Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006145

Physical Location & Seq

Genomic Coordinates Forward (+)

17531481 .. 17532894

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g14860.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAGCTCCCGAAGACCCCGTCTCAAACGTAATGGATCATCCTTTGCTTTCTCCGAAACTATCAGGAACTGTCAACTGGGGCACGGCGACTGTCATCGGAGTGTTTGCAGGCTTGTTTTACGGTGGTAGCAAGGAAGCAGCTGCTTCAGTTTGTTGTAATCTTCGAAAAGATTGGATATCGACAGACATATTTGATTGGCAGAGCAAAGATGCAGAAGTAATGTTGAAGCTGGGGAGCACGCCAGACAAGCGTGAACAATATCGTCTCATGAGAGATGCAATGGAGAAAAGGTTCATTCGTGTCACTCGGGGCTCGATAGTTGGTGGAGTGCGTCTTGGATTGTTTACTGCAACCTTTTGTGGTATACAGAATCTGTTTGCCGAGAAAAGGGGCGTGCACGATGTTTTCAATGTTGTTGGAGCCGGATCAGCCACTGCTGCTACGTTTGCTCTAATAATGCCCGGATCATTGGCTTGGCGAGCAAGAAACGTGATGTTGGGTGCTGCCCTAGGGGCGGCGTTTGGTTTTCCACTTGGGTGGGCCCATTTGAAGCTGGTAGAGAAGGCAAATGAAGGGAATGCGGCTGCACATCCTGATTCAGATCAAAGAGAAGCAAGGAGTGGTGTTGGCGCTGCAATTGACAGGCTGGAAGAAAACTTGAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

224

Amino Acids

24.0

Weight (kDa)

7.74

Isoelectric Point (pI)

23.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006145)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63000
fragaria_vesca	FvH4_5g05480
malus_domestica	MD06G1172200.v1.1 MD14G1178100.v1.1
prunus_persica	Prupe.5G171600_v2.0.a1
pyrus_communis	pycom06g15340 pycom14g14860
rosa_chinensis	RchiOBHm_Chr7g0193351
rosa_laevigata	RLG00000004277
rosa_multiflora	Rmu_sc0000596.1_g000077 Rmu_ssc0000092.1_g000008
rosa_roxburghii	Rroxscaffold_3G00262190 Rroxscaffold_7G00204750
rosa_rugosa	Rorug06G0003000 Rorug06G0003100 Rorug07G0009100
rosa_samantha	Rh6BG115600 Rh6BG116100 Rh6CG114700 Rh6DG103100 Rh6DG103500 Rh7AG134900 Rh7AG135300 Rh7BG135600 Rh7CG139000 Rh7DG137000
rosa_wichuraiana	Rw7G011530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	367
AciI	CCGC	2 cut(s)	518, 584
AclWI	GGATC	3 cut(s)	45, 436, 475
AcuI	CTGAAG	1 cut(s)	132
AfiI	CCNNNNNNNGG	2 cut(s)	390, 517
AgsI	TTSAA	4 cut(s)	229, 412, 553, 664
AleI	CACNNNNGTG	1 cut(s)	538
AloI	GAACNNNNNNTCC	2 cut(s)	278, 310
AluBI	AGCT	4 cut(s)	8, 143, 232, 556
AluI	AGCT	4 cut(s)	8, 143, 232, 556
Alw21I	GWGCWC	2 cut(s)	242, 402
Alw26I	GTCTC	2 cut(s)	28, 272
Alw44I	GTGCAC	1 cut(s)	398
AlwI	GGATC	3 cut(s)	45, 436, 475
AlwNI	CAGNNNCTG	3 cut(s)	71, 376, 437
Ama87I	CYCGRG	1 cut(s)	309
AoxI	GGCC	1 cut(s)	543
ApaI	GGGCCC	1 cut(s)	547
ApaLI	GTGCAC	1 cut(s)	398
ApeKI	GCWGC	6 cut(s)	140, 143, 440, 506, 587, 635
ArsI	GACNNNNNNTTYG	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	293
AspA2I	CCTAGG	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	2 cut(s)	543, 544
AsuC2I	CCSGG	1 cut(s)	465
AsuII	TTCGAA	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	309
AvrII	CCTAGG	1 cut(s)	511
BaeGI	GKGCMC	3 cut(s)	86, 402, 547
BanII	GRGCYC	2 cut(s)	317, 547
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	2 cut(s)	242, 402
BbvI	GCAGC	6 cut(s)	130, 152, 427, 493, 574, 622
BceAI	ACGGC	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	2 cut(s)	28, 272
BfaI	CTAG	1 cut(s)	512
BfoI	RGCGCY	1 cut(s)	636
BglI	GCCNNNNNGGC	1 cut(s)	515
BisI	GCNGC	8 cut(s)	141, 144, 441, 507, 519, 585, 588, 636
BlnI	CCTAGG	1 cut(s)	511
BlsI	GCNGC	8 cut(s)	142, 145, 442, 508, 520, 586, 589, 637
Bme1390I	CCNGG	1 cut(s)	465
BmeT110I	CYCGRG	1 cut(s)	309
BmgT120I	GGNCC	2 cut(s)	543, 544
BmiI	GGNNCC	2 cut(s)	424, 545
BmrFI	CCNGG	1 cut(s)	465
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	2 cut(s)	202, 268
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	166
BpuMI	CCSGG	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	603
BsaJI	CCNNGG	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 517
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	603
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	2 cut(s)	40, 592
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	2 cut(s)	390, 517
BseMI	GCAATG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	83
BseSI	GKGCMC	3 cut(s)	86, 402, 547
BseXI	GCAGC	6 cut(s)	130, 152, 427, 493, 574, 622
BseYI	CCCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	1 cut(s)	545
BsiHKAI	GWGCWC	2 cut(s)	242, 402
BsiHKCI	CYCGRG	1 cut(s)	309
BsiSI	CCGG	2 cut(s)	426, 465
BslI	CCNNNNNNNGG	2 cut(s)	390, 517
BsmAI	GTCTC	2 cut(s)	28, 272
BsmBI	CGTCTC	2 cut(s)	28, 272
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	1 cut(s)	545
BsoBI	CYCGRG	1 cut(s)	309
Bsp119I	TTCGAA	1 cut(s)	166
Bsp120I	GGGCCC	1 cut(s)	543
Bsp1286I	GDGCHC	5 cut(s)	86, 242, 317, 402, 547
Bsp143I	GATC	4 cut(s)	37, 428, 467, 604
BspACI	CCGC	2 cut(s)	518, 584
BspANI	GGCC	1 cut(s)	545
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	424, 545
BspPI	GGATC	3 cut(s)	45, 436, 475
BspT104I	TTCGAA	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	4 cut(s)	37, 428, 467, 604
BssNAI	GTATAC	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	511
Bst1107I	GTATAC	1 cut(s)	368
Bst4CI	ACNGT	3 cut(s)	73, 94, 125
BstBI	TTCGAA	1 cut(s)	166
BstC8I	GCNNGC	4 cut(s)	112, 242, 398, 483
BstF5I	GGATG	2 cut(s)	40, 592
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	4 cut(s)	40, 431, 470, 607
BstMAI	GTCTC	2 cut(s)	28, 272
BstMBI	GATC	4 cut(s)	37, 428, 467, 604
BstMWI	GCNNNNNNNGC	6 cut(s)	250, 431, 440, 449, 482, 515
BstSCI	CCNGG	1 cut(s)	463
BstSLI	GKGCMC	3 cut(s)	86, 402, 547
BstV1I	GCAGC	6 cut(s)	130, 152, 427, 493, 574, 622
BstV2I	GAAGAC	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	540
BstZ17I	GTATAC	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	545
BtsCI	GGATG	2 cut(s)	40, 592
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	4 cut(s)	112, 242, 398, 483
CaiI	CAGNNNCTG	3 cut(s)	71, 376, 437
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	1 cut(s)	635
Cfr13I	GGNCC	2 cut(s)	543, 544
CseI	GACGC	1 cut(s)	323
CviAII	CATG	1 cut(s)	271
DpnI	GATC	4 cut(s)	39, 430, 469, 606
DpnII	GATC	4 cut(s)	37, 428, 467, 604
Eco130I	CCWWGG	1 cut(s)	511
Eco24I	GRGCYC	2 cut(s)	317, 547
Eco32I	GATATC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	309
EcoRV	GATATC	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	511
EcoT38I	GRGCYC	2 cut(s)	317, 547
ErhI	CCWWGG	1 cut(s)	511
Esp3I	CGTCTC	2 cut(s)	28, 272
FaeI	CATG	1 cut(s)	274
FaiI	YATR	3 cut(s)	191, 272, 368
FatI	CATG	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	8 cut(s)	141, 144, 441, 507, 519, 585, 588, 636
FokI	GGATG	2 cut(s)	27, 579
FriOI	GRGCYC	2 cut(s)	317, 547
Fsp4HI	GCNGC	8 cut(s)	141, 144, 441, 507, 519, 585, 588, 636
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	8 cut(s)	141, 144, 441, 507, 519, 585, 588, 636
GsaI	CCCAGC	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	545
HapII	CCGG	2 cut(s)	426, 465
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	373, 599
HpaII	CCGG	2 cut(s)	426, 465
Hpy166II	GTNNAC	5 cut(s)	76, 257, 348, 368, 400
Hpy188I	TCNGA	3 cut(s)	57, 101, 604
Hpy188III	TCNNGA	4 cut(s)	11, 66, 271, 596
Hpy8I	GTNNAC	5 cut(s)	76, 257, 348, 368, 400
HpyAV	CCTTC	2 cut(s)	559, 569
HpyCH4III	ACNGT	3 cut(s)	73, 94, 125
HpyCH4IV	ACGT	3 cut(s)	30, 446, 492
HpyCH4V	TGCA	7 cut(s)	110, 215, 281, 353, 400, 590, 638
HpyF10VI	GCNNNNNNNGC	6 cut(s)	250, 431, 440, 449, 482, 515
HpySE526I	ACGT	3 cut(s)	30, 446, 492
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	633
Kzo9I	GATC	4 cut(s)	37, 428, 467, 604
LmnI	GCTCC	3 cut(s)	13, 237, 422
Lsp1109I	GCAGC	6 cut(s)	130, 152, 427, 493, 574, 622
LweI	GCATC	2 cut(s)	202, 268
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	3 cut(s)	30, 446, 492
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	4 cut(s)	39, 430, 469, 606
MboI	GATC	4 cut(s)	37, 428, 467, 604
MboII	GAAGA	3 cut(s)	26, 155, 665
MfeI	CAATTG	1 cut(s)	639
MhlI	GDGCHC	5 cut(s)	86, 242, 317, 402, 547
MluCI	AATT	1 cut(s)	639
MmeI	TCCRAC	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	293
MslI	CAYNNNNRTG	2 cut(s)	101, 538
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	2 cut(s)	426, 465
MspR9I	CCNGG	1 cut(s)	465
MunI	CAATTG	1 cut(s)	639
Mva1269I	GAATGC	1 cut(s)	586
MwoI	GCNNNNNNNGC	6 cut(s)	250, 431, 440, 449, 482, 515
NciI	CCSGG	1 cut(s)	465
NdeII	GATC	4 cut(s)	37, 428, 467, 604
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	2 cut(s)	424, 545
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	304
NspV	TTCGAA	1 cut(s)	166
OliI	CACNNNNGTG	1 cut(s)	538
PagI	TCATGA	1 cut(s)	270
PctI	GAATGC	1 cut(s)	586
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	373, 599
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	8 cut(s)	142, 145, 442, 508, 520, 586, 589, 637
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	424, 545
PspOMI	GGGCCC	1 cut(s)	543
PspPI	GGNCC	2 cut(s)	543, 544
PstNI	CAGNNNCTG	3 cut(s)	71, 376, 437
PsyI	GACNNNGTC	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	143
RseI	CAYNNNNRTG	2 cut(s)	101, 538
SatI	GCNGC	8 cut(s)	141, 144, 441, 507, 519, 585, 588, 636
Sau3AI	GATC	4 cut(s)	37, 428, 467, 604
Sau96I	GGNCC	2 cut(s)	543, 544
ScrFI	CCNGG	1 cut(s)	465
SduI	GDGCHC	5 cut(s)	86, 242, 317, 402, 547
SetI	ASST	9 cut(s)	10, 33, 145, 234, 296, 359, 449, 495, 558
SfaNI	GCATC	2 cut(s)	202, 268
SfuI	TTCGAA	1 cut(s)	166
SmiMI	CAYNNNNRTG	2 cut(s)	101, 538
Sse9I	AATT	1 cut(s)	639
SsiI	CCGC	2 cut(s)	518, 584
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	463
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	73, 94, 125
TaiI	ACGT	3 cut(s)	33, 449, 495
TaqI	TCGA	3 cut(s)	166, 182, 317
TasI	AATT	1 cut(s)	639
TauI	GCSGC	2 cut(s)	521, 587
TfiI	GAWTC	2 cut(s)	373, 599
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	6 cut(s)	140, 143, 440, 506, 587, 635
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	286, 588
TspRI	CASTG	1 cut(s)	442
Tth111I	GACNNNGTC	1 cut(s)	20
VneI	GTGCAC	1 cut(s)	398
XmaJI	CCTAGG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	367
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.