Rh7BG110000

TITAN-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007112
Physical Location & Seq
Reverse (-)
8306023 .. 8311370
5348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG110000.1

Sequence Viewer

Length: 1320 bp
ATGGAGGAGAAGGAGAAACGATCAAAGGCTCACTCATGGAACCCTAACCCTAAATCCAACGCCACAACAATGAAGAAGAAGAAGCACGACTTCGAGTATTGCACGGTTTGCAAGCTGAATCACGACCAAGGTCCGAGCCACAAGTACATCCCCAGCCACACCAAGTCCCTCTCTACTTTCCTCTCTCGCTTCCAGGCCAAGCTCTCCGACGTCGTTTTCTTCCTCAAAAACCCTACCTTCCTCCGCCTCGAACACGCCGCTCGCAACCGCCTCTGGTGCGTCTTCTGCGATTTCGACATTGACGAGCGAGATAGCTCCTTCGCTTGTGGCAATGCAATTAATCACCTTGCGAGTGCCGAACATCTGAAGAATTTGAAGCACTTTTTGTGGAAATACGGTGGAGGAATGGATTCTGTAGATAAATTCAGGATATCGGAAGCTGACCTTGCTAAGTGGGAGAAGAAGTGCAAGTCATTGAAGAGTGAAGCTATTTCTGGAGGACCAATGCCAGGACCTTCAAATGATATCCATAATAAACTTGAATATGGAATTTTAGATACTTTTGAAAATAATAGTAGTTCAAGTTTTTCAAATGGTGTTATGCCTTTACTATATCATACAAATGAGAATCAGGTATCCCATTCTGGACTTTCTCAAGTTGCAAATGTTGGCTGCTTTGTGCAAGATGTTACTACCTCCTCTTCTATAAATTCCAAAGGTTTAACAGTTAGTAGCCAGGGTTCTCTTATTTCTAATGGTAATAAAGGCTCAGCTGACGGCAATTTCAATAATGAAAGGATGAACAAGGTGTATCAGCACGGAAGAATGACAATAGGACAGAGCAGTTCTCAAGGTGTTCAGAATCTCACTCAAATTCCTTCCAAGGGTCCGAAAGAGGCCAGTGGAAATGTGTATACTGGAGCACTTCCTCCTTGGTTTGCAGCAGATGAAGAAAATCAGCTTAGTATTCCAATACAACCAGTTTCTGGTACCCTTCTTCCTCCGTCAAATAAGTCAGGGAAGTCCAAGAAATTAAACTCAAAACGAGTGGGAGCTGCTTGGGCAGAAAGGAGAAAGAGGGAGCTGGAGATGGAACAAAGGGGTGAGATTGTCAAGAGCGATTATGATGCTAATTGGCTCCCCAATTTTGGTGGAGTTTGGCAATCTGGTACCCGGAAAGAGACTAAAAAAGAATTTGAGTTGGAGAAACTTAATTTAGTTAAGGTTGAAAGTCAATCTGAGATGCCAATCAAGATACAGCCTTACGTCAGCAAAAGGATGGTGAGTTCCATGTTCCCACTTACTGTGTCTGTTTGTTGA

Protein Analysis

439

Amino Acids

48.97

Weight (kDa)

9.21

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC84 PF14968 33 - 403 4.3e-91 Coiled coil protein 84
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 213
Acc65I GGTACC 2 cut(s) 989, 1169
AccB1I GGYRCC 2 cut(s) 989, 1169
AccB7I CCANNNNNTGG 1 cut(s) 986
AccBSI CCGCTC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 914
AciI CCGC 3 cut(s) 244, 258, 268
AcsI RAATTY 6 cut(s) 370, 422, 549, 709, 873, 1193
AcuI CTGAAG 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 3 cut(s) 146, 991, 1171
AfiI CCNNNNNNNGG 4 cut(s) 509, 884, 986, 1148
AgsI TTSAA 9 cut(s) 376, 478, 519, 542, 566, 582, 591, 787, 1229
AjnI CCWGG 3 cut(s) 192, 508, 735
AloI GAACNNNNNNTCC 2 cut(s) 1270, 1302
AluBI AGCT 9 cut(s) 115, 202, 315, 440, 488, 773, 961, 1055, 1084
AluI AGCT 9 cut(s) 115, 202, 315, 440, 488, 773, 961, 1055, 1084
Alw21I GWGCWC 1 cut(s) 925
Alw26I GTCTC 1 cut(s) 1175
AlwNI CAGNNNCTG 1 cut(s) 986
AoxI GGCC 2 cut(s) 195, 897
ApeKI GCWGC 3 cut(s) 672, 941, 1055
ApoI RAATTY 6 cut(s) 370, 422, 549, 709, 873, 1193
AseI ATTAAT 1 cut(s) 339
Asp700I GAANNNNTTC 1 cut(s) 409
Asp718I GGTACC 2 cut(s) 989, 1169
AspS9I GGNCC 4 cut(s) 131, 500, 512, 887
AsuC2I CCSGG 1 cut(s) 1174
AsuHPI GGTGA 3 cut(s) 335, 1115, 1294
AvaII GGWCC 4 cut(s) 131, 500, 512, 887
BanI GGYRCC 2 cut(s) 989, 1169
BbsI GAAGAC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 925
BbvI GCAGC 3 cut(s) 659, 953, 1042
BccI CCATC 2 cut(s) 1084, 1273
BceAI ACGGC 1 cut(s) 793
BcgI CGANNNNNNTGC 2 cut(s) 1109, 1143
BciT130I CCWGG 3 cut(s) 194, 510, 737
BciVI GTATCC 1 cut(s) 646
BcnI CCSGG 1 cut(s) 1174
BcoDI GTCTC 1 cut(s) 1175
BfmI CTRYAG 1 cut(s) 414
BfuI GTATCC 1 cut(s) 646
BisI GCNGC 4 cut(s) 258, 673, 942, 1056
BlpI GCTNAGC 1 cut(s) 769
BlsI GCNGC 4 cut(s) 259, 674, 943, 1057
Bme1390I CCNGG 4 cut(s) 194, 510, 737, 1174
Bme18I GGWCC 4 cut(s) 131, 500, 512, 887
BmgT120I GGNCC 4 cut(s) 131, 500, 512, 887
BmiI GGNNCC 5 cut(s) 41, 888, 991, 1139, 1171
BmrFI CCNGG 4 cut(s) 194, 510, 737, 1174
BmsI GCATC 2 cut(s) 1117, 1233
BoxI GACNNNNGTC 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 274
BplI GAGNNNNNCTC 2 cut(s) 832, 864
BpmI CTGGAG 3 cut(s) 516, 939, 1106
Bpu1102I GCTNAGC 1 cut(s) 769
BpuEI CTTGAG 2 cut(s) 639, 834
BpuMI CCSGG 1 cut(s) 1174
BsaBI GATNNNNATC 1 cut(s) 1247
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 4 cut(s) 127, 736, 882, 932
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 4 cut(s) 509, 884, 986, 1148
Bse1I ACTGG 3 cut(s) 900, 922, 980
Bse3DI GCAATG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 1247
BseBI CCWGG 3 cut(s) 194, 510, 737
BseDI CCNNGG 4 cut(s) 127, 736, 882, 932
BseGI GGATG 3 cut(s) 147, 804, 1284
BseJI GATNNNNATC 1 cut(s) 1247
BseLI CCNNNNNNNGG 4 cut(s) 509, 884, 986, 1148
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 783, 1230
BseNI ACTGG 3 cut(s) 900, 922, 980
BseRI GAGGAG 2 cut(s) 20, 688
BseXI GCAGC 3 cut(s) 659, 953, 1042
BseYI CCCAGC 1 cut(s) 152
BshFI GGCC 2 cut(s) 197, 899
BshNI GGYRCC 2 cut(s) 989, 1169
BsiHKAI GWGCWC 1 cut(s) 925
BsiSI CCGG 1 cut(s) 1174
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 4 cut(s) 509, 884, 986, 1148
BsmAI GTCTC 1 cut(s) 1175
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 2 cut(s) 197, 899
Bsp1286I GDGCHC 1 cut(s) 925
Bsp143I GATC 1 cut(s) 20
Bsp1720I GCTNAGC 1 cut(s) 769
BspACI CCGC 3 cut(s) 244, 258, 268
BspANI GGCC 2 cut(s) 197, 899
BspCNI CTCAG 2 cut(s) 782, 1231
BspLI GGNNCC 5 cut(s) 41, 888, 991, 1139, 1171
BspT107I GGYRCC 2 cut(s) 989, 1169
BsrBI CCGCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 337
BsrI ACTGG 3 cut(s) 900, 922, 980
BssECI CCNNGG 4 cut(s) 127, 736, 882, 932
BssMI GATC 1 cut(s) 20
BssNAI GTATAC 1 cut(s) 915
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 3 cut(s) 127, 882, 932
Bst1107I GTATAC 1 cut(s) 915
Bst2UI CCWGG 3 cut(s) 194, 510, 737
Bst4CI ACNGT 4 cut(s) 106, 398, 727, 1306
Bst6I CTCTTC 2 cut(s) 473, 706
BstACI GRCGYC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 113, 262
BstDEI CTNAG 4 cut(s) 450, 769, 962, 1239
BstF5I GGATG 3 cut(s) 147, 804, 1284
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 1175
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 5 cut(s) 108, 276, 285, 446, 1061
BstNI CCWGG 3 cut(s) 194, 510, 737
BstPAI GACNNNNGTC 1 cut(s) 129
BstSCI CCNGG 4 cut(s) 192, 508, 735, 1172
BstSFI CTRYAG 1 cut(s) 414
BstV1I GCAGC 3 cut(s) 659, 953, 1042
BstV2I GAAGAC 1 cut(s) 274
BstZ17I GTATAC 1 cut(s) 915
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 2 cut(s) 197, 899
BtsCI GGATG 3 cut(s) 147, 804, 1284
BtsIMutI CAGTG 1 cut(s) 907
Cac8I GCNNGC 2 cut(s) 113, 262
CaiI CAGNNNCTG 1 cut(s) 986
Cfr13I GGNCC 4 cut(s) 131, 500, 512, 887
CseI GACGC 1 cut(s) 268
Csp6I GTAC 3 cut(s) 145, 990, 1170
CspCI CAANNNNNGTGG 4 cut(s) 1029, 1064, 1132, 1167
CviAII CATG 2 cut(s) 36, 1291
CviQI GTAC 3 cut(s) 145, 990, 1170
DdeI CTNAG 4 cut(s) 450, 769, 962, 1239
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eam1104I CTCTTC 2 cut(s) 473, 706
EarI CTCTTC 2 cut(s) 473, 706
EciI GGCGGA 1 cut(s) 233
Eco130I CCWWGG 3 cut(s) 127, 882, 932
Eco32I GATATC 2 cut(s) 432, 526
Eco47I GGWCC 4 cut(s) 131, 500, 512, 887
Eco57I CTGAAG 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 512
EcoRII CCWGG 3 cut(s) 192, 508, 735
EcoRV GATATC 2 cut(s) 432, 526
EcoT14I CCWWGG 3 cut(s) 127, 882, 932
ErhI CCWWGG 3 cut(s) 127, 882, 932
FaeI CATG 2 cut(s) 39, 1294
FalI AAGNNNNNCTT 4 cut(s) 74, 106, 429, 461
FaqI GGGAC 1 cut(s) 151
FatI CATG 2 cut(s) 35, 1290
FblI GTMKAC 1 cut(s) 914
Fnu4HI GCNGC 4 cut(s) 258, 673, 942, 1056
FokI GGATG 3 cut(s) 134, 811, 1291
Fsp4HI GCNGC 4 cut(s) 258, 673, 942, 1056
GluI GCNGC 4 cut(s) 258, 673, 942, 1056
GsaI CCCAGC 1 cut(s) 156
GsuI CTGGAG 3 cut(s) 516, 939, 1106
HaeIII GGCC 2 cut(s) 197, 899
HapII CCGG 1 cut(s) 1174
HgaI GACGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 2 cut(s) 39, 1294
HinfI GANTC 4 cut(s) 118, 410, 628, 862
HpaII CCGG 1 cut(s) 1174
HphI GGTGA 3 cut(s) 335, 1115, 1294
Hpy166II GTNNAC 1 cut(s) 915
Hpy188I TCNGA 7 cut(s) 135, 208, 366, 436, 861, 891, 1240
Hpy188III TCNNGA 6 cut(s) 122, 427, 495, 645, 1114, 1252
Hpy8I GTNNAC 1 cut(s) 915
Hpy99I CGWCG 2 cut(s) 212, 215
HpyAV CCTTC 6 cut(s) 4, 247, 328, 525, 888, 1004
HpyCH4III ACNGT 4 cut(s) 106, 398, 727, 1306
HpyCH4IV ACGT 2 cut(s) 210, 1266
HpyCH4V TGCA 7 cut(s) 102, 111, 335, 468, 662, 682, 941
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 276, 285, 446, 1061
HpyF3I CTNAG 4 cut(s) 450, 769, 962, 1239
HpySE526I ACGT 2 cut(s) 210, 1266
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 2 cut(s) 39, 1294
KpnI GGTACC 2 cut(s) 993, 1173
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 5 cut(s) 320, 920, 1052, 1081, 1143
Lsp1109I GCAGC 3 cut(s) 659, 953, 1042
LweI GCATC 2 cut(s) 1117, 1233
MaeII ACGT 2 cut(s) 210, 1266
MaeIII GTNAC 1 cut(s) 688
MalI GATC 1 cut(s) 22
MbiI CCGCTC 1 cut(s) 260
MboI GATC 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 925
MmeI TCCRAC 3 cut(s) 81, 231, 1182
MroXI GAANNNNTTC 1 cut(s) 409
MseI TTAA 5 cut(s) 339, 722, 1034, 1212, 1221
MslI CAYNNNNRTG 2 cut(s) 68, 621
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 1 cut(s) 1174
MspR9I CCNGG 4 cut(s) 194, 510, 737, 1174
MvaI CCWGG 3 cut(s) 194, 510, 737
MwoI GCNNNNNNNGC 5 cut(s) 108, 276, 285, 446, 1061
NciI CCSGG 1 cut(s) 1174
NdeII GATC 1 cut(s) 20
NlaIII CATG 2 cut(s) 39, 1294
NlaIV GGNNCC 5 cut(s) 41, 888, 991, 1139, 1171
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 409
PfeI GAWTC 4 cut(s) 118, 410, 628, 862
PflMI CCANNNNNTGG 1 cut(s) 986
PkrI GCNGC 4 cut(s) 259, 674, 943, 1057
PpuMI RGGWCCY 1 cut(s) 512
PshAI GACNNNNGTC 1 cut(s) 129
PshBI ATTAAT 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 512
Psp6I CCWGG 3 cut(s) 192, 508, 735
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 3 cut(s) 192, 508, 735
PspN4I GGNNCC 5 cut(s) 41, 888, 991, 1139, 1171
PspPI GGNCC 4 cut(s) 131, 500, 512, 887
PspPPI RGGWCCY 1 cut(s) 512
PsrI GAACNNNNNNTAC 2 cut(s) 724, 756
PstNI CAGNNNCTG 1 cut(s) 986
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 3 cut(s) 146, 991, 1171
RsaNI GTAC 3 cut(s) 145, 990, 1170
RseI CAYNNNNRTG 2 cut(s) 68, 621
SaqAI TTAA 5 cut(s) 339, 722, 1034, 1212, 1221
SatI GCNGC 4 cut(s) 258, 673, 942, 1056
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 4 cut(s) 131, 500, 512, 887
ScrFI CCNGG 4 cut(s) 194, 510, 737, 1174
SduI GDGCHC 1 cut(s) 925
SfaNI GCATC 2 cut(s) 1117, 1233
SfcI CTRYAG 1 cut(s) 414
SinI GGWCC 4 cut(s) 131, 500, 512, 887
SmiMI CAYNNNNRTG 2 cut(s) 68, 621
SmlI CTYRAG 2 cut(s) 654, 849
SmoI CTYRAG 2 cut(s) 654, 849
SsiI CCGC 3 cut(s) 244, 258, 268
StyD4I CCNGG 4 cut(s) 192, 508, 735, 1172
StyI CCWWGG 3 cut(s) 127, 882, 932
TaaI ACNGT 4 cut(s) 106, 398, 727, 1306
TaiI ACGT 2 cut(s) 213, 1269
TaqI TCGA 3 cut(s) 93, 249, 294
TatI WGTACW 1 cut(s) 144
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 4 cut(s) 118, 410, 628, 862
Tru1I TTAA 5 cut(s) 339, 722, 1034, 1212, 1221
Tru9I TTAA 5 cut(s) 339, 722, 1034, 1212, 1221
TscAI CASTG 1 cut(s) 907
TseI GCWGC 3 cut(s) 672, 941, 1055
TspDTI ATGAA 4 cut(s) 86, 807, 815, 963
TspGWI ACGGA 2 cut(s) 834, 993
TspRI CASTG 1 cut(s) 907
Van91I CCANNNNNTGG 1 cut(s) 986
VpaK11BI GGWCC 4 cut(s) 131, 500, 512, 887
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 6 cut(s) 370, 422, 549, 709, 873, 1193
XmiI GTMKAC 1 cut(s) 914
XmnI GAANNNNTTC 1 cut(s) 409
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.