Rh7DG137000

Tim17/Tim22/Tim23/Pmp24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006145
Physical Location & Seq
Forward (+)
11606177 .. 11608389
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG137000.1

Sequence Viewer

Length: 588 bp
ATGTTGTACGGGGGTAGCAAGGAGGCATCTGCTTCGGTTAGCAAGGATGCTGAAGTAATGTTGAAGCTTGGGAGCACACCAGACAAGCGTGAGCAATATCGTTTGATGAGAGATGCAATGGAAAAACGGTTCATTCGAGTCACGCGGGGCTCAATAGTTGGTGGAGTGCGTCTTGGATTGTTTACTGCTACCTTTTATGGTTTACAAAATCTGCTTGCTGAGAAAAGGGGTGTGCAAGATGTTTTCAATATTGTGGGAGCTGGTTCAGCCACGGCTGCGACATTCGGGCTATTATTGCCAGGATCATTACAATGGCGTGCAAGAAATATGTTACTGGGTTCGATCCTTGGAGCAGTCATTGGTTTCCCAATTGGTAATACATTCTACCTGTTGCTTCTCTTACACGTCCTCAAACAATCCTATGCTGCTAACCTTTTGATACAATTTGTGGCAGGGTGGGCACACTTGAAGCTGGTGCAGATAGCAAATGAAGGGAATCCTGCTGCGCATCCTAATTCAGATCAAAGAGAAGCAAAGAGTGGTGTTGGTGCTGCCATTGAGAGGCTTGAAGAAAATTTGAATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

195

Amino Acids

21.12

Weight (kDa)

9.81

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 34 - 120 3.6e-07 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 507
AccII CGCG 1 cut(s) 145
AciI CCGC 1 cut(s) 145
AclWI GGATC 2 cut(s) 310, 337
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 561
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 5 cut(s) 64, 247, 469, 569, 580
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 1 cut(s) 298
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 3 cut(s) 67, 260, 472
AluI AGCT 3 cut(s) 67, 260, 472
Alw21I GWGCWC 1 cut(s) 77
AlwI GGATC 2 cut(s) 310, 337
ApeKI GCWGC 4 cut(s) 275, 425, 503, 551
ApoI RAATTY 1 cut(s) 574
AspLEI GCGC 1 cut(s) 508
BaeGI GKGCMC 1 cut(s) 463
BanII GRGCYC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 4 cut(s) 262, 412, 490, 538
BceAI ACGGC 1 cut(s) 288
BcgI CGANNNNNNTGC 2 cut(s) 15, 49
BciT130I CCWGG 1 cut(s) 300
BisI GCNGC 4 cut(s) 276, 426, 504, 552
BlsI GCNGC 4 cut(s) 277, 427, 505, 553
Bme1390I CCNGG 1 cut(s) 300
BmgBI CACGTC 1 cut(s) 406
BmrFI CCNGG 1 cut(s) 300
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 4 cut(s) 35, 37, 103, 517
BmuI ACTGGG 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 270, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 561
Bse1I ACTGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 270, 346
BseGI GGATG 2 cut(s) 52, 508
BseLI CCNNNNNNNGG 1 cut(s) 561
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 339
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 4 cut(s) 262, 412, 490, 538
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 561
Bsp1286I GDGCHC 3 cut(s) 77, 152, 463
Bsp143I GATC 3 cut(s) 302, 342, 520
BspACI CCGC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 145
BspPI GGATC 2 cut(s) 310, 337
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 2 cut(s) 270, 346
BssMI GATC 3 cut(s) 302, 342, 520
BssT1I CCWWGG 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 216, 318
BstDEI CTNAG 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 52, 508
BstFNI CGCG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 3 cut(s) 305, 345, 523
BstMBI GATC 3 cut(s) 302, 342, 520
BstMWI GCNNNNNNNGC 4 cut(s) 266, 275, 295, 458
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstSLI GKGCMC 1 cut(s) 463
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 4 cut(s) 262, 412, 490, 538
BtgI CCRYGG 1 cut(s) 270
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 2 cut(s) 52, 508
Cac8I GCNNGC 2 cut(s) 216, 318
CfoI GCGC 1 cut(s) 508
CseI GACGC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 7
CviJI RGCY 8 cut(s) 67, 150, 260, 269, 275, 289, 472, 565
CviKI_1 RGCY 8 cut(s) 67, 150, 260, 269, 275, 289, 472, 565
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 219
DpnI GATC 3 cut(s) 304, 344, 522
DpnII GATC 3 cut(s) 302, 342, 520
Eco130I CCWWGG 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 346
FaiI YATR 3 cut(s) 198, 329, 423
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 4 cut(s) 276, 426, 504, 552
FokI GGATG 2 cut(s) 59, 495
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 4 cut(s) 276, 426, 504, 552
FspI TGCGCA 1 cut(s) 507
GlaI GCGC 1 cut(s) 507
GluI GCNGC 4 cut(s) 276, 426, 504, 552
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 508
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 2 cut(s) 138, 496
Hpy166II GTNNAC 2 cut(s) 183, 203
Hpy188I TCNGA 1 cut(s) 520
Hpy8I GTNNAC 2 cut(s) 183, 203
HpyAV CCTTC 1 cut(s) 485
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 4 cut(s) 116, 235, 320, 478
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 275, 295, 458
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 405
HspAI GCGC 1 cut(s) 506
Kzo9I GATC 3 cut(s) 302, 342, 520
LmnI GCTCC 3 cut(s) 72, 257, 350
LpnPI CCDG 9 cut(s) 93, 246, 285, 312, 320, 401, 438, 458, 513
Lsp1109I GCAGC 4 cut(s) 262, 412, 490, 538
LweI GCATC 4 cut(s) 35, 37, 103, 517
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 2 cut(s) 139, 330
MalI GATC 3 cut(s) 304, 344, 522
MboI GATC 3 cut(s) 302, 342, 520
MboII GAAGA 1 cut(s) 581
MfeI CAATTG 1 cut(s) 369
MhlI GDGCHC 3 cut(s) 77, 152, 463
MluCI AATT 4 cut(s) 369, 443, 514, 574
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 3 cut(s) 16, 419, 555
MslI CAYNNNNRTG 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 300
MunI CAATTG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 4 cut(s) 266, 275, 295, 458
NdeII GATC 3 cut(s) 302, 342, 520
NmuCI GTSAC 1 cut(s) 139
NsbI TGCGCA 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PfeI GAWTC 1 cut(s) 496
PkrI GCNGC 4 cut(s) 277, 427, 505, 553
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 310
SatI GCNGC 4 cut(s) 276, 426, 504, 552
Sau3AI GATC 3 cut(s) 302, 342, 520
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 3 cut(s) 77, 152, 463
SetI ASST 7 cut(s) 69, 194, 262, 390, 408, 435, 474
SfaNI GCATC 4 cut(s) 35, 37, 103, 517
SmiMI CAYNNNNRTG 1 cut(s) 310
Sse9I AATT 4 cut(s) 369, 443, 514, 574
SsiI CCGC 1 cut(s) 145
SspI AATATT 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 1 cut(s) 346
TaaI ACNGT 1 cut(s) 129
TaiI ACGT 1 cut(s) 408
TaqI TCGA 2 cut(s) 136, 341
TasI AATT 4 cut(s) 369, 443, 514, 574
TfiI GAWTC 1 cut(s) 496
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 4 cut(s) 275, 425, 503, 551
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 121, 504
XapI RAATTY 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.