Tim17/Tim22/Tim23/Pmp24 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G63000 |
| fragaria_vesca | FvH4_5g05480 |
| malus_domestica | MD06G1172200.v1.1 MD14G1178100.v1.1 |
| prunus_persica | Prupe.5G171600_v2.0.a1 |
| pyrus_communis | pycom06g15340 pycom14g14860 |
| rosa_chinensis | RchiOBHm_Chr7g0193351 |
| rosa_laevigata | RLG00000004277 |
| rosa_multiflora | Rmu_sc0000596.1_g000077 Rmu_ssc0000092.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00262190 Rroxscaffold_7G00204750 |
| rosa_rugosa | Rorug06G0003000 Rorug06G0003100 Rorug07G0009100 |
| rosa_samantha | Rh6BG115600 Rh6BG116100 Rh6CG114700 Rh6DG103100 Rh6DG103500 Rh7AG134900 Rh7AG135300 Rh7BG135600 Rh7CG139000 Rh7DG137000 |
| rosa_wichuraiana | Rw7G011530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 376, 403 |
| AcsI | RAATTY | 1 cut(s) | 559 |
| AcuI | CTGAAG | 1 cut(s) | 222 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 193, 546 |
| AgsI | TTSAA | 6 cut(s) | 144, 214, 313, 454, 554, 565 |
| AjnI | CCWGG | 1 cut(s) | 364 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 263, 295 |
| AluBI | AGCT | 5 cut(s) | 14, 62, 217, 326, 457 |
| AluI | AGCT | 5 cut(s) | 14, 62, 217, 326, 457 |
| Alw21I | GWGCWC | 1 cut(s) | 227 |
| AlwI | GGATC | 2 cut(s) | 376, 403 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 89 |
| ApeKI | GCWGC | 2 cut(s) | 341, 536 |
| ApoI | RAATTY | 1 cut(s) | 559 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 278 |
| AsuII | TTCGAA | 1 cut(s) | 286 |
| BaeGI | GKGCMC | 1 cut(s) | 448 |
| Bbv12I | GWGCWC | 1 cut(s) | 227 |
| BbvI | GCAGC | 2 cut(s) | 328, 523 |
| BceAI | ACGGC | 1 cut(s) | 354 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 96, 130 |
| BciT130I | CCWGG | 1 cut(s) | 366 |
| BfaI | CTAG | 1 cut(s) | 59 |
| BisI | GCNGC | 2 cut(s) | 342, 537 |
| BlsI | GCNGC | 2 cut(s) | 343, 538 |
| Bme1390I | CCNGG | 1 cut(s) | 366 |
| BmrFI | CCNGG | 1 cut(s) | 366 |
| BmrI | ACTGGG | 2 cut(s) | 85, 410 |
| BmsI | GCATC | 3 cut(s) | 187, 253, 502 |
| BmuI | ACTGGG | 2 cut(s) | 85, 410 |
| Bpu14I | TTCGAA | 1 cut(s) | 286 |
| Bsa29I | ATCGAT | 1 cut(s) | 116 |
| BsaJI | CCNNGG | 2 cut(s) | 336, 412 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 263, 293 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 193, 546 |
| Bse1I | ACTGG | 2 cut(s) | 80, 405 |
| Bse3DI | GCAATG | 1 cut(s) | 273 |
| BseBI | CCWGG | 1 cut(s) | 366 |
| BseCI | ATCGAT | 1 cut(s) | 116 |
| BseDI | CCNNGG | 2 cut(s) | 336, 412 |
| BseGI | GGATG | 2 cut(s) | 202, 493 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 193, 546 |
| BseMI | GCAATG | 1 cut(s) | 273 |
| BseNI | ACTGG | 2 cut(s) | 80, 405 |
| BseSI | GKGCMC | 1 cut(s) | 448 |
| BseXI | GCAGC | 2 cut(s) | 328, 523 |
| BseYI | CCCAGC | 1 cut(s) | 14 |
| BsgI | GTGCAG | 1 cut(s) | 482 |
| BshVI | ATCGAT | 1 cut(s) | 116 |
| BsiHKAI | GWGCWC | 1 cut(s) | 227 |
| BsiSI | CCGG | 1 cut(s) | 96 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 193, 546 |
| Bsp119I | TTCGAA | 1 cut(s) | 286 |
| Bsp1286I | GDGCHC | 2 cut(s) | 227, 448 |
| Bsp143I | GATC | 3 cut(s) | 368, 408, 505 |
| BspDI | ATCGAT | 1 cut(s) | 116 |
| BspPI | GGATC | 2 cut(s) | 376, 403 |
| BspT104I | TTCGAA | 1 cut(s) | 286 |
| BsrDI | GCAATG | 1 cut(s) | 273 |
| BsrI | ACTGG | 2 cut(s) | 80, 405 |
| BssECI | CCNNGG | 2 cut(s) | 336, 412 |
| BssMI | GATC | 3 cut(s) | 368, 408, 505 |
| BssT1I | CCWWGG | 1 cut(s) | 412 |
| Bst2UI | CCWGG | 1 cut(s) | 366 |
| Bst4CI | ACNGT | 3 cut(s) | 70, 91, 279 |
| BstBI | TTCGAA | 1 cut(s) | 286 |
| BstC8I | GCNNGC | 1 cut(s) | 384 |
| BstDSI | CCRYGG | 1 cut(s) | 336 |
| BstF5I | GGATG | 2 cut(s) | 202, 493 |
| BstKTI | GATC | 3 cut(s) | 371, 411, 508 |
| BstMBI | GATC | 3 cut(s) | 368, 408, 505 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 92, 183, 332, 341, 361 |
| BstNI | CCWGG | 1 cut(s) | 366 |
| BstSCI | CCNGG | 1 cut(s) | 364 |
| BstSLI | GKGCMC | 1 cut(s) | 448 |
| BstV1I | GCAGC | 2 cut(s) | 328, 523 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 441 |
| Bsu15I | ATCGAT | 1 cut(s) | 116 |
| BsuTUI | ATCGAT | 1 cut(s) | 116 |
| BtgI | CCRYGG | 1 cut(s) | 336 |
| BtsCI | GGATG | 2 cut(s) | 202, 493 |
| Cac8I | GCNNGC | 1 cut(s) | 384 |
| CaiI | CAGNNNCTG | 1 cut(s) | 89 |
| ClaI | ATCGAT | 1 cut(s) | 116 |
| CviAII | CATG | 1 cut(s) | 239 |
| DpnI | GATC | 3 cut(s) | 370, 410, 507 |
| DpnII | GATC | 3 cut(s) | 368, 408, 505 |
| Eco130I | CCWWGG | 1 cut(s) | 412 |
| Eco57I | CTGAAG | 1 cut(s) | 222 |
| EcoRII | CCWGG | 1 cut(s) | 364 |
| EcoT14I | CCWWGG | 1 cut(s) | 412 |
| ErhI | CCWWGG | 1 cut(s) | 412 |
| FaeI | CATG | 1 cut(s) | 242 |
| FaiI | YATR | 3 cut(s) | 151, 240, 395 |
| FatI | CATG | 1 cut(s) | 238 |
| Fnu4HI | GCNGC | 2 cut(s) | 342, 537 |
| FokI | GGATG | 2 cut(s) | 209, 480 |
| Fsp4HI | GCNGC | 2 cut(s) | 342, 537 |
| FspBI | CTAG | 1 cut(s) | 59 |
| GluI | GCNGC | 2 cut(s) | 342, 537 |
| GsaI | CCCAGC | 1 cut(s) | 18 |
| HapII | CCGG | 1 cut(s) | 96 |
| Hin1II | CATG | 1 cut(s) | 242 |
| HincII | GTYRAC | 1 cut(s) | 73 |
| HindII | GTYRAC | 1 cut(s) | 73 |
| HindIII | AAGCTT | 1 cut(s) | 215 |
| HinfI | GANTC | 1 cut(s) | 481 |
| HpaII | CCGG | 1 cut(s) | 96 |
| Hpy166II | GTNNAC | 1 cut(s) | 73 |
| Hpy188I | TCNGA | 3 cut(s) | 28, 54, 505 |
| Hpy8I | GTNNAC | 1 cut(s) | 73 |
| HpyAV | CCTTC | 1 cut(s) | 470 |
| HpyCH4III | ACNGT | 3 cut(s) | 70, 91, 279 |
| HpyCH4IV | ACGT | 1 cut(s) | 138 |
| HpyCH4V | TGCA | 6 cut(s) | 107, 266, 301, 386, 463, 493 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 92, 183, 332, 341, 361 |
| HpySE526I | ACGT | 1 cut(s) | 138 |
| Hsp92II | CATG | 1 cut(s) | 242 |
| Kzo9I | GATC | 3 cut(s) | 368, 408, 505 |
| LmnI | GCTCC | 3 cut(s) | 222, 323, 416 |
| Lsp1109I | GCAGC | 2 cut(s) | 328, 523 |
| LweI | GCATC | 3 cut(s) | 187, 253, 502 |
| MaeI | CTAG | 1 cut(s) | 59 |
| MaeII | ACGT | 1 cut(s) | 138 |
| MaeIII | GTNAC | 1 cut(s) | 396 |
| MalI | GATC | 3 cut(s) | 370, 410, 507 |
| MboI | GATC | 3 cut(s) | 368, 408, 505 |
| MboII | GAAGA | 2 cut(s) | 41, 566 |
| MfeI | CAATTG | 1 cut(s) | 435 |
| MhlI | GDGCHC | 2 cut(s) | 227, 448 |
| MluCI | AATT | 4 cut(s) | 33, 435, 499, 559 |
| MnlI | CCTC | 2 cut(s) | 160, 540 |
| MroXI | GAANNNNTTC | 1 cut(s) | 278 |
| MseI | TTAA | 1 cut(s) | 111 |
| MslI | CAYNNNNRTG | 1 cut(s) | 376 |
| MspI | CCGG | 1 cut(s) | 96 |
| MspR9I | CCNGG | 1 cut(s) | 366 |
| MunI | CAATTG | 1 cut(s) | 435 |
| MvaI | CCWGG | 1 cut(s) | 366 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 92, 183, 332, 341, 361 |
| NdeII | GATC | 3 cut(s) | 368, 408, 505 |
| NlaIII | CATG | 1 cut(s) | 242 |
| NspV | TTCGAA | 1 cut(s) | 286 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 283 |
| PdmI | GAANNNNTTC | 1 cut(s) | 278 |
| PfeI | GAWTC | 1 cut(s) | 481 |
| PkrI | GCNGC | 2 cut(s) | 343, 538 |
| Psp6I | CCWGG | 1 cut(s) | 364 |
| PspFI | CCCAGC | 1 cut(s) | 14 |
| PspGI | CCWGG | 1 cut(s) | 364 |
| PstNI | CAGNNNCTG | 1 cut(s) | 89 |
| RseI | CAYNNNNRTG | 1 cut(s) | 376 |
| SaqAI | TTAA | 1 cut(s) | 111 |
| SatI | GCNGC | 2 cut(s) | 342, 537 |
| Sau3AI | GATC | 3 cut(s) | 368, 408, 505 |
| ScrFI | CCNGG | 1 cut(s) | 366 |
| SduI | GDGCHC | 2 cut(s) | 227, 448 |
| SetI | ASST | 6 cut(s) | 16, 64, 141, 219, 328, 459 |
| SfaNI | GCATC | 3 cut(s) | 187, 253, 502 |
| SfuI | TTCGAA | 1 cut(s) | 286 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 376 |
| Sse9I | AATT | 4 cut(s) | 33, 435, 499, 559 |
| SspI | AATATT | 1 cut(s) | 316 |
| SspMI | CTAG | 1 cut(s) | 59 |
| StyD4I | CCNGG | 1 cut(s) | 364 |
| StyI | CCWWGG | 1 cut(s) | 412 |
| TaaI | ACNGT | 3 cut(s) | 70, 91, 279 |
| TaiI | ACGT | 1 cut(s) | 141 |
| TaqI | TCGA | 3 cut(s) | 116, 286, 407 |
| TasI | AATT | 4 cut(s) | 33, 435, 499, 559 |
| TfiI | GAWTC | 1 cut(s) | 481 |
| Tru1I | TTAA | 1 cut(s) | 111 |
| Tru9I | TTAA | 1 cut(s) | 111 |
| TseI | GCWGC | 2 cut(s) | 341, 536 |
| TspDTI | ATGAA | 2 cut(s) | 271, 489 |
| XapI | RAATTY | 1 cut(s) | 559 |
| XmnI | GAANNNNTTC | 1 cut(s) | 278 |
| XspI | CTAG | 1 cut(s) | 59 |