Rw7G009310

TITAN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007112
Physical Location & Seq
Reverse (-)
8744065 .. 8746783
2719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009310.1

Sequence Viewer

Length: 1146 bp
ATGGAGGAGAAGGAGAAACGATCAAAGGCTCATTCGTGGAACCCTAACCCTAAATCCAACGCCACAACAAAGAAGAAGAAGCACGACTTCGAGTATTGCACGGTTTGCAAGCTGAATCACGACCAAGGTCCGAGCCACAAGTACATCCCCAGCCACACCAAGTCCCTCTCTACTTTCCTCTCTCGCTTCCAGGCCAAGCTCTCCGACGTCGTTTTCTTCCTCAAAAACCCTACCTTCCTCCGCCTCGAACACGCCGCTCGCAACCGCCTCTGGTGCGTCTTCTGCGATTTCGACATTGACGAGCGGGATAGCTCCTTCGCTTGTGGCAATGCAATTAATCACCTTGCGAGTGCCGAACATCTGAAGAATTTGAAGCACTTCTTGTGGAAATACGGTGGAGGAATGGATTCTGTCGATAAATTCAGGATATTGGAAGCTGACCTTGCTAAGTGGGAGAAGAAGTGCAAGTCATTGAAGAGTGAAGCTATTTCTGGAGGACCAATGCCAGGACCTTCAAATGATATCCATAATAAACTTGAATATGGAATTTTAGATACTTTTGAAAATAATATTAGTAGCCAGGGTTCTCTTATTTCTAATGGTAATAAAGGCTCAGCTGACGGCAATTTCAATACTGAAAGGATGAACAAGGTGTATCAGCATGGAAGAATGACAATAGGACAGAGCAGTTCTCAAGGTGTTCAGAATCTCACTCAAATTCCTTCCAAGGGTCCGAAAGAGGCCAGTGGAAATGTGTATACTGGAGCACTTCCTCCTTGGTTTGCAGCAGATGAAGAAAATCAGCTTAGTATTCCAATACAACCAGTTTCTGGTACCCTTCTTCCTCCGTCAAGTAAGTCAGGGAAGTCCAAGAAATTAAACCCAAAACGAGTGGGAGCAGCTTGGGCAGAAAGGAGAAAGAGGGAGCTGGAGATGGAACAAAGGGGTGAGATTGTCAAGAGCGATTATGATGCTAATTGGCTCCCCAATTTTGGTGGAGTTTGGCAATCTGGTACCCGGAAAGAGACTAAAAAAGAATTTGAGTTGGAGAAACTTAATTTAGTTAAGGTTGAAAGTCAATCTGAGATGCCAATCAAGATACAGCCTTACGTCAGCAAAAGGATGCGAACTGGTGCAAGTGAATAA

Protein Analysis

381

Amino Acids

42.9

Weight (kDa)

9.34

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC84 PF14968 32 - 351 4.7e-82 Coiled coil protein 84
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 210
Acc65I GGTACC 2 cut(s) 833, 1013
AccB1I GGYRCC 2 cut(s) 833, 1013
AccB7I CCANNNNNTGG 1 cut(s) 830
AccBSI CCGCTC 2 cut(s) 257, 304
AccI GTMKAC 1 cut(s) 758
AciI CCGC 4 cut(s) 241, 255, 265, 304
AcsI RAATTY 5 cut(s) 367, 419, 546, 717, 1037
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 3 cut(s) 143, 835, 1015
AfiI CCNNNNNNNGG 4 cut(s) 506, 728, 830, 992
AgsI TTSAA 7 cut(s) 373, 475, 516, 539, 563, 631, 1073
AjnI CCWGG 3 cut(s) 189, 505, 579
AluBI AGCT 9 cut(s) 112, 199, 312, 437, 485, 617, 805, 902, 928
AluI AGCT 9 cut(s) 112, 199, 312, 437, 485, 617, 805, 902, 928
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 1 cut(s) 1019
AlwNI CAGNNNCTG 1 cut(s) 830
AoxI GGCC 2 cut(s) 192, 741
ApeKI GCWGC 2 cut(s) 785, 899
ApoI RAATTY 5 cut(s) 367, 419, 546, 717, 1037
AseI ATTAAT 1 cut(s) 336
Asp700I GAANNNNTTC 2 cut(s) 377, 406
Asp718I GGTACC 2 cut(s) 833, 1013
AspS9I GGNCC 4 cut(s) 128, 497, 509, 731
AsuC2I CCSGG 1 cut(s) 1018
AsuHPI GGTGA 2 cut(s) 332, 959
AvaII GGWCC 4 cut(s) 128, 497, 509, 731
BanI GGYRCC 2 cut(s) 833, 1013
BbsI GAAGAC 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 769
BbvI GCAGC 2 cut(s) 797, 911
BccI CCATC 1 cut(s) 928
BceAI ACGGC 1 cut(s) 637
BcgI CGANNNNNNTGC 2 cut(s) 953, 987
BciT130I CCWGG 3 cut(s) 191, 507, 581
BcnI CCSGG 1 cut(s) 1018
BcoDI GTCTC 1 cut(s) 1019
BisI GCNGC 3 cut(s) 255, 786, 900
BlpI GCTNAGC 1 cut(s) 613
BlsI GCNGC 3 cut(s) 256, 787, 901
Bme1390I CCNGG 4 cut(s) 191, 507, 581, 1018
Bme18I GGWCC 4 cut(s) 128, 497, 509, 731
BmgT120I GGNCC 4 cut(s) 128, 497, 509, 731
BmiI GGNNCC 5 cut(s) 41, 732, 835, 983, 1015
BmrFI CCNGG 4 cut(s) 191, 507, 581, 1018
BmsI GCATC 3 cut(s) 961, 1077, 1113
BoxI GACNNNNGTC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 271
BplI GAGNNNNNCTC 2 cut(s) 676, 708
BpmI CTGGAG 3 cut(s) 513, 783, 950
Bpu1102I GCTNAGC 1 cut(s) 613
BpuEI CTTGAG 1 cut(s) 678
BpuMI CCSGG 1 cut(s) 1018
BsaBI GATNNNNATC 1 cut(s) 1091
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 4 cut(s) 124, 580, 726, 776
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 4 cut(s) 506, 728, 830, 992
Bse1I ACTGG 4 cut(s) 744, 766, 824, 1135
Bse3DI GCAATG 1 cut(s) 334
Bse8I GATNNNNATC 1 cut(s) 1091
BseBI CCWGG 3 cut(s) 191, 507, 581
BseDI CCNNGG 4 cut(s) 124, 580, 726, 776
BseGI GGATG 3 cut(s) 144, 648, 1128
BseJI GATNNNNATC 1 cut(s) 1091
BseLI CCNNNNNNNGG 4 cut(s) 506, 728, 830, 992
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 2 cut(s) 627, 1074
BseNI ACTGG 4 cut(s) 744, 766, 824, 1135
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 797, 911
BseYI CCCAGC 1 cut(s) 149
BshFI GGCC 2 cut(s) 194, 743
BshNI GGYRCC 2 cut(s) 833, 1013
BsiHKAI GWGCWC 1 cut(s) 769
BsiSI CCGG 1 cut(s) 1018
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 4 cut(s) 506, 728, 830, 992
BsmAI GTCTC 1 cut(s) 1019
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 2 cut(s) 194, 743
Bsp1286I GDGCHC 1 cut(s) 769
Bsp143I GATC 1 cut(s) 20
Bsp1720I GCTNAGC 1 cut(s) 613
BspACI CCGC 4 cut(s) 241, 255, 265, 304
BspANI GGCC 2 cut(s) 194, 743
BspCNI CTCAG 2 cut(s) 626, 1075
BspLI GGNNCC 5 cut(s) 41, 732, 835, 983, 1015
BspT107I GGYRCC 2 cut(s) 833, 1013
BsrBI CCGCTC 2 cut(s) 257, 304
BsrDI GCAATG 1 cut(s) 334
BsrI ACTGG 4 cut(s) 744, 766, 824, 1135
BssECI CCNNGG 4 cut(s) 124, 580, 726, 776
BssMI GATC 1 cut(s) 20
BssNAI GTATAC 1 cut(s) 759
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 3 cut(s) 124, 726, 776
Bst1107I GTATAC 1 cut(s) 759
Bst2UI CCWGG 3 cut(s) 191, 507, 581
Bst4CI ACNGT 2 cut(s) 103, 395
Bst6I CTCTTC 1 cut(s) 470
BstACI GRCGYC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 110, 259
BstDEI CTNAG 4 cut(s) 447, 613, 806, 1083
BstF5I GGATG 3 cut(s) 144, 648, 1128
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 1019
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 5 cut(s) 105, 273, 282, 443, 905
BstNI CCWGG 3 cut(s) 191, 507, 581
BstPAI GACNNNNGTC 1 cut(s) 126
BstSCI CCNGG 4 cut(s) 189, 505, 579, 1016
BstV1I GCAGC 2 cut(s) 797, 911
BstV2I GAAGAC 1 cut(s) 271
BstZ17I GTATAC 1 cut(s) 759
BsuRI GGCC 2 cut(s) 194, 743
BtsCI GGATG 3 cut(s) 144, 648, 1128
BtsIMutI CAGTG 1 cut(s) 751
Cac8I GCNNGC 2 cut(s) 110, 259
CaiI CAGNNNCTG 1 cut(s) 830
Cfr13I GGNCC 4 cut(s) 128, 497, 509, 731
CseI GACGC 1 cut(s) 265
Csp6I GTAC 3 cut(s) 142, 834, 1014
CspCI CAANNNNNGTGG 4 cut(s) 873, 908, 976, 1011
CviAII CATG 1 cut(s) 662
CviQI GTAC 3 cut(s) 142, 834, 1014
DdeI CTNAG 4 cut(s) 447, 613, 806, 1083
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
EciI GGCGGA 1 cut(s) 230
Eco130I CCWWGG 3 cut(s) 124, 726, 776
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 4 cut(s) 128, 497, 509, 731
Eco57I CTGAAG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 509
EcoRII CCWGG 3 cut(s) 189, 505, 579
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 3 cut(s) 124, 726, 776
ErhI CCWWGG 3 cut(s) 124, 726, 776
FaeI CATG 1 cut(s) 665
FaiI YATR 5 cut(s) 528, 543, 663, 759, 969
FalI AAGNNNNNCTT 6 cut(s) 71, 103, 365, 397, 426, 458
FaqI GGGAC 1 cut(s) 148
FatI CATG 1 cut(s) 661
FauI CCCGC 1 cut(s) 297
FblI GTMKAC 1 cut(s) 758
Fnu4HI GCNGC 3 cut(s) 255, 786, 900
FokI GGATG 3 cut(s) 131, 655, 1135
Fsp4HI GCNGC 3 cut(s) 255, 786, 900
GluI GCNGC 3 cut(s) 255, 786, 900
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 3 cut(s) 513, 783, 950
HaeIII GGCC 2 cut(s) 194, 743
HapII CCGG 1 cut(s) 1018
HgaI GACGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 1 cut(s) 665
HinfI GANTC 3 cut(s) 115, 407, 706
HpaII CCGG 1 cut(s) 1018
HphI GGTGA 2 cut(s) 332, 959
Hpy166II GTNNAC 1 cut(s) 759
Hpy188I TCNGA 6 cut(s) 132, 205, 363, 705, 735, 1084
Hpy188III TCNNGA 5 cut(s) 119, 424, 492, 958, 1096
Hpy8I GTNNAC 1 cut(s) 759
Hpy99I CGWCG 2 cut(s) 209, 212
HpyAV CCTTC 6 cut(s) 4, 244, 325, 522, 732, 848
HpyCH4III ACNGT 2 cut(s) 103, 395
HpyCH4IV ACGT 2 cut(s) 207, 1110
HpyCH4V TGCA 6 cut(s) 99, 108, 332, 465, 785, 1136
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 273, 282, 443, 905
HpyF3I CTNAG 4 cut(s) 447, 613, 806, 1083
HpySE526I ACGT 2 cut(s) 207, 1110
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 1 cut(s) 665
KpnI GGTACC 2 cut(s) 837, 1017
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 5 cut(s) 317, 764, 896, 925, 987
Lsp1109I GCAGC 2 cut(s) 797, 911
LweI GCATC 3 cut(s) 961, 1077, 1113
MaeII ACGT 2 cut(s) 207, 1110
MalI GATC 1 cut(s) 22
MbiI CCGCTC 2 cut(s) 257, 304
MboI GATC 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 769
MmeI TCCRAC 3 cut(s) 81, 228, 1026
MroXI GAANNNNTTC 2 cut(s) 377, 406
MseI TTAA 4 cut(s) 336, 878, 1056, 1065
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 1 cut(s) 1018
MspR9I CCNGG 4 cut(s) 191, 507, 581, 1018
MvaI CCWGG 3 cut(s) 191, 507, 581
MwoI GCNNNNNNNGC 5 cut(s) 105, 273, 282, 443, 905
NciI CCSGG 1 cut(s) 1018
NdeII GATC 1 cut(s) 20
NlaIII CATG 1 cut(s) 665
NlaIV GGNNCC 5 cut(s) 41, 732, 835, 983, 1015
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdmI GAANNNNTTC 2 cut(s) 377, 406
PfeI GAWTC 3 cut(s) 115, 407, 706
PflMI CCANNNNNTGG 1 cut(s) 830
PkrI GCNGC 3 cut(s) 256, 787, 901
PpuMI RGGWCCY 1 cut(s) 509
PshAI GACNNNNGTC 1 cut(s) 126
PshBI ATTAAT 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 509
Psp6I CCWGG 3 cut(s) 189, 505, 579
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 3 cut(s) 189, 505, 579
PspN4I GGNNCC 5 cut(s) 41, 732, 835, 983, 1015
PspPI GGNCC 4 cut(s) 128, 497, 509, 731
PspPPI RGGWCCY 1 cut(s) 509
PsrI GAACNNNNNNTAC 2 cut(s) 568, 600
PstNI CAGNNNCTG 1 cut(s) 830
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 3 cut(s) 143, 835, 1015
RsaNI GTAC 3 cut(s) 142, 834, 1014
SaqAI TTAA 4 cut(s) 336, 878, 1056, 1065
SatI GCNGC 3 cut(s) 255, 786, 900
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 4 cut(s) 128, 497, 509, 731
ScrFI CCNGG 4 cut(s) 191, 507, 581, 1018
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 3 cut(s) 961, 1077, 1113
SinI GGWCC 4 cut(s) 128, 497, 509, 731
SmlI CTYRAG 1 cut(s) 693
SmoI CTYRAG 1 cut(s) 693
SsiI CCGC 4 cut(s) 241, 255, 265, 304
SspI AATATT 1 cut(s) 571
StyD4I CCNGG 4 cut(s) 189, 505, 579, 1016
StyI CCWWGG 3 cut(s) 124, 726, 776
TaaI ACNGT 2 cut(s) 103, 395
TaiI ACGT 2 cut(s) 210, 1113
TaqI TCGA 4 cut(s) 90, 246, 291, 414
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 3 cut(s) 115, 407, 706
Tru1I TTAA 4 cut(s) 336, 878, 1056, 1065
Tru9I TTAA 4 cut(s) 336, 878, 1056, 1065
TscAI CASTG 1 cut(s) 751
TseI GCWGC 2 cut(s) 785, 899
TspDTI ATGAA 2 cut(s) 659, 807
TspGWI ACGGA 1 cut(s) 837
TspRI CASTG 1 cut(s) 751
Van91I CCANNNNNTGG 1 cut(s) 830
VpaK11BI GGWCC 4 cut(s) 128, 497, 509, 731
VspI ATTAAT 1 cut(s) 336
XapI RAATTY 5 cut(s) 367, 419, 546, 717, 1037
XmiI GTMKAC 1 cut(s) 758
XmnI GAANNNNTTC 2 cut(s) 377, 406
ZraI GACGTC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.