Rh7AG135300

Tim17/Tim22/Tim23/Pmp24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006145
Physical Location & Seq
Forward (+)
10809392 .. 10811113
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG135300.1

Sequence Viewer

Length: 450 bp
ATGTTGAAGCTTGGGAGCACACCAGACAAGCGTGAGCAATATCGTTTGATGAGAGATGCAATGGAGAAACGGTTCATTCGAGTCACACGGGGCTCAATAGTTGGTGGAGTGCGTCTTGGATTGTTCACTGCTACCTTTTATGGTTTACAAAATCTGCTTGCTGAGAAAAGGGGTGTGCAAGATGTTTTCAATATTGTGGGAGCTGGTTCAGCCACGGCTGCGACATTCGGGCTATTATTGCCAGGATCATTACAATGGCGTGCAAGAAATATGTTACTGGGTTCGATCCTTGGAGCAGTCATTGGTTTCCCAATTGGGTGGGCACACTTGAAGCTGGTGCAGATAGCAAATGAAGGGAATCCTGCTGCGCATCCTAATTCAGATCAAAGAGAAGCAAAGAGTGGTGTTGGTGCTGCCATTGAGAGGCTTGAAGAAAATTTGAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

149

Amino Acids

16.16

Weight (kDa)

10.26

Isoelectric Point (pI)

29.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 17 - 101 3.1e-07 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 369
AclWI GGATC 2 cut(s) 253, 280
AcsI RAATTY 1 cut(s) 436
AfiI CCNNNNNNNGG 1 cut(s) 423
AgsI TTSAA 5 cut(s) 7, 190, 331, 431, 442
AjnI CCWGG 1 cut(s) 241
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 3 cut(s) 10, 203, 334
AluI AGCT 3 cut(s) 10, 203, 334
Alw21I GWGCWC 1 cut(s) 20
AlwI GGATC 2 cut(s) 253, 280
ApeKI GCWGC 3 cut(s) 218, 365, 413
ApoI RAATTY 1 cut(s) 436
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 370
BaeGI GKGCMC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 3 cut(s) 205, 352, 400
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 1 cut(s) 243
BisI GCNGC 3 cut(s) 219, 366, 414
BlsI GCNGC 3 cut(s) 220, 367, 415
Bme1390I CCNGG 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 243
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 2 cut(s) 46, 379
BmuI ACTGGG 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 213, 289
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 213, 289
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 3 cut(s) 205, 352, 400
BsgI GTGCAG 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 423
Bsp1286I GDGCHC 3 cut(s) 20, 95, 325
Bsp143I GATC 3 cut(s) 245, 285, 382
BspCNI CTCAG 1 cut(s) 154
BspPI GGATC 2 cut(s) 253, 280
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 213, 289
BssMI GATC 3 cut(s) 245, 285, 382
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 159, 261
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 370
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 3 cut(s) 248, 288, 385
BstMBI GATC 3 cut(s) 245, 285, 382
BstMWI GCNNNNNNNGC 3 cut(s) 209, 218, 238
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 325
BstV1I GCAGC 3 cut(s) 205, 352, 400
BstXI CCANNNNNNTGG 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 159, 261
CfoI GCGC 1 cut(s) 370
CseI GACGC 1 cut(s) 101
CviJI RGCY 8 cut(s) 10, 93, 203, 212, 218, 232, 334, 427
CviKI_1 RGCY 8 cut(s) 10, 93, 203, 212, 218, 232, 334, 427
DdeI CTNAG 1 cut(s) 162
DpnI GATC 3 cut(s) 247, 287, 384
DpnII GATC 3 cut(s) 245, 285, 382
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 289
FaiI YATR 2 cut(s) 141, 272
Fnu4HI GCNGC 3 cut(s) 219, 366, 414
FokI GGATG 1 cut(s) 357
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 219, 366, 414
FspI TGCGCA 1 cut(s) 369
GlaI GCGC 1 cut(s) 369
GluI GCNGC 3 cut(s) 219, 366, 414
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 370
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 81, 358
Hpy166II GTNNAC 2 cut(s) 126, 146
Hpy188I TCNGA 1 cut(s) 382
Hpy8I GTNNAC 2 cut(s) 126, 146
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 4 cut(s) 59, 178, 263, 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 218, 238
HpyF3I CTNAG 1 cut(s) 162
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 3 cut(s) 245, 285, 382
LmnI GCTCC 3 cut(s) 15, 200, 293
LpnPI CCDG 7 cut(s) 36, 189, 228, 255, 263, 320, 375
Lsp1109I GCAGC 3 cut(s) 205, 352, 400
LweI GCATC 2 cut(s) 46, 379
MaeIII GTNAC 2 cut(s) 82, 273
MalI GATC 3 cut(s) 247, 287, 384
MboI GATC 3 cut(s) 245, 285, 382
MboII GAAGA 1 cut(s) 443
MfeI CAATTG 1 cut(s) 312
MhlI GDGCHC 3 cut(s) 20, 95, 325
MluCI AATT 3 cut(s) 312, 376, 436
MlyI GAGTC 1 cut(s) 90
MnlI CCTC 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 3 cut(s) 209, 218, 238
NdeII GATC 3 cut(s) 245, 285, 382
NmuCI GTSAC 1 cut(s) 82
NsbI TGCGCA 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 3 cut(s) 220, 367, 415
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 253
SatI GCNGC 3 cut(s) 219, 366, 414
Sau3AI GATC 3 cut(s) 245, 285, 382
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 3 cut(s) 20, 95, 325
SetI ASST 4 cut(s) 12, 137, 205, 336
SfaNI GCATC 2 cut(s) 46, 379
SmiMI CAYNNNNRTG 1 cut(s) 253
Sse9I AATT 3 cut(s) 312, 376, 436
SspI AATATT 1 cut(s) 193
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 72
TaqI TCGA 2 cut(s) 79, 284
TasI AATT 3 cut(s) 312, 376, 436
TfiI GAWTC 1 cut(s) 358
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 3 cut(s) 218, 365, 413
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 64, 366
TspRI CASTG 1 cut(s) 133
XapI RAATTY 1 cut(s) 436
XmnI GAANNNNTTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.