Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000596.1

Orthogroup ID

OG0006145

Physical Location & Seq

Genomic Coordinates Reverse (-)

390011 .. 391624

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000596.1_g000077.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggaagctggggagaaatcagaagaaattgtatcaaaacattctccgaaactagctggaactgtcaactgtcgccggagtatttgcaggtacgggggtagcaaggaggcatctgcttcggttagcaaggatgctgaagtaatgttgaagcttgggagcacaccagacaagcatgagcaatatcgtttgatgagagatgcaatggagaaacggggtgtgcaagatgttttcaatattgtgggagctggttcagccacggctgcgacatttgggctattattgccaggatcattacaatggcgtgcaagaaatatgttactgggttcgatccttggagcagtcattggtttcccaattgggtgggcacacttgaagctggtgcagatagcaaatgaagggaatcctgctgcgcatcctaattcagatcaaagagaagcaaagagtggtgttggtgctgccattgagaggcttgaagaaaatttgaataaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

163

Amino Acids

17.47

Weight (kDa)

8.95

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63000
fragaria_vesca	FvH4_5g05480
malus_domestica	MD06G1172200.v1.1 MD14G1178100.v1.1
prunus_persica	Prupe.5G171600_v2.0.a1
pyrus_communis	pycom06g15340 pycom14g14860
rosa_chinensis	RchiOBHm_Chr7g0193351
rosa_laevigata	RLG00000004277
rosa_multiflora	Rmu_sc0000596.1_g000077 Rmu_ssc0000092.1_g000008
rosa_roxburghii	Rroxscaffold_3G00262190 Rroxscaffold_7G00204750
rosa_rugosa	Rorug06G0003000 Rorug06G0003100 Rorug07G0009100
rosa_samantha	Rh6BG115600 Rh6BG116100 Rh6CG114700 Rh6DG103100 Rh6DG103500 Rh7AG134900 Rh7AG135300 Rh7BG135600 Rh7CG139000 Rh7DG137000
rosa_wichuraiana	Rw7G011530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	411
Acc36I	ACCTGC	1 cut(s)	78
AclWI	GGATC	2 cut(s)	295, 322
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	465
AgsI	TTSAA	5 cut(s)	148, 232, 373, 473, 484
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	5 cut(s)	8, 56, 151, 245, 376
AluI	AGCT	5 cut(s)	8, 56, 151, 245, 376
Alw21I	GWGCWC	1 cut(s)	161
AlwI	GGATC	2 cut(s)	295, 322
ApeKI	GCWGC	3 cut(s)	260, 407, 455
ApoI	RAATTY	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	412
BaeGI	GKGCMC	1 cut(s)	367
BaeI	ACNNNNGTAYC	2 cut(s)	82, 115
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	247, 394, 442
BceAI	ACGGC	1 cut(s)	273
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BciT130I	CCWGG	1 cut(s)	285
BfaI	CTAG	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	78
BisI	GCNGC	3 cut(s)	261, 408, 456
BlsI	GCNGC	3 cut(s)	262, 409, 457
Bme1390I	CCNGG	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	285
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	4 cut(s)	119, 121, 187, 421
BmuI	ACTGGG	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	255, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	255, 331
BseGI	GGATG	2 cut(s)	136, 412
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMI	GCAATG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	247, 394, 442
BseYI	CCCAGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	465
Bsp1286I	GDGCHC	2 cut(s)	161, 367
Bsp143I	GATC	3 cut(s)	287, 327, 424
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	295, 322
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	2 cut(s)	255, 331
BssMI	GATC	3 cut(s)	287, 327, 424
BssT1I	CCWWGG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	64, 71
BstC8I	GCNNGC	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	136, 412
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	3 cut(s)	290, 330, 427
BstMBI	GATC	3 cut(s)	287, 327, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 260, 280
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	283
BstSLI	GKGCMC	1 cut(s)	367
BstV1I	GCAGC	3 cut(s)	247, 394, 442
BstXI	CCANNNNNNTGG	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	136, 412
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	9 cut(s)	8, 56, 151, 245, 254, 260, 274, 376, 469
CviKI_1	RGCY	9 cut(s)	8, 56, 151, 245, 254, 260, 274, 376, 469
CviQI	GTAC	1 cut(s)	91
DpnI	GATC	3 cut(s)	289, 329, 426
DpnII	GATC	3 cut(s)	287, 327, 424
Eco130I	CCWWGG	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	1 cut(s)	176
FaiI	YATR	2 cut(s)	174, 314
FatI	CATG	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	261, 408, 456
FokI	GGATG	2 cut(s)	143, 399
Fsp4HI	GCNGC	3 cut(s)	261, 408, 456
FspBI	CTAG	1 cut(s)	53
FspI	TGCGCA	1 cut(s)	411
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	3 cut(s)	261, 408, 456
GsaI	CCCAGC	1 cut(s)	12
HapII	CCGG	1 cut(s)	76
HhaI	GCGC	1 cut(s)	412
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	1 cut(s)	400
HpaII	CCGG	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	22, 48, 424
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	2 cut(s)	64, 71
HpyCH4V	TGCA	5 cut(s)	87, 200, 220, 305, 382
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 260, 280
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	3 cut(s)	287, 327, 424
LmnI	GCTCC	3 cut(s)	156, 242, 335
Lsp1109I	GCAGC	3 cut(s)	247, 394, 442
LweI	GCATC	4 cut(s)	119, 121, 187, 421
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	315
MalI	GATC	3 cut(s)	289, 329, 426
MboI	GATC	3 cut(s)	287, 327, 424
MboII	GAAGA	2 cut(s)	35, 485
MfeI	CAATTG	1 cut(s)	354
MhlI	GDGCHC	2 cut(s)	161, 367
MluCI	AATT	4 cut(s)	27, 354, 418, 478
MnlI	CCTC	2 cut(s)	100, 459
MslI	CAYNNNNRTG	1 cut(s)	295
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	251, 260, 280
NdeII	GATC	3 cut(s)	287, 327, 424
NlaIII	CATG	1 cut(s)	176
NsbI	TGCGCA	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	400
PkrI	GCNGC	3 cut(s)	262, 409, 457
Psp6I	CCWGG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	295
SatI	GCNGC	3 cut(s)	261, 408, 456
Sau3AI	GATC	3 cut(s)	287, 327, 424
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	2 cut(s)	161, 367
SetI	ASST	6 cut(s)	10, 58, 92, 153, 247, 378
SfaNI	GCATC	4 cut(s)	119, 121, 187, 421
SmiMI	CAYNNNNRTG	1 cut(s)	295
Sse9I	AATT	4 cut(s)	27, 354, 418, 478
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	64, 71
TaqI	TCGA	1 cut(s)	326
TasI	AATT	4 cut(s)	27, 354, 418, 478
TfiI	GAWTC	1 cut(s)	400
TseI	GCWGC	3 cut(s)	260, 407, 455
TspDTI	ATGAA	1 cut(s)	408
XapI	RAATTY	1 cut(s)	478
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.