Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007112

Physical Location & Seq

Genomic Coordinates Reverse (-)

9283167 .. 9285092

Gene Structure 1926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16977

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCTTATGTTAAGTTTTGCTATCTGCTGTGTGCTTACTTTTGTGACCTCAGTTAGTAGCCAGGGTTCTCTTATTTCTAATGGTAATAAAGGCTCAGCTGACGGCAATTTCAATACTGAAAGGATGAACAAGGTGTATCAGCACGGAAGAATGACAATAGGACAGAGCAGTTCTCAAGGTGTTCAGAATCTCACTCAAATTCCTTCCAAGGGTCCGAAAGAGGCCGGTGGAAATGTTTATACTGGAGCACTTCCTCCTTGGTTTGCAGCAGATGAAGAAAATCAGCTTAGTATTCCAATACAACCAGTTTCTGGTACCCTTCTTCCTCCGTCAAGTAAGTCAGGGAAGTCCAAGAAATTAAACCCAAAACGAGTGGGAGCAGCTTGGGCAGAAAGGAGAAAGAGGGAGCTGGAGATGGAACAAAGGGGTGAGATTGTCAAGAGCGATTATGATGCTAATTGGCTCCCCAATTTTGGTGGAGTTTGGCAATCTGGTACCCGGAAAGAGACTAAAAAAGAATTTGAGTTGGAGAAACTTAATTCAGTTAAGGTTGAAAGTCAATCTGAGATGCCAATCAAGATACAGCCTTACGTCAGCAAAAGGATGCGAACTGGTGCAAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCDC84

Protein Analysis

208

Amino Acids

22.89

Weight (kDa)

9.52

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC84	PF14968	43 - 178	1.7e-35	Coiled coil protein 84

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24900 AT4G24900
fragaria_vesca	FvH4_5g08360 FvH4_5g08360 FvH4_5g08360 FvH4_5g08360 FvH4_5g08360
malus_domestica	MD06G1141400.v1.1 MD14G1156600.v1.1
prunus_persica	Prupe.5G150700_v2.0.a1
pyrus_communis	pycom06g13140 pycom14g13020
rosa_chinensis	RchiOBHm_Chr7g0190081 RchiOBHm_Chr7g0190091
rosa_laevigata	RLG00000004566
rosa_multiflora	Rmu_co8003618.1_g000001 Rmu_sc0000744.1_g000156 Rmu_sc0004886.1_g000009
rosa_roxburghii	Rroxscaffold_3G00264900
rosa_rugosa	Rorug06G0502100
rosa_samantha	Rh7AG107700 Rh7BG110000 Rh7CG112400 Rh7DG110800
rosa_wichuraiana	Rw7G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	314, 494
AccB1I	GGYRCC	2 cut(s)	314, 494
AccB7I	CCANNNNNTGG	1 cut(s)	311
AcsI	RAATTY	2 cut(s)	198, 518
AfaI	GTAC	2 cut(s)	316, 496
AfiI	CCNNNNNNNGG	3 cut(s)	209, 311, 473
AgsI	TTSAA	2 cut(s)	112, 554
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	4 cut(s)	98, 286, 383, 409
AluI	AGCT	4 cut(s)	98, 286, 383, 409
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	500
AlwNI	CAGNNNCTG	1 cut(s)	311
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	266, 380
ApoI	RAATTY	2 cut(s)	198, 518
Asp718I	GGTACC	2 cut(s)	314, 494
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	499
AsuHPI	GGTGA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	212
BanI	GGYRCC	2 cut(s)	314, 494
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	278, 392
BccI	CCATC	1 cut(s)	409
BceAI	ACGGC	1 cut(s)	118
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	1 cut(s)	62
BcnI	CCSGG	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	500
BisI	GCNGC	2 cut(s)	267, 381
BlpI	GCTNAGC	1 cut(s)	94
BlsI	GCNGC	2 cut(s)	268, 382
Bme1390I	CCNGG	2 cut(s)	62, 499
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	4 cut(s)	213, 316, 464, 496
BmrFI	CCNGG	2 cut(s)	62, 499
BmsI	GCATC	3 cut(s)	442, 558, 594
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
BpmI	CTGGAG	2 cut(s)	264, 431
Bpu1102I	GCTNAGC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	499
BsaBI	GATNNNNATC	1 cut(s)	572
BsaJI	CCNNGG	3 cut(s)	61, 207, 257
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 311, 473
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	3 cut(s)	247, 305, 616
Bse8I	GATNNNNATC	1 cut(s)	572
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	61, 207, 257
BseGI	GGATG	2 cut(s)	129, 609
BseJI	GATNNNNATC	1 cut(s)	572
BseLI	CCNNNNNNNGG	3 cut(s)	209, 311, 473
BseMII	CTCAG	3 cut(s)	63, 108, 555
BseNI	ACTGG	3 cut(s)	247, 305, 616
BseXI	GCAGC	2 cut(s)	278, 392
BshFI	GGCC	1 cut(s)	224
BshNI	GGYRCC	2 cut(s)	314, 494
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	2 cut(s)	225, 499
BslI	CCNNNNNNNGG	3 cut(s)	209, 311, 473
BsmAI	GTCTC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp1720I	GCTNAGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	3 cut(s)	62, 107, 556
BspLI	GGNNCC	4 cut(s)	213, 316, 464, 496
BspT107I	GGYRCC	2 cut(s)	314, 494
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	3 cut(s)	247, 305, 616
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	3 cut(s)	61, 207, 257
BssT1I	CCWWGG	2 cut(s)	207, 257
Bst2UI	CCWGG	1 cut(s)	62
BstDEI	CTNAG	4 cut(s)	49, 94, 287, 564
BstF5I	GGATG	2 cut(s)	129, 609
BstMAI	GTCTC	1 cut(s)	500
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	60, 497
BstV1I	GCAGC	2 cut(s)	278, 392
BsuRI	GGCC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	129, 609
CaiI	CAGNNNCTG	1 cut(s)	311
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	315, 495
CspCI	CAANNNNNGTGG	4 cut(s)	354, 389, 457, 492
CviJI	RGCY	9 cut(s)	60, 93, 98, 224, 286, 383, 409, 463, 586
CviKI_1	RGCY	9 cut(s)	60, 93, 98, 224, 286, 383, 409, 463, 586
CviQI	GTAC	2 cut(s)	315, 495
DdeI	CTNAG	4 cut(s)	49, 94, 287, 564
Eco130I	CCWWGG	2 cut(s)	207, 257
Eco47I	GGWCC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	2 cut(s)	207, 257
ErhI	CCWWGG	2 cut(s)	207, 257
FaiI	YATR	3 cut(s)	8, 240, 450
Fnu4HI	GCNGC	2 cut(s)	267, 381
FokI	GGATG	2 cut(s)	136, 616
Fsp4HI	GCNGC	2 cut(s)	267, 381
GluI	GCNGC	2 cut(s)	267, 381
GsuI	CTGGAG	2 cut(s)	264, 431
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	2 cut(s)	225, 499
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	2 cut(s)	225, 499
HphI	GGTGA	1 cut(s)	440
Hpy188I	TCNGA	3 cut(s)	186, 216, 565
Hpy188III	TCNNGA	2 cut(s)	439, 577
HpyAV	CCTTC	2 cut(s)	213, 329
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	2 cut(s)	266, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	4 cut(s)	49, 94, 287, 564
HpySE526I	ACGT	1 cut(s)	591
KpnI	GGTACC	2 cut(s)	318, 498
LmnI	GCTCC	4 cut(s)	245, 377, 406, 468
Lsp1109I	GCAGC	2 cut(s)	278, 392
LweI	GCATC	3 cut(s)	442, 558, 594
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	1 cut(s)	43
MboII	GAAGA	3 cut(s)	159, 287, 314
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	7 cut(s)	106, 198, 356, 457, 469, 518, 538
MmeI	TCCRAC	1 cut(s)	507
MnlI	CCTC	5 cut(s)	58, 214, 264, 336, 396
MseI	TTAA	4 cut(s)	11, 359, 537, 546
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	225, 499
MspR9I	CCNGG	2 cut(s)	62, 499
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	499
NlaIV	GGNNCC	4 cut(s)	213, 316, 464, 496
NmuCI	GTSAC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	187
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	268, 382
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	4 cut(s)	213, 316, 464, 496
PspPI	GGNCC	1 cut(s)	212
PsrI	GAACNNNNNNTAC	2 cut(s)	49, 81
PstNI	CAGNNNCTG	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	316, 496
RsaNI	GTAC	2 cut(s)	315, 495
SaqAI	TTAA	4 cut(s)	11, 359, 537, 546
SatI	GCNGC	2 cut(s)	267, 381
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	62, 499
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	9 cut(s)	50, 100, 135, 181, 288, 385, 411, 552, 594
SfaNI	GCATC	3 cut(s)	442, 558, 594
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	7 cut(s)	106, 198, 356, 457, 469, 518, 538
StyD4I	CCNGG	2 cut(s)	60, 497
StyI	CCWWGG	2 cut(s)	207, 257
TaiI	ACGT	1 cut(s)	594
TasI	AATT	7 cut(s)	106, 198, 356, 457, 469, 518, 538
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	4 cut(s)	11, 359, 537, 546
Tru9I	TTAA	4 cut(s)	11, 359, 537, 546
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	266, 380
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	140, 288
TspGWI	ACGGA	2 cut(s)	159, 318
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	2 cut(s)	198, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.