Tim17/Tim22/Tim23/Pmp24 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G63000 |
| fragaria_vesca | FvH4_5g05480 |
| malus_domestica | MD06G1172200.v1.1 MD14G1178100.v1.1 |
| prunus_persica | Prupe.5G171600_v2.0.a1 |
| pyrus_communis | pycom06g15340 pycom14g14860 |
| rosa_chinensis | RchiOBHm_Chr7g0193351 |
| rosa_laevigata | RLG00000004277 |
| rosa_multiflora | Rmu_sc0000596.1_g000077 Rmu_ssc0000092.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00262190 Rroxscaffold_7G00204750 |
| rosa_rugosa | Rorug06G0003000 Rorug06G0003100 Rorug07G0009100 |
| rosa_samantha | Rh6BG115600 Rh6BG116100 Rh6CG114700 Rh6DG103100 Rh6DG103500 Rh7AG134900 Rh7AG135300 Rh7BG135600 Rh7CG139000 Rh7DG137000 |
| rosa_wichuraiana | Rw7G011530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 216 |
| AclWI | GGATC | 2 cut(s) | 100, 127 |
| AcsI | RAATTY | 1 cut(s) | 283 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 270 |
| AgsI | TTSAA | 4 cut(s) | 37, 178, 278, 289 |
| AjnI | CCWGG | 1 cut(s) | 88 |
| AluBI | AGCT | 2 cut(s) | 50, 181 |
| AluI | AGCT | 2 cut(s) | 50, 181 |
| AlwI | GGATC | 2 cut(s) | 100, 127 |
| ApeKI | GCWGC | 3 cut(s) | 65, 212, 260 |
| ApoI | RAATTY | 1 cut(s) | 283 |
| AspLEI | GCGC | 1 cut(s) | 217 |
| BaeGI | GKGCMC | 1 cut(s) | 172 |
| BbvI | GCAGC | 3 cut(s) | 52, 199, 247 |
| BceAI | ACGGC | 1 cut(s) | 78 |
| BciT130I | CCWGG | 1 cut(s) | 90 |
| BisI | GCNGC | 3 cut(s) | 66, 213, 261 |
| BlsI | GCNGC | 3 cut(s) | 67, 214, 262 |
| Bme1390I | CCNGG | 1 cut(s) | 90 |
| BmrFI | CCNGG | 1 cut(s) | 90 |
| BmrI | ACTGGG | 1 cut(s) | 134 |
| BmsI | GCATC | 1 cut(s) | 226 |
| BmuI | ACTGGG | 1 cut(s) | 134 |
| BsaJI | CCNNGG | 2 cut(s) | 60, 136 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 270 |
| Bse1I | ACTGG | 1 cut(s) | 129 |
| BseBI | CCWGG | 1 cut(s) | 90 |
| BseDI | CCNNGG | 2 cut(s) | 60, 136 |
| BseGI | GGATG | 1 cut(s) | 217 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 270 |
| BseNI | ACTGG | 1 cut(s) | 129 |
| BseSI | GKGCMC | 1 cut(s) | 172 |
| BseXI | GCAGC | 3 cut(s) | 52, 199, 247 |
| BsgI | GTGCAG | 1 cut(s) | 206 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 270 |
| Bsp1286I | GDGCHC | 1 cut(s) | 172 |
| Bsp143I | GATC | 3 cut(s) | 92, 132, 229 |
| BspPI | GGATC | 2 cut(s) | 100, 127 |
| BsrI | ACTGG | 1 cut(s) | 129 |
| BssECI | CCNNGG | 2 cut(s) | 60, 136 |
| BssMI | GATC | 3 cut(s) | 92, 132, 229 |
| BssT1I | CCWWGG | 1 cut(s) | 136 |
| Bst2UI | CCWGG | 1 cut(s) | 90 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 108 |
| BstDEI | CTNAG | 1 cut(s) | 9 |
| BstDSI | CCRYGG | 1 cut(s) | 60 |
| BstF5I | GGATG | 1 cut(s) | 217 |
| BstHHI | GCGC | 1 cut(s) | 217 |
| BstKTI | GATC | 3 cut(s) | 95, 135, 232 |
| BstMBI | GATC | 3 cut(s) | 92, 132, 229 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 65, 85 |
| BstNI | CCWGG | 1 cut(s) | 90 |
| BstSCI | CCNGG | 1 cut(s) | 88 |
| BstSLI | GKGCMC | 1 cut(s) | 172 |
| BstV1I | GCAGC | 3 cut(s) | 52, 199, 247 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 165 |
| BtgI | CCRYGG | 1 cut(s) | 60 |
| BtsCI | GGATG | 1 cut(s) | 217 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 108 |
| CfoI | GCGC | 1 cut(s) | 217 |
| CviJI | RGCY | 6 cut(s) | 50, 59, 65, 79, 181, 274 |
| CviKI_1 | RGCY | 6 cut(s) | 50, 59, 65, 79, 181, 274 |
| DdeI | CTNAG | 1 cut(s) | 9 |
| DpnI | GATC | 3 cut(s) | 94, 134, 231 |
| DpnII | GATC | 3 cut(s) | 92, 132, 229 |
| Eco130I | CCWWGG | 1 cut(s) | 136 |
| EcoRII | CCWGG | 1 cut(s) | 88 |
| EcoT14I | CCWWGG | 1 cut(s) | 136 |
| ErhI | CCWWGG | 1 cut(s) | 136 |
| FaiI | YATR | 1 cut(s) | 119 |
| Fnu4HI | GCNGC | 3 cut(s) | 66, 213, 261 |
| FokI | GGATG | 1 cut(s) | 204 |
| Fsp4HI | GCNGC | 3 cut(s) | 66, 213, 261 |
| FspI | TGCGCA | 1 cut(s) | 216 |
| GlaI | GCGC | 1 cut(s) | 216 |
| GluI | GCNGC | 3 cut(s) | 66, 213, 261 |
| HhaI | GCGC | 1 cut(s) | 217 |
| Hin6I | GCGC | 1 cut(s) | 215 |
| HinP1I | GCGC | 1 cut(s) | 215 |
| HinfI | GANTC | 1 cut(s) | 205 |
| Hpy188I | TCNGA | 1 cut(s) | 229 |
| HpyAV | CCTTC | 1 cut(s) | 194 |
| HpyCH4V | TGCA | 3 cut(s) | 25, 110, 187 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 65, 85 |
| HpyF3I | CTNAG | 1 cut(s) | 9 |
| HspAI | GCGC | 1 cut(s) | 215 |
| Kzo9I | GATC | 3 cut(s) | 92, 132, 229 |
| LmnI | GCTCC | 2 cut(s) | 47, 140 |
| LpnPI | CCDG | 6 cut(s) | 36, 75, 102, 110, 167, 222 |
| Lsp1109I | GCAGC | 3 cut(s) | 52, 199, 247 |
| LweI | GCATC | 1 cut(s) | 226 |
| MaeIII | GTNAC | 1 cut(s) | 120 |
| MalI | GATC | 3 cut(s) | 94, 134, 231 |
| MboI | GATC | 3 cut(s) | 92, 132, 229 |
| MboII | GAAGA | 1 cut(s) | 290 |
| MfeI | CAATTG | 1 cut(s) | 159 |
| MhlI | GDGCHC | 1 cut(s) | 172 |
| MluCI | AATT | 3 cut(s) | 159, 223, 283 |
| MnlI | CCTC | 1 cut(s) | 264 |
| MslI | CAYNNNNRTG | 1 cut(s) | 100 |
| MspR9I | CCNGG | 1 cut(s) | 90 |
| MunI | CAATTG | 1 cut(s) | 159 |
| MvaI | CCWGG | 1 cut(s) | 90 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 65, 85 |
| NdeII | GATC | 3 cut(s) | 92, 132, 229 |
| NsbI | TGCGCA | 1 cut(s) | 216 |
| PfeI | GAWTC | 1 cut(s) | 205 |
| PkrI | GCNGC | 3 cut(s) | 67, 214, 262 |
| Psp6I | CCWGG | 1 cut(s) | 88 |
| PspGI | CCWGG | 1 cut(s) | 88 |
| RseI | CAYNNNNRTG | 1 cut(s) | 100 |
| SatI | GCNGC | 3 cut(s) | 66, 213, 261 |
| Sau3AI | GATC | 3 cut(s) | 92, 132, 229 |
| ScrFI | CCNGG | 1 cut(s) | 90 |
| SduI | GDGCHC | 1 cut(s) | 172 |
| SetI | ASST | 2 cut(s) | 52, 183 |
| SfaNI | GCATC | 1 cut(s) | 226 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 100 |
| Sse9I | AATT | 3 cut(s) | 159, 223, 283 |
| SspI | AATATT | 1 cut(s) | 40 |
| StyD4I | CCNGG | 1 cut(s) | 88 |
| StyI | CCWWGG | 1 cut(s) | 136 |
| TaqI | TCGA | 1 cut(s) | 131 |
| TasI | AATT | 3 cut(s) | 159, 223, 283 |
| TfiI | GAWTC | 1 cut(s) | 205 |
| TseI | GCWGC | 3 cut(s) | 65, 212, 260 |
| TspDTI | ATGAA | 1 cut(s) | 213 |
| XapI | RAATTY | 1 cut(s) | 283 |