Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004886.1

Orthogroup ID

OG0007112

Physical Location & Seq

Genomic Coordinates Reverse (-)

40633 .. 44185

Gene Structure 3553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004886.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

atgaacaaccaattcatgcctcattcggcagcaaaaccacatgacatcgccgaggccaaggccagtctagctgtcagggttgccactggacgagaggttagcactggggtctctcacaacaatttacagcaagaagtagtccctacggtaatggaggagaaggagaaacgatcaaaggctcattcgtggaatcctaaccctaaccctaaatccaacgccacaacaatgaagaagaagcacgacttcgagtattgcacggtttgcaagctgaatcacgaccaaggtccgagccacaagtacatccccagccacaccaagtccctctctactttcctctctcgcttccaggccaagctctccgacgtcgttttcttcctcaaaaaccctaccttcctccgcctcgaacacgccgctcgcaaccgcctctggtgcgtcttctgcgatttcgacattgacgagcgggatagctccttcgcttgtggcaatgcaattaatcaccttgcgagtgccgaacatctgaagaatttgaagcacttcttgtggaaatacggtggaggaatggattctgtcgataaattcaggatattggaagctgaccttgctaagtgggagaagaagtgcaagtcattgaagagtgaagctatttctggaggaccaatgccaggaccttcaaatgatatccataataaacttgaatatggaattttagatacttttgaaaataatagtagttcaagtttttcaaatggtgttatgcctttactatatcatacaaatgagaatcaggtatcccattctggactttctcaagttgcaaatgttggctgctttgtgcaagatgttactgcgtcctcttctattaattccaaaggtttaacagttagtagccagggttctcttatttctaatggtaataaaggctcagctgacggcaatttcaatactgaaaggatgaacaaggtgtatcagcatggaagaatgacaataggacagagcagttctcaaggtgttcagaatctcactcaaattccttccaagggtccgaaagaggccagtggaaatgtgtatactggagcacttcctccttggtttgcagcagatgaagaaaatcagcttagtattccaatacaaccagtttctggtacccttcttcctccgtcaagtaagtcagggaagtccaagaaattaaacccaaaacgagtgggagcagcttgggcagaaaggagaaagagggagctggagatggaacaaaggggtgagattgtcaagagcgattatgatgctaattggctccccaattttggtggagtttggcaatctggtacccggaaagagactaaaaaagaatttgagttggagaaacttaatttagttaaggttgaaagtcaatctgagatgccaatcaagatacagccttacgtcagcaaaaggatggtgagttccatgttcccacttactgtgtctgtttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCDC84

Protein Analysis

490

Amino Acids

54.34

Weight (kDa)

9.14

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24900 AT4G24900
fragaria_vesca	FvH4_5g08360 FvH4_5g08360 FvH4_5g08360 FvH4_5g08360 FvH4_5g08360
malus_domestica	MD06G1141400.v1.1 MD14G1156600.v1.1
prunus_persica	Prupe.5G150700_v2.0.a1
pyrus_communis	pycom06g13140 pycom14g13020
rosa_chinensis	RchiOBHm_Chr7g0190081 RchiOBHm_Chr7g0190091
rosa_laevigata	RLG00000004566
rosa_multiflora	Rmu_co8003618.1_g000001 Rmu_sc0000744.1_g000156 Rmu_sc0004886.1_g000009
rosa_roxburghii	Rroxscaffold_3G00264900
rosa_rugosa	Rorug06G0502100
rosa_samantha	Rh7AG107700 Rh7BG110000 Rh7CG112400 Rh7DG110800
rosa_wichuraiana	Rw7G009310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	366
Acc65I	GGTACC	2 cut(s)	1142, 1322
AccB1I	GGYRCC	2 cut(s)	1142, 1322
AccB7I	CCANNNNNTGG	1 cut(s)	1139
AccBSI	CCGCTC	2 cut(s)	413, 460
AccI	GTMKAC	1 cut(s)	1067
AciI	CCGC	4 cut(s)	397, 411, 421, 460
AcsI	RAATTY	5 cut(s)	523, 575, 702, 1026, 1346
AcuI	CTGAAG	1 cut(s)	539
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	3 cut(s)	299, 1144, 1324
AfiI	CCNNNNNNNGG	4 cut(s)	662, 1037, 1139, 1301
AgsI	TTSAA	9 cut(s)	529, 631, 672, 695, 719, 735, 744, 940, 1382
AjnI	CCWGG	3 cut(s)	345, 661, 888
AloI	GAACNNNNNNTCC	2 cut(s)	1423, 1455
Alw21I	GWGCWC	1 cut(s)	1078
Alw26I	GTCTC	2 cut(s)	115, 1328
AlwNI	CAGNNNCTG	1 cut(s)	1139
AoxI	GGCC	4 cut(s)	54, 60, 348, 1050
ApeKI	GCWGC	4 cut(s)	29, 825, 1094, 1208
ApoI	RAATTY	5 cut(s)	523, 575, 702, 1026, 1346
AseI	ATTAAT	2 cut(s)	492, 861
Asp700I	GAANNNNTTC	2 cut(s)	533, 562
Asp718I	GGTACC	2 cut(s)	1142, 1322
AspS9I	GGNCC	4 cut(s)	284, 653, 665, 1040
AsuC2I	CCSGG	1 cut(s)	1327
AsuHPI	GGTGA	3 cut(s)	488, 1268, 1447
AvaII	GGWCC	4 cut(s)	284, 653, 665, 1040
BanI	GGYRCC	2 cut(s)	1142, 1322
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	1078
BbvI	GCAGC	4 cut(s)	41, 812, 1106, 1220
BccI	CCATC	2 cut(s)	1237, 1426
BceAI	ACGGC	1 cut(s)	946
BcgI	CGANNNNNNTGC	2 cut(s)	1262, 1296
BciT130I	CCWGG	3 cut(s)	347, 663, 890
BciVI	GTATCC	1 cut(s)	799
BcnI	CCSGG	1 cut(s)	1327
BcoDI	GTCTC	2 cut(s)	115, 1328
BfaI	CTAG	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	799
BisI	GCNGC	5 cut(s)	30, 411, 826, 1095, 1209
BlpI	GCTNAGC	1 cut(s)	922
BlsI	GCNGC	5 cut(s)	31, 412, 827, 1096, 1210
Bme1390I	CCNGG	4 cut(s)	347, 663, 890, 1327
Bme18I	GGWCC	4 cut(s)	284, 653, 665, 1040
BmgT120I	GGNCC	4 cut(s)	284, 653, 665, 1040
BmiI	GGNNCC	4 cut(s)	1041, 1144, 1292, 1324
BmrFI	CCNGG	4 cut(s)	347, 663, 890, 1327
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	1270, 1386
BmuI	ACTGGG	1 cut(s)	114
BoxI	GACNNNNGTC	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	427
BplI	GAGNNNNNCTC	2 cut(s)	985, 1017
BpmI	CTGGAG	3 cut(s)	669, 1092, 1259
Bpu1102I	GCTNAGC	1 cut(s)	922
BpuEI	CTTGAG	2 cut(s)	792, 987
BpuMI	CCSGG	1 cut(s)	1327
BsaBI	GATNNNNATC	1 cut(s)	1400
BsaHI	GRCGYC	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	6 cut(s)	51, 57, 280, 889, 1035, 1085
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	4 cut(s)	662, 1037, 1139, 1301
Bse1I	ACTGG	6 cut(s)	63, 91, 109, 1053, 1075, 1133
Bse3DI	GCAATG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	1400
BseBI	CCWGG	3 cut(s)	347, 663, 890
BseDI	CCNNGG	6 cut(s)	51, 57, 280, 889, 1035, 1085
BseGI	GGATG	3 cut(s)	300, 957, 1437
BseJI	GATNNNNATC	1 cut(s)	1400
BseLI	CCNNNNNNNGG	4 cut(s)	662, 1037, 1139, 1301
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	2 cut(s)	936, 1383
BseNI	ACTGG	6 cut(s)	63, 91, 109, 1053, 1075, 1133
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	4 cut(s)	41, 812, 1106, 1220
BseYI	CCCAGC	1 cut(s)	305
BshFI	GGCC	4 cut(s)	56, 62, 350, 1052
BshNI	GGYRCC	2 cut(s)	1142, 1322
BsiHKAI	GWGCWC	1 cut(s)	1078
BsiSI	CCGG	1 cut(s)	1327
BslFI	GGGAC	2 cut(s)	125, 304
BslI	CCNNNNNNNGG	4 cut(s)	662, 1037, 1139, 1301
BsmAI	GTCTC	2 cut(s)	115, 1328
BsmFI	GGGAC	2 cut(s)	125, 304
BsnI	GGCC	4 cut(s)	56, 62, 350, 1052
Bso31I	GGTCTC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	1078
Bsp143I	GATC	1 cut(s)	170
Bsp1720I	GCTNAGC	1 cut(s)	922
BspACI	CCGC	4 cut(s)	397, 411, 421, 460
BspANI	GGCC	4 cut(s)	56, 62, 350, 1052
BspCNI	CTCAG	2 cut(s)	935, 1384
BspLI	GGNNCC	4 cut(s)	1041, 1144, 1292, 1324
BspT107I	GGYRCC	2 cut(s)	1142, 1322
BspTNI	GGTCTC	1 cut(s)	115
BsrBI	CCGCTC	2 cut(s)	413, 460
BsrDI	GCAATG	1 cut(s)	490
BsrI	ACTGG	6 cut(s)	63, 91, 109, 1053, 1075, 1133
BssECI	CCNNGG	6 cut(s)	51, 57, 280, 889, 1035, 1085
BssMI	GATC	1 cut(s)	170
BssNAI	GTATAC	1 cut(s)	1068
BssNI	GRCGYC	1 cut(s)	363
BssT1I	CCWWGG	4 cut(s)	57, 280, 1035, 1085
Bst1107I	GTATAC	1 cut(s)	1068
Bst2UI	CCWGG	3 cut(s)	347, 663, 890
Bst4CI	ACNGT	5 cut(s)	148, 259, 551, 880, 1459
Bst6I	CTCTTC	2 cut(s)	626, 859
BstACI	GRCGYC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	266, 415
BstDEI	CTNAG	4 cut(s)	603, 922, 1115, 1392
BstF5I	GGATG	3 cut(s)	300, 957, 1437
BstKTI	GATC	1 cut(s)	173
BstMAI	GTCTC	2 cut(s)	115, 1328
BstMBI	GATC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 261, 429, 438, 599, 1214
BstNI	CCWGG	3 cut(s)	347, 663, 890
BstPAI	GACNNNNGTC	1 cut(s)	282
BstSCI	CCNGG	4 cut(s)	345, 661, 888, 1325
BstV1I	GCAGC	4 cut(s)	41, 812, 1106, 1220
BstV2I	GAAGAC	1 cut(s)	427
BstZ17I	GTATAC	1 cut(s)	1068
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	4 cut(s)	56, 62, 350, 1052
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	300, 957, 1437
BtsIMutI	CAGTG	3 cut(s)	84, 102, 1060
Cac8I	GCNNGC	2 cut(s)	266, 415
CaiI	CAGNNNCTG	1 cut(s)	1139
Cfr13I	GGNCC	4 cut(s)	284, 653, 665, 1040
CseI	GACGC	2 cut(s)	421, 837
Csp6I	GTAC	3 cut(s)	298, 1143, 1323
CspCI	CAANNNNNGTGG	4 cut(s)	1182, 1217, 1285, 1320
CviAII	CATG	4 cut(s)	16, 41, 971, 1444
CviQI	GTAC	3 cut(s)	298, 1143, 1323
DdeI	CTNAG	4 cut(s)	603, 922, 1115, 1392
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
Eam1104I	CTCTTC	2 cut(s)	626, 859
EarI	CTCTTC	2 cut(s)	626, 859
EciI	GGCGGA	1 cut(s)	386
Eco130I	CCWWGG	4 cut(s)	57, 280, 1035, 1085
Eco31I	GGTCTC	1 cut(s)	115
Eco32I	GATATC	1 cut(s)	679
Eco47I	GGWCC	4 cut(s)	284, 653, 665, 1040
Eco57I	CTGAAG	1 cut(s)	539
EcoO109I	RGGNCCY	1 cut(s)	665
EcoRII	CCWGG	3 cut(s)	345, 661, 888
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	4 cut(s)	57, 280, 1035, 1085
ErhI	CCWWGG	4 cut(s)	57, 280, 1035, 1085
FaeI	CATG	4 cut(s)	19, 44, 974, 1447
FalI	AAGNNNNNCTT	6 cut(s)	227, 259, 521, 553, 582, 614
FaqI	GGGAC	2 cut(s)	125, 304
FatI	CATG	4 cut(s)	15, 40, 970, 1443
FauI	CCCGC	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	1067
Fnu4HI	GCNGC	5 cut(s)	30, 411, 826, 1095, 1209
FokI	GGATG	3 cut(s)	287, 964, 1444
Fsp4HI	GCNGC	5 cut(s)	30, 411, 826, 1095, 1209
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	5 cut(s)	30, 411, 826, 1095, 1209
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	3 cut(s)	669, 1092, 1259
HaeIII	GGCC	4 cut(s)	56, 62, 350, 1052
HapII	CCGG	1 cut(s)	1327
HgaI	GACGC	2 cut(s)	421, 837
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	4 cut(s)	19, 44, 974, 1447
HinfI	GANTC	5 cut(s)	190, 271, 563, 781, 1015
HpaII	CCGG	1 cut(s)	1327
HphI	GGTGA	3 cut(s)	488, 1268, 1447
Hpy166II	GTNNAC	1 cut(s)	1068
Hpy188I	TCNGA	6 cut(s)	288, 361, 519, 1014, 1044, 1393
Hpy188III	TCNNGA	6 cut(s)	275, 580, 648, 798, 1267, 1405
Hpy8I	GTNNAC	1 cut(s)	1068
Hpy99I	CGWCG	2 cut(s)	365, 368
HpyAV	CCTTC	6 cut(s)	154, 400, 481, 678, 1041, 1157
HpyCH4III	ACNGT	5 cut(s)	148, 259, 551, 880, 1459
HpyCH4IV	ACGT	2 cut(s)	363, 1419
HpyCH4V	TGCA	7 cut(s)	255, 264, 488, 621, 815, 835, 1094
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 261, 429, 438, 599, 1214
HpyF3I	CTNAG	4 cut(s)	603, 922, 1115, 1392
HpySE526I	ACGT	2 cut(s)	363, 1419
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	4 cut(s)	19, 44, 974, 1447
KpnI	GGTACC	2 cut(s)	1146, 1326
Kzo9I	GATC	1 cut(s)	170
LmnI	GCTCC	5 cut(s)	473, 1073, 1205, 1234, 1296
Lsp1109I	GCAGC	4 cut(s)	41, 812, 1106, 1220
LweI	GCATC	2 cut(s)	1270, 1386
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	2 cut(s)	363, 1419
MaeIII	GTNAC	1 cut(s)	841
MalI	GATC	1 cut(s)	172
MbiI	CCGCTC	2 cut(s)	413, 460
MboI	GATC	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	1078
MmeI	TCCRAC	3 cut(s)	237, 384, 1335
MroXI	GAANNNNTTC	2 cut(s)	533, 562
MseI	TTAA	6 cut(s)	492, 861, 875, 1187, 1365, 1374
MslI	CAYNNNNRTG	2 cut(s)	224, 774
MspA1I	CMGCKG	1 cut(s)	926
MspI	CCGG	1 cut(s)	1327
MspR9I	CCNGG	4 cut(s)	347, 663, 890, 1327
MvaI	CCWGG	3 cut(s)	347, 663, 890
MwoI	GCNNNNNNNGC	6 cut(s)	68, 261, 429, 438, 599, 1214
NciI	CCSGG	1 cut(s)	1327
NdeII	GATC	1 cut(s)	170
NlaIII	CATG	4 cut(s)	19, 44, 974, 1447
NlaIV	GGNNCC	4 cut(s)	1041, 1144, 1292, 1324
NmeAIII	GCCGAG	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	453
PdmI	GAANNNNTTC	2 cut(s)	533, 562
PfeI	GAWTC	5 cut(s)	190, 271, 563, 781, 1015
PflMI	CCANNNNNTGG	1 cut(s)	1139
PkrI	GCNGC	5 cut(s)	31, 412, 827, 1096, 1210
PpuMI	RGGWCCY	1 cut(s)	665
PshAI	GACNNNNGTC	1 cut(s)	282
PshBI	ATTAAT	2 cut(s)	492, 861
Psp5II	RGGWCCY	1 cut(s)	665
Psp6I	CCWGG	3 cut(s)	345, 661, 888
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	3 cut(s)	345, 661, 888
PspN4I	GGNNCC	4 cut(s)	1041, 1144, 1292, 1324
PspPI	GGNCC	4 cut(s)	284, 653, 665, 1040
PspPPI	RGGWCCY	1 cut(s)	665
PsrI	GAACNNNNNNTAC	2 cut(s)	877, 909
PstNI	CAGNNNCTG	1 cut(s)	1139
PvuII	CAGCTG	1 cut(s)	926
RsaI	GTAC	3 cut(s)	299, 1144, 1324
RsaNI	GTAC	3 cut(s)	298, 1143, 1323
RseI	CAYNNNNRTG	2 cut(s)	224, 774
SaqAI	TTAA	6 cut(s)	492, 861, 875, 1187, 1365, 1374
SatI	GCNGC	5 cut(s)	30, 411, 826, 1095, 1209
Sau3AI	GATC	1 cut(s)	170
Sau96I	GGNCC	4 cut(s)	284, 653, 665, 1040
ScrFI	CCNGG	4 cut(s)	347, 663, 890, 1327
SduI	GDGCHC	1 cut(s)	1078
SfaNI	GCATC	2 cut(s)	1270, 1386
SinI	GGWCC	4 cut(s)	284, 653, 665, 1040
SmiMI	CAYNNNNRTG	2 cut(s)	224, 774
SmlI	CTYRAG	2 cut(s)	807, 1002
SmoI	CTYRAG	2 cut(s)	807, 1002
SsiI	CCGC	4 cut(s)	397, 411, 421, 460
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	4 cut(s)	345, 661, 888, 1325
StyI	CCWWGG	4 cut(s)	57, 280, 1035, 1085
TaaI	ACNGT	5 cut(s)	148, 259, 551, 880, 1459
TaiI	ACGT	2 cut(s)	366, 1422
TaqI	TCGA	4 cut(s)	246, 402, 447, 570
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	5 cut(s)	190, 271, 563, 781, 1015
Tru1I	TTAA	6 cut(s)	492, 861, 875, 1187, 1365, 1374
Tru9I	TTAA	6 cut(s)	492, 861, 875, 1187, 1365, 1374
TscAI	CASTG	3 cut(s)	91, 109, 1060
TseI	GCWGC	4 cut(s)	29, 825, 1094, 1208
TspDTI	ATGAA	5 cut(s)	4, 17, 242, 968, 1116
TspGWI	ACGGA	1 cut(s)	1146
TspRI	CASTG	3 cut(s)	91, 109, 1060
Van91I	CCANNNNNTGG	1 cut(s)	1139
VpaK11BI	GGWCC	4 cut(s)	284, 653, 665, 1040
VspI	ATTAAT	2 cut(s)	492, 861
XapI	RAATTY	5 cut(s)	523, 575, 702, 1026, 1346
XmiI	GTMKAC	1 cut(s)	1067
XmnI	GAANNNNTTC	2 cut(s)	533, 562
XspI	CTAG	1 cut(s)	68
ZraI	GACGTC	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.