944, 1058
ApoI	RAATTY	5 cut(s)	373, 425, 552, 876, 1196
AseI	ATTAAT	2 cut(s)	342, 711
Asp700I	GAANNNNTTC	2 cut(s)	383, 412
Asp718I	GGTACC	2 cut(s)	992, 1172
AspS9I	GGNCC	4 cut(s)	134, 503, 515, 890
AsuC2I	CCSGG	1 cut(s)	1177
AsuHPI	GGTGA	2 cut(s)	338, 1118
AvaII	GGWCC	4 cut(s)	134, 503, 515, 890
BanI	GGYRCC	2 cut(s)	992, 1172
BbsI	GAAGAC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	928
BbvI	GCAGC	3 cut(s)	662, 956, 1070
BccI	CCATC	1 cut(s)	1087
BceAI	ACGGC	1 cut(s)	796
BcgI	CGANNNNNNTGC	2 cut(s)	1112, 1146
BciT130I	CCWGG	3 cut(s)	197, 513, 740
BciVI	GTATCC	1 cut(s)	649
BcnI	CCSGG	1 cut(s)	1177
BcoDI	GTCTC	1 cut(s)	1178
BfuI	GTATCC	1 cut(s)	649
BisI	GCNGC	4 cut(s)	261, 676, 945, 1059
BlpI	GCTNAGC	1 cut(s)	772
BlsI	GCNGC	4 cut(s)	262, 677, 946, 1060
Bme1390I	CCNGG	4 cut(s)	197, 513, 740, 1177
Bme18I	GGWCC	4 cut(s)	134, 503, 515, 890
BmgT120I	GGNCC	4 cut(s)	134, 503, 515, 890
BmiI	GGNNCC	4 cut(s)	891, 994, 1142, 1174
BmrFI	CCNGG	4 cut(s)	197, 513, 740, 1177
BmsI	GCATC	3 cut(s)	1120, 1236, 1272
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	277
BplI	GAGNNNNNCTC	2 cut(s)	835, 867
BpmI	CTGGAG	3 cut(s)	519, 942, 1109
Bpu1102I	GCTNAGC	1 cut(s)	772
BpuEI	CTTGAG	2 cut(s)	642, 837
BpuMI	CCSGG	1 cut(s)	1177
BsaBI	GATNNNNATC	1 cut(s)	1250
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	4 cut(s)	130, 739, 885, 935
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	4 cut(s)	512, 887, 989, 1151
Bse118I	RCCGGY	1 cut(s)	902
Bse1I	ACTGG	3 cut(s)	925, 983, 1294
Bse3DI	GCAATG	1 cut(s)	340
Bse8I	GATNNNNATC	1 cut(s)	1250
BseBI	CCWGG	3 cut(s)	197, 513, 740
BseDI	CCNNGG	4 cut(s)	130, 739, 885, 935
BseGI	GGATG	3 cut(s)	150, 807, 1287
BseJI	GATNNNNATC	1 cut(s)	1250
BseLI	CCNNNNNNNGG	4 cut(s)	512, 887, 989, 1151
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	2 cut(s)	786, 1233
BseNI	ACTGG	3 cut(s)	925, 983, 1294
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	662, 956, 1070
BseYI	CCCAGC	1 cut(s)	155
BshFI	GGCC	2 cut(s)	200, 902
BshNI	GGYRCC	2 cut(s)	992, 1172
BsiHKAI	GWGCWC	1 cut(s)	928
BsiSI	CCGG	2 cut(s)	903, 1177
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	4 cut(s)	512, 887, 989, 1151
BsmAI	GTCTC	1 cut(s)	1178
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	200, 902
Bsp1286I	GDGCHC	1 cut(s)	928
Bsp143I	GATC	1 cut(s)	20
Bsp1720I	GCTNAGC	1 cut(s)	772
BspACI	CCGC	4 cut(s)	247, 261, 271, 310
BspANI	GGCC	2 cut(s)	200, 902
BspCNI	CTCAG	2 cut(s)	785, 1234
BspLI	GGNNCC	4 cut(s)	891, 994, 1142, 1174
BspT107I	GGYRCC	2 cut(s)	992, 1172
BsrBI	CCGCTC	2 cut(s)	263, 310
BsrDI	GCAATG	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	902
BsrI	ACTGG	3 cut(s)	925, 983, 1294
BssAI	RCCGGY	1 cut(s)	902
BssECI	CCNNGG	4 cut(s)	130, 739, 885, 935
BssMI	GATC	1 cut(s)	20
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	3 cut(s)	130, 885, 935
Bst2UI	CCWGG	3 cut(s)	197, 513, 740
Bst4CI	ACNGT	3 cut(s)	109, 401, 730
Bst6I	CTCTTC	2 cut(s)	476, 709
BstACI	GRCGYC	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	116, 265
BstDEI	CTNAG	4 cut(s)	453, 772, 965, 1242
BstF5I	GGATG	3 cut(s)	150, 807, 1287
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	1178
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 279, 288, 449, 1064
BstNI	CCWGG	3 cut(s)	197, 513, 740
BstPAI	GACNNNNGTC	1 cut(s)	132
BstSCI	CCNGG	4 cut(s)	195, 511, 738, 1175
BstV1I	GCAGC	3 cut(s)	662, 956, 1070
BstV2I	GAAGAC	1 cut(s)	277
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	200, 902
BtsCI	GGATG	3 cut(s)	150, 807, 1287
Cac8I	GCNNGC	2 cut(s)	116, 265
CaiI	CAGNNNCTG	1 cut(s)	989
Cfr10I	RCCGGY	1 cut(s)	902
Cfr13I	GGNCC	4 cut(s)	134, 503, 515, 890
CseI	GACGC	2 cut(s)	271, 687
Csp6I	GTAC	3 cut(s)	148, 993, 1173
CspCI	CAANNNNNGTGG	4 cut(s)	1032, 1067, 1135, 1170
CviQI	GTAC	3 cut(s)	148, 993, 1173
DdeI	CTNAG	4 cut(s)	453, 772, 965, 1242
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eam1104I	CTCTTC	2 cut(s)	476, 709
EarI	CTCTTC	2 cut(s)	476, 709
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	3 cut(s)	130, 885, 935
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	4 cut(s)	134, 503, 515, 890
Eco57I	CTGAAG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRII	CCWGG	3 cut(s)	195, 511, 738
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	3 cut(s)	130, 885, 935
ErhI	CCWWGG	3 cut(s)	130, 885, 935
FaiI	YATR	7 cut(s)	534, 549, 605, 616, 621, 918, 1128
FalI	AAGNNNNNCTT	6 cut(s)	77, 109, 371, 403, 432, 464
FaqI	GGGAC	1 cut(s)	154
FauI	CCCGC	1 cut(s)	303
Fnu4HI	GCNGC	4 cut(s)	261, 676, 945, 1059
FokI	GGATG	3 cut(s)	137, 814, 1294
Fsp4HI	GCNGC	4 cut(s)	261, 676, 945, 1059
GluI	GCNGC	4 cut(s)	261, 676, 945, 1059
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	3 cut(s)	519, 942, 1109
HaeIII	GGCC	2 cut(s)	200, 902
HapII	CCGG	2 cut(s)	903, 1177
HgaI	GACGC	2 cut(s)	271, 687
Hin1I	GRCGYC	1 cut(s)	213
HinfI	GANTC	5 cut(s)	40, 121, 413, 631, 865
HpaII	CCGG	2 cut(s)	903, 1177
HphI	GGTGA	2 cut(s)	338, 1118
Hpy188I	TCNGA	6 cut(s)	138, 211, 369, 864, 894, 1243
Hpy188III	TCNNGA	6 cut(s)	125, 430, 498, 648, 1117, 1255
Hpy99I	CGWCG	2 cut(s)	215, 218
HpyAV	CCTTC	6 cut(s)	4, 250, 331, 528, 891, 1007
HpyCH4III	ACNGT	3 cut(s)	109, 401, 730
HpyCH4IV	ACGT	2 cut(s)	213, 1269
HpyCH4V	TGCA	8 cut(s)	105, 114, 338, 471, 665, 685, 944, 1295
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 279, 288, 449, 1064
HpyF3I	CTNAG	4 cut(s)	453, 772, 965, 1242
HpySE526I	ACGT	2 cut(s)	213, 1269
Hsp92I	GRCGYC	1 cut(s)	213
KpnI	GGTACC	2 cut(s)	996, 1176
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	5 cut(s)	323, 923, 1055, 1084, 1146
Lsp1109I	GCAGC	3 cut(s)	662, 956, 1070
LweI	GCATC	3 cut(s)	1120, 1236, 1272
MaeII	ACGT	2 cut(s)	213, 1269
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	1 cut(s)	22
MbiI	CCGCTC	2 cut(s)	263, 310
MboI	GATC	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	928
MmeI	TCCRAC	3 cut(s)	87, 234, 1185
MroXI	GAANNNNTTC	2 cut(s)	383, 412
MseI	TTAA	6 cut(s)	342, 711, 725, 1037, 1215, 1224
MslI	CAYNNNNRTG	2 cut(s)	74, 624
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	2 cut(s)	903, 1177
MspR9I	CCNGG	4 cut(s)	197, 513, 740, 1177
MvaI	CCWGG	3 cut(s)	197, 513, 740
MwoI	GCNNNNNNNGC	5 cut(s)	111, 279, 288, 449, 1064
NciI	CCSGG	1 cut(s)	1177
NdeII	GATC	1 cut(s)	20
NlaIV	GGNNCC	4 cut(s)	891, 994, 1142, 1174
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PdmI	GAANNNNTTC	2 cut(s)	383, 412
PfeI	GAWTC	5 cut(s)	40, 121, 413, 631, 865
PflMI	CCANNNNNTGG	1 cut(s)	989
PkrI	GCNGC	4 cut(s)	262, 677, 946, 1060
PpuMI	RGGWCCY	1 cut(s)	515
PshAI	GACNNNNGTC	1 cut(s)	132
PshBI	ATTAAT	2 cut(s)	342, 711
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	3 cut(s)	195, 511, 738
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	3 cut(s)	195, 511, 738
PspN4I	GGNNCC	4 cut(s)	891, 994, 1142, 1174
PspPI	GGNCC	4 cut(s)	134, 503, 515, 890
PspPPI	RGGWCCY	1 cut(s)	515
PsrI	GAACNNNNNNTAC	2 cut(s)	727, 759
PstNI	CAGNNNCTG	1 cut(s)	989
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	3 cut(s)	149, 994, 1174
RsaNI	GTAC	3 cut(s)	148, 993, 1173
RseI	CAYNNNNRTG	2 cut(s)	74, 624
SaqAI	TTAA	6 cut(s)	342, 711, 725, 1037, 1215, 1224
SatI	GCNGC	4 cut(s)	261, 676, 945, 1059
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	4 cut(s)	134, 503, 515, 890
ScrFI	CCNGG	4 cut(s)	197, 513, 740, 1177
SduI	GDGCHC	1 cut(s)	928
SfaNI	GCATC	3 cut(s)	1120, 1236, 1272
SinI	GGWCC	4 cut(s)	134, 503, 515, 890
SmiMI	CAYNNNNRTG	2 cut(s)	74, 624
SmlI	CTYRAG	2 cut(s)	657, 852
SmoI	CTYRAG	2 cut(s)	657, 852
SsiI	CCGC	4 cut(s)	247, 261, 271, 310
StyD4I	CCNGG	4 cut(s)	195, 511, 738, 1175
StyI	CCWWGG	3 cut(s)	130, 885, 935
TaaI	ACNGT	3 cut(s)	109, 401, 730
TaiI	ACGT	2 cut(s)	216, 1272
TaqI	TCGA	4 cut(s)	96, 252, 297, 420
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	5 cut(s)	40, 121, 413, 631, 865
Tru1I	TTAA	6 cut(s)	342, 711, 725, 1037, 1215, 1224
Tru9I	TTAA	6 cut(s)	342, 711, 725, 1037, 1215, 1224
TseI	GCWGC	3 cut(s)	675, 944, 1058
TspDTI	ATGAA	3 cut(s)	92, 818, 966
TspGWI	ACGGA	2 cut(s)	837, 996
Van91I	CCANNNNNTGG	1 cut(s)	989
VpaK11BI	GGWCC	4 cut(s)	134, 503, 515, 890
VspI	ATTAAT	2 cut(s)	342, 711
XapI	RAATTY	5 cut(s)	373, 425, 552, 876, 1196
XmnI	GAANNNNTTC	2 cut(s)	383, 412
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.