Rh7AG134900

Tim17/Tim22/Tim23/Pmp24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006145
Physical Location & Seq
Forward (+)
10801853 .. 10802969
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG134900.1

Sequence Viewer

Length: 621 bp
ATGCATTACTGTTTGTATCTAGAGAATAACATTGTCTATTTTGAATCAGCATTCTCCGAAACTAGCTGGAACTGTCAACTGGGAACAGCAACTGTCGCCGGAGTATTTGCAGGCATGTTGTACGGGGGTAGCAAGGAGGCATCTGCTTCGGTTAGCAAGGATGCTGAAGTAATGTTGAAGCTTGGGAGCACACCAGACAAGCGTGAGCAATATCGTTTGATGAGAGATGCAATGGAGAAACGGTTCATTCGAGTCACGCGGGGCTCAATAGTTGGTGGAGTGCGTCTTGGATTGTTCACTGCTACCTTTTATGGTTTACAAAATCTGCTTGCTGAGAAAAGGGGTGTGCAAGATGTTTTCAATATTGTGGGAGCTGGTTCAGCCACGGCTGCGACATTCGGGCTATTATTGCCAGGATCATTACAATGGCGTGCAAGAAATATGTTACTGGGTTCGATCCTTGGAGCAGTCATTGGTTTCCCAATTGGGTGGGCACACTTGAAGCTGGTGCAGATAGCAAATGAAGGGAATCCTGCTGCGCATCCTAATTCAGATCAAAGAGAAGCAAAGAGTGGTGTTGGTGCTGCCATTGAGAGGCTTGAAGAAAATTTGAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

206

Amino Acids

22.29

Weight (kDa)

8.91

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 27 - 158 2e-09 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 540
AccII CGCG 1 cut(s) 259
AciI CCGC 1 cut(s) 259
AclWI GGATC 2 cut(s) 424, 451
AcsI RAATTY 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 594
AgsI TTSAA 6 cut(s) 44, 178, 361, 502, 602, 613
AjnI CCWGG 1 cut(s) 412
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 4 cut(s) 66, 181, 374, 505
AluI AGCT 4 cut(s) 66, 181, 374, 505
Alw21I GWGCWC 1 cut(s) 191
AlwI GGATC 2 cut(s) 424, 451
AlwNI CAGNNNCTG 1 cut(s) 92
ApeKI GCWGC 3 cut(s) 389, 536, 584
ApoI RAATTY 1 cut(s) 607
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 541
BaeGI GKGCMC 1 cut(s) 496
BanII GRGCYC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 3 cut(s) 376, 523, 571
BceAI ACGGC 1 cut(s) 402
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BciT130I CCWGG 1 cut(s) 414
BfaI CTAG 2 cut(s) 20, 63
BisI GCNGC 3 cut(s) 390, 537, 585
BlsI GCNGC 3 cut(s) 391, 538, 586
Bme1390I CCNGG 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 414
BmrI ACTGGG 2 cut(s) 89, 458
BmsI GCATC 4 cut(s) 149, 151, 217, 550
BmuI ACTGGG 2 cut(s) 89, 458
BsaJI CCNNGG 2 cut(s) 384, 460
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 594
Bse1I ACTGG 2 cut(s) 84, 453
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 384, 460
BseGI GGATG 2 cut(s) 166, 541
BseLI CCNNNNNNNGG 1 cut(s) 594
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 2 cut(s) 84, 453
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 3 cut(s) 376, 523, 571
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 594
BsmI GAATGC 1 cut(s) 50
Bsp1286I GDGCHC 3 cut(s) 191, 266, 496
Bsp143I GATC 3 cut(s) 416, 456, 553
BspACI CCGC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 1 cut(s) 259
BspPI GGATC 2 cut(s) 424, 451
BsrDI GCAATG 1 cut(s) 237
BsrI ACTGG 2 cut(s) 84, 453
BssECI CCNNGG 2 cut(s) 384, 460
BssMI GATC 3 cut(s) 416, 456, 553
BssT1I CCWWGG 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 4 cut(s) 11, 74, 94, 243
BstC8I GCNNGC 3 cut(s) 112, 330, 432
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 2 cut(s) 166, 541
BstFNI CGCG 1 cut(s) 259
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 3 cut(s) 419, 459, 556
BstMBI GATC 3 cut(s) 416, 456, 553
BstMWI GCNNNNNNNGC 4 cut(s) 95, 380, 389, 409
BstNI CCWGG 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 412
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 3 cut(s) 376, 523, 571
BstXI CCANNNNNNTGG 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 2 cut(s) 166, 541
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 3 cut(s) 112, 330, 432
CaiI CAGNNNCTG 1 cut(s) 92
CfoI GCGC 1 cut(s) 541
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 115
CviJI RGCY 9 cut(s) 66, 181, 264, 374, 383, 389, 403, 505, 598
CviKI_1 RGCY 9 cut(s) 66, 181, 264, 374, 383, 389, 403, 505, 598
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 333
DpnI GATC 3 cut(s) 418, 458, 555
DpnII GATC 3 cut(s) 416, 456, 553
Eco130I CCWWGG 1 cut(s) 460
Eco24I GRGCYC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 460
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 1 cut(s) 118
FaiI YATR 3 cut(s) 116, 312, 443
FatI CATG 1 cut(s) 114
FauI CCCGC 1 cut(s) 252
Fnu4HI GCNGC 3 cut(s) 390, 537, 585
FokI GGATG 2 cut(s) 173, 528
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 3 cut(s) 390, 537, 585
FspBI CTAG 2 cut(s) 20, 63
FspI TGCGCA 1 cut(s) 540
GlaI GCGC 1 cut(s) 540
GluI GCNGC 3 cut(s) 390, 537, 585
HapII CCGG 1 cut(s) 99
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 541
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HincII GTYRAC 1 cut(s) 77
HindII GTYRAC 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 3 cut(s) 44, 252, 529
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 3 cut(s) 77, 297, 317
Hpy188I TCNGA 2 cut(s) 58, 553
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 3 cut(s) 77, 297, 317
HpyAV CCTTC 1 cut(s) 518
HpyCH4III ACNGT 4 cut(s) 11, 74, 94, 243
HpyCH4V TGCA 6 cut(s) 4, 110, 230, 349, 434, 511
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 380, 389, 409
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 1 cut(s) 539
Kzo9I GATC 3 cut(s) 416, 456, 553
LmnI GCTCC 3 cut(s) 186, 371, 464
Lsp1109I GCAGC 3 cut(s) 376, 523, 571
LweI GCATC 4 cut(s) 149, 151, 217, 550
MaeI CTAG 2 cut(s) 20, 63
MaeIII GTNAC 2 cut(s) 253, 444
MalI GATC 3 cut(s) 418, 458, 555
MboI GATC 3 cut(s) 416, 456, 553
MboII GAAGA 1 cut(s) 614
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 3 cut(s) 191, 266, 496
MluCI AATT 3 cut(s) 483, 547, 607
MlyI GAGTC 1 cut(s) 261
MnlI CCTC 2 cut(s) 130, 588
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 424
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 414
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 50
MvaI CCWGG 1 cut(s) 414
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 4 cut(s) 95, 380, 389, 409
NdeII GATC 3 cut(s) 416, 456, 553
NlaIII CATG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 253
NsbI TGCGCA 1 cut(s) 540
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PctI GAATGC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 2 cut(s) 44, 529
PkrI GCNGC 3 cut(s) 391, 538, 586
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 424
SatI GCNGC 3 cut(s) 390, 537, 585
Sau3AI GATC 3 cut(s) 416, 456, 553
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 3 cut(s) 191, 266, 496
SetI ASST 5 cut(s) 68, 183, 308, 376, 507
SfaNI GCATC 4 cut(s) 149, 151, 217, 550
SmiMI CAYNNNNRTG 1 cut(s) 424
Sse9I AATT 3 cut(s) 483, 547, 607
SsiI CCGC 1 cut(s) 259
SspI AATATT 1 cut(s) 364
SspMI CTAG 2 cut(s) 20, 63
StyD4I CCNGG 1 cut(s) 412
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 4 cut(s) 11, 74, 94, 243
TaqI TCGA 2 cut(s) 250, 455
TasI AATT 3 cut(s) 483, 547, 607
TfiI GAWTC 2 cut(s) 44, 529
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 3 cut(s) 389, 536, 584
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 235, 537
TspRI CASTG 1 cut(s) 304
XapI RAATTY 1 cut(s) 607
XbaI TCTAGA 1 cut(s) 19
XceI RCATGY 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 2 cut(s) 20, 63
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.