Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0007112

Physical Location & Seq

Genomic Coordinates Forward (+)

580324 .. 580824

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000744.1_g000156.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggaggagaaggagaaacgatcaaaggctcattcgtggaaccctaaccctaaatccaacgccacagcaatgaagaagaagcacgacttcgagtattgcacggtttgcaagctgaatcacgaccaaggtccgagccacaagtacatccccagccacaccaagtccctctctactttcctctctcgcttccaggccaagctctccgacgtcgttttcttcctcaaaaaccctaccttcctccgcctcgaacacgccgctcgcaaccgcctctggtgcgtcttctgcgatttcgacattgacgagagagatagctccttcgcttgtggcaatgcaattaatcaccttgcgagtgccgaacatctgaagaatttgaagcacttcttgtggaaatacggtggaggaatggattctgtcgataaattcaattccttccaagggtccgaaagaggccagtggaaatgtgtatactggagcacttcctccttggtttgcagcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCDC84

Protein Analysis

166

Amino Acids

19.23

Weight (kDa)

9.18

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24900 AT4G24900
fragaria_vesca	FvH4_5g08360 FvH4_5g08360 FvH4_5g08360 FvH4_5g08360 FvH4_5g08360
malus_domestica	MD06G1141400.v1.1 MD14G1156600.v1.1
prunus_persica	Prupe.5G150700_v2.0.a1
pyrus_communis	pycom06g13140 pycom14g13020
rosa_chinensis	RchiOBHm_Chr7g0190081 RchiOBHm_Chr7g0190091
rosa_laevigata	RLG00000004566
rosa_multiflora	Rmu_co8003618.1_g000001 Rmu_sc0000744.1_g000156 Rmu_sc0004886.1_g000009
rosa_roxburghii	Rroxscaffold_3G00264900
rosa_rugosa	Rorug06G0502100
rosa_samantha	Rh7AG107700 Rh7BG110000 Rh7CG112400 Rh7DG110800
rosa_wichuraiana	Rw7G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccBSI	CCGCTC	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	465
AciI	CCGC	3 cut(s)	241, 255, 265
AcsI	RAATTY	2 cut(s)	367, 419
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	373, 424
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	112, 199, 312
AluI	AGCT	3 cut(s)	112, 199, 312
Alw21I	GWGCWC	1 cut(s)	476
AoxI	GGCC	2 cut(s)	192, 448
ApeKI	GCWGC	1 cut(s)	492
ApoI	RAATTY	2 cut(s)	367, 419
AseI	ATTAAT	1 cut(s)	336
Asp700I	GAANNNNTTC	2 cut(s)	377, 406
AspS9I	GGNCC	2 cut(s)	128, 438
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	128, 438
BbsI	GAAGAC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	476
BciT130I	CCWGG	1 cut(s)	191
BisI	GCNGC	2 cut(s)	255, 493
BlsI	GCNGC	2 cut(s)	256, 494
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	2 cut(s)	128, 438
BmgT120I	GGNCC	2 cut(s)	128, 438
BmiI	GGNNCC	2 cut(s)	41, 439
BmrFI	CCNGG	1 cut(s)	191
BoxI	GACNNNNGTC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	490
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	124, 433, 483
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	2 cut(s)	451, 473
Bse3DI	GCAATG	2 cut(s)	75, 334
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	3 cut(s)	124, 433, 483
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMI	GCAATG	2 cut(s)	75, 334
BseNI	ACTGG	2 cut(s)	451, 473
BseRI	GAGGAG	1 cut(s)	20
BseYI	CCCAGC	1 cut(s)	149
BshFI	GGCC	2 cut(s)	194, 450
BsiHKAI	GWGCWC	1 cut(s)	476
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	194, 450
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	3 cut(s)	241, 255, 265
BspANI	GGCC	2 cut(s)	194, 450
BspLI	GGNNCC	2 cut(s)	41, 439
BsrBI	CCGCTC	1 cut(s)	257
BsrDI	GCAATG	2 cut(s)	75, 334
BsrI	ACTGG	2 cut(s)	451, 473
BssECI	CCNNGG	3 cut(s)	124, 433, 483
BssMI	GATC	1 cut(s)	20
BssNAI	GTATAC	1 cut(s)	466
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	3 cut(s)	124, 433, 483
Bst1107I	GTATAC	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	103, 395
BstACI	GRCGYC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	110, 259
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	20
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 273, 282
BstNI	CCWGG	1 cut(s)	191
BstPAI	GACNNNNGTC	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	271
BstZ17I	GTATAC	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	194, 450
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	458
Cac8I	GCNNGC	2 cut(s)	110, 259
Cfr13I	GGNCC	2 cut(s)	128, 438
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	142
CviJI	RGCY	8 cut(s)	29, 112, 135, 153, 194, 199, 312, 450
CviKI_1	RGCY	8 cut(s)	29, 112, 135, 153, 194, 199, 312, 450
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	230
Eco130I	CCWWGG	3 cut(s)	124, 433, 483
Eco47I	GGWCC	2 cut(s)	128, 438
Eco57I	CTGAAG	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	3 cut(s)	124, 433, 483
ErhI	CCWWGG	3 cut(s)	124, 433, 483
FaiI	YATR	1 cut(s)	466
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 365, 397
FaqI	GGGAC	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	2 cut(s)	255, 493
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	255, 493
GluI	GCNGC	2 cut(s)	255, 493
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	490
HaeIII	GGCC	2 cut(s)	194, 450
HgaI	GACGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	207
HinfI	GANTC	2 cut(s)	115, 407
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	4 cut(s)	132, 205, 363, 442
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	2 cut(s)	209, 212
HpyAV	CCTTC	4 cut(s)	4, 244, 325, 439
HpyCH4III	ACNGT	2 cut(s)	103, 395
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	4 cut(s)	99, 108, 332, 492
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 273, 282
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	317, 471
LpnPI	CCDG	6 cut(s)	163, 176, 203, 256, 454, 464
MaeII	ACGT	1 cut(s)	207
MalI	GATC	1 cut(s)	22
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	1 cut(s)	20
MboII	GAAGA	5 cut(s)	85, 88, 208, 271, 376
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	4 cut(s)	333, 367, 419, 424
MmeI	TCCRAC	2 cut(s)	81, 228
MnlI	CCTC	9 cut(s)	176, 188, 230, 248, 254, 278, 392, 440, 490
MroXI	GAANNNNTTC	2 cut(s)	377, 406
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	105, 273, 282
NdeII	GATC	1 cut(s)	20
NlaIV	GGNNCC	2 cut(s)	41, 439
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdmI	GAANNNNTTC	2 cut(s)	377, 406
PfeI	GAWTC	2 cut(s)	115, 407
PkrI	GCNGC	2 cut(s)	256, 494
PshAI	GACNNNNGTC	1 cut(s)	126
PshBI	ATTAAT	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	41, 439
PspPI	GGNCC	2 cut(s)	128, 438
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	255, 493
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	2 cut(s)	128, 438
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	476
SetI	ASST	7 cut(s)	114, 130, 201, 210, 236, 314, 345
SinI	GGWCC	2 cut(s)	128, 438
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	4 cut(s)	333, 367, 419, 424
SsiI	CCGC	3 cut(s)	241, 255, 265
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	3 cut(s)	124, 433, 483
TaaI	ACNGT	2 cut(s)	103, 395
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	4 cut(s)	90, 246, 291, 414
TasI	AATT	4 cut(s)	333, 367, 419, 424
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	115, 407
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	458
TseI	GCWGC	1 cut(s)	492
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	458
VpaK11BI	GGWCC	2 cut(s)	128, 438
VspI	ATTAAT	1 cut(s)	336
XapI	RAATTY	2 cut(s)	367, 419
XmiI	GTMKAC	1 cut(s)	465
XmnI	GAANNNNTTC	2 cut(s)	377, 406
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.