Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006145

Physical Location & Seq

Genomic Coordinates Forward (+)

14655843 .. 14657765

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G171600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAAGCTCTGGAGAAATCAGAAGAAACCGTCTCAAACCATTCTCAAAAACTAGCAGGAACTGTCAACTGGGGCACAGCAACTGTGATCGGAGTGTTTGCAGGCCTGTTTTATGGTGGTAGCAAGGAGGCATCTGCTTCAGTTAGCAAGGATGCAGAAGTAATGTTGAAGCTTGGGAGCACACCAGACAAGCGTGAACAATATCGTATGATGAGAGATGCAATGGAGAAAAGGTTCATACGAGTCACTCGGGGCTCGATAGTTGGTGGAGTGCGTCTTGGATTGTTTACTGCTACGTTTTGTGGCATACAAAATCTGCTTGCTGAGAAAAGGGGCGTGCATGATGTTTTCAATGTTGTTGGAGCCGGTTCAGCCACTGCTGCCACATTTGGTCTAATAATGCCAGGATCATTGCCATGGCGAGCAAGAAATGTGATGCTTGGTGCCGTCCTAGGAGCAGCATTGGGTTTTCCATTTGGGTGGGCGCATTTGAAGCTGGTAGAGAAAGCAAATGAAGGGAACCTGTCTGCACATCCTGATTCAGATCAAAGAGAAGCAAGGAGTGGAGTTGGTGCAGCAATTGAGAGGCTTGAAGAAAATTTGAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

204

Amino Acids

21.71

Weight (kDa)

9.1

Isoelectric Point (pI)

22.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63000
fragaria_vesca	FvH4_5g05480
malus_domestica	MD06G1172200.v1.1 MD14G1178100.v1.1
prunus_persica	Prupe.5G171600_v2.0.a1
pyrus_communis	pycom06g15340 pycom14g14860
rosa_chinensis	RchiOBHm_Chr7g0193351
rosa_laevigata	RLG00000004277
rosa_multiflora	Rmu_sc0000596.1_g000077 Rmu_ssc0000092.1_g000008
rosa_roxburghii	Rroxscaffold_3G00262190 Rroxscaffold_7G00204750
rosa_rugosa	Rorug06G0003000 Rorug06G0003100 Rorug07G0009100
rosa_samantha	Rh6BG115600 Rh6BG116100 Rh6CG114700 Rh6DG103100 Rh6DG103500 Rh7AG134900 Rh7AG135300 Rh7BG135600 Rh7CG139000 Rh7DG137000
rosa_wichuraiana	Rw7G011530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	443
AclWI	GGATC	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	1 cut(s)	123
AgsI	TTSAA	5 cut(s)	169, 352, 493, 593, 604
AjnI	CCWGG	1 cut(s)	403
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
AluBI	AGCT	3 cut(s)	8, 172, 496
AluI	AGCT	3 cut(s)	8, 172, 496
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	415
AlwNI	CAGNNNCTG	3 cut(s)	62, 83, 377
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	3 cut(s)	380, 458, 575
ApoI	RAATTY	1 cut(s)	598
Asp700I	GAANNNNTTC	1 cut(s)	233
AspA2I	CCTAGG	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	249
AvrII	CCTAGG	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	3 cut(s)	367, 470, 587
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	2 cut(s)	53, 452
BisI	GCNGC	3 cut(s)	381, 459, 576
BlnI	CCTAGG	1 cut(s)	451
BlsI	GCNGC	3 cut(s)	382, 460, 577
Bme1390I	CCNGG	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	249
BmiI	GGNNCC	3 cut(s)	364, 445, 521
BmrFI	CCNGG	1 cut(s)	405
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	4 cut(s)	140, 142, 208, 426
BmuI	ACTGGG	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	543
BsaJI	CCNNGG	2 cut(s)	416, 451
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	74
Bse3DI	GCAATG	2 cut(s)	228, 410
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	416, 451
BseGI	GGATG	2 cut(s)	157, 532
BseJI	GATNNNNATC	1 cut(s)	543
BseMI	GCAATG	2 cut(s)	228, 410
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	367, 470, 587
BsgI	GTGCAG	2 cut(s)	513, 594
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	443
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	3 cut(s)	77, 182, 257
Bsp143I	GATC	3 cut(s)	87, 407, 544
Bsp19I	CCATGG	1 cut(s)	416
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	364, 445, 521
BspPI	GGATC	1 cut(s)	415
BspT107I	GGYRCC	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	228, 410
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	416, 451
BssMI	GATC	3 cut(s)	87, 407, 544
BssT1I	CCWWGG	2 cut(s)	416, 451
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	3 cut(s)	31, 64, 85
BstC8I	GCNNGC	4 cut(s)	103, 321, 338, 423
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	157, 532
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	3 cut(s)	90, 410, 547
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	87, 407, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 380, 493
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	403
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	367, 470, 587
BstXI	CCANNNNNNTGG	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	157, 532
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	4 cut(s)	103, 321, 338, 423
CaiI	CAGNNNCTG	3 cut(s)	62, 83, 377
CfoI	GCGC	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	365
CseI	GACGC	1 cut(s)	263
CviAII	CATG	2 cut(s)	341, 417
CviJI	RGCY	8 cut(s)	8, 105, 172, 255, 365, 374, 496, 589
CviKI_1	RGCY	8 cut(s)	8, 105, 172, 255, 365, 374, 496, 589
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	3 cut(s)	89, 409, 546
DpnII	GATC	3 cut(s)	87, 407, 544
Eco130I	CCWWGG	2 cut(s)	416, 451
Eco147I	AGGCCT	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	2 cut(s)	416, 451
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	2 cut(s)	416, 451
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	2 cut(s)	344, 420
FaiI	YATR	6 cut(s)	114, 209, 239, 308, 342, 418
FatI	CATG	2 cut(s)	340, 416
Fnu4HI	GCNGC	3 cut(s)	381, 459, 576
FokI	GGATG	2 cut(s)	164, 519
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	381, 459, 576
FspBI	CTAG	2 cut(s)	53, 452
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	3 cut(s)	381, 459, 576
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	2 cut(s)	344, 420
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	2 cut(s)	243, 539
HpaII	CCGG	1 cut(s)	366
Hpy166II	GTNNAC	3 cut(s)	67, 197, 288
Hpy188I	TCNGA	3 cut(s)	22, 92, 544
Hpy188III	TCNNGA	2 cut(s)	11, 536
Hpy8I	GTNNAC	3 cut(s)	67, 197, 288
HpyAV	CCTTC	1 cut(s)	509
HpyCH4III	ACNGT	3 cut(s)	31, 64, 85
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	6 cut(s)	101, 155, 221, 340, 530, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 380, 493
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	344, 420
HspAI	GCGC	1 cut(s)	485
Kzo9I	GATC	3 cut(s)	87, 407, 544
LmnI	GCTCC	3 cut(s)	177, 362, 455
Lsp1109I	GCAGC	3 cut(s)	367, 470, 587
LweI	GCATC	4 cut(s)	140, 142, 208, 426
MaeI	CTAG	2 cut(s)	53, 452
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	3 cut(s)	89, 409, 546
MboI	GATC	3 cut(s)	87, 407, 544
MboII	GAAGA	2 cut(s)	35, 605
MfeI	CAATTG	1 cut(s)	579
MhlI	GDGCHC	3 cut(s)	77, 182, 257
MluCI	AATT	2 cut(s)	579, 598
MlyI	GAGTC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	2 cut(s)	121, 579
MroXI	GAANNNNTTC	1 cut(s)	233
MslI	CAYNNNNRTG	2 cut(s)	415, 478
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	3 cut(s)	371, 380, 493
NcoI	CCATGG	1 cut(s)	416
NdeII	GATC	3 cut(s)	87, 407, 544
NlaIII	CATG	2 cut(s)	344, 420
NlaIV	GGNNCC	3 cut(s)	364, 445, 521
NmuCI	GTSAC	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	3 cut(s)	382, 460, 577
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	3 cut(s)	364, 445, 521
PstNI	CAGNNNCTG	3 cut(s)	62, 83, 377
RseI	CAYNNNNRTG	2 cut(s)	415, 478
SatI	GCNGC	3 cut(s)	381, 459, 576
Sau3AI	GATC	3 cut(s)	87, 407, 544
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	3 cut(s)	77, 182, 257
SetI	ASST	6 cut(s)	10, 174, 236, 299, 498, 525
SfaNI	GCATC	4 cut(s)	140, 142, 208, 426
SmiMI	CAYNNNNRTG	2 cut(s)	415, 478
Sse9I	AATT	2 cut(s)	579, 598
SseBI	AGGCCT	1 cut(s)	105
SspMI	CTAG	2 cut(s)	53, 452
StuI	AGGCCT	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	2 cut(s)	416, 451
TaaI	ACNGT	3 cut(s)	31, 64, 85
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	257
TasI	AATT	2 cut(s)	579, 598
TfiI	GAWTC	1 cut(s)	539
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	3 cut(s)	380, 458, 575
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	226, 528
TspRI	CASTG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	598
XmaJI	CCTAGG	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	2 cut(s)	53, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.