Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003662

Physical Location & Seq

Genomic Coordinates Forward (+)

3584951 .. 3588123

Gene Structure 3173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G051200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTCGAAGACAGGTGAGGTCGTATGCGTTACCGGTGGAAGTGGGTGCATTGGATCATGGCTCGTCCGCCTCCTCCTCGACCGTAATTACACCGTCCATGCCACCGTCAAAGATCTCAAGGACGAGGGTGAGACGAAGCATCTAGAAGCCCTAGAAGGAGCAGCGACGCGTCTCCGTCTCTTCCAGATCGACCTCCTCGACTACAACTCCATCTTCGCCGCCATCAATGGCTGCTCCGGCGTCTTCCACCTCGCCTCTCCTTGCATCATCGATCAAGTCCAAGACCCCGAGAAGGAGCTTCTGGACCCGGCGATCAAAGGAGCGCTTAATGTTCTGACGGCAGCGAAGCAGGCTGGGGTCAGGCGAGTGGTGCTGACATCCTCCAACGCCGCCATCATTCCCAGCCCTTGCTGGCCGTCCGATAAGATCAAGGGTGAGGATTGCTGGACCGATATTGACTACTGCAAGCAGAAGGGATTGTGGTATTCATTGTCGAAAACTTTGGCGGAGAAAGCTGCGTGGGAATTTGCCAAGGAGAAGGGATTGGATGTGGTTGTGGTGAATCCTGGCACCGTGTTGGGCGATGTCATTTCGCCCAGGCTCAATTCTAGCATGGTGACGCTAGTGCGCCTTCTTGAGGGCTGCACTGAAACATACGAGAACATCTTTATGGGATCTGTGCATTTTAAAGATGTAGCTCTTGCACACATTTTAGTGTATGAGAACAAATCGGCCACTGGTAGACACCTGTGCGTTGAAGCTATATCACATTATGGTGACTTCGTGGCCAAGGTAGCTGAACTTTACCCTGAGTACAAGGTGCCGAGTTTGCCGAAGGATACCCAACCCGGGTTGCTGAGGGAAAAAAATGGAGCCAAGAAGCTAATGAACTTGGGTTTAGAATTCATTCCCATGGATCAAATCATCAAGGATGCTGTTGAGAGCCTAAAGAGCAAGGGATTTATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

324

Amino Acids

35.36

Weight (kDa)

6.02

Isoelectric Point (pI)

25.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58490
fragaria_vesca	FvH4_3g39460
malus_domestica	MD11G1064000.v1.1 MD11G1064600.v1.1 MD11G1064700.v1.1
prunus_persica	Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.I003000_v2.0.a1
pyrus_communis	pycom11g05410 pycom11g05430 pycom11g05470 pycom11g05480
rosa_chinensis	RchiOBHm_Chr5g0071191
rosa_laevigata	RLG00000036190
rosa_multiflora	Rmu_co8412031.1_g000001 Rmu_sc0000962.1_g000032 Rmu_sc0003638.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009940
rosa_rugosa	Rorug05G0410400
rosa_samantha	Rh3DG226600 Rh3DG309400 Rh5AG466400 Rh5BG484900 Rh5CG509300 Rh5DG496200
rosa_wichuraiana	Rw4G017980 Rw5G043320 Rw6G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	569, 820
AccI	GTMKAC	1 cut(s)	742
AccII	CGCG	1 cut(s)	169
AciI	CCGC	4 cut(s)	67, 219, 390, 506
AclWI	GGATC	3 cut(s)	61, 682, 924
AcoI	YGGCCR	3 cut(s)	413, 732, 786
AcsI	RAATTY	2 cut(s)	524, 902
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	815
AfeI	AGCGCT	1 cut(s)	324
AfiI	CCNNNNNNNGG	3 cut(s)	292, 637, 849
AflIII	ACRYGT	1 cut(s)	167
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	758
AjnI	CCWGG	2 cut(s)	565, 596
AluBI	AGCT	6 cut(s)	298, 515, 698, 761, 797, 883
AluI	AGCT	6 cut(s)	298, 515, 698, 761, 797, 883
Alw26I	GTCTC	3 cut(s)	125, 176, 182
AlwI	GGATC	3 cut(s)	61, 682, 924
Ama87I	CYCGRG	2 cut(s)	287, 848
Aor51HI	AGCGCT	1 cut(s)	324
AoxI	GGCC	3 cut(s)	413, 732, 786
ApeKI	GCWGC	5 cut(s)	161, 231, 341, 515, 642
ApoI	RAATTY	2 cut(s)	524, 902
AsiGI	ACCGGT	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	906
AspLEI	GCGC	2 cut(s)	325, 630
AspS9I	GGNCC	2 cut(s)	304, 447
AsuC2I	CCSGG	3 cut(s)	308, 849, 850
AsuHPI	GGTGA	6 cut(s)	26, 140, 446, 571, 628, 788
AvaI	CYCGRG	2 cut(s)	287, 848
AvaII	GGWCC	2 cut(s)	304, 447
BalI	TGGCCA	1 cut(s)	788
BanI	GGYRCC	2 cut(s)	569, 820
BbsI	GAAGAC	2 cut(s)	14, 235
BbvCI	CCTCAGC	1 cut(s)	857
BbvI	GCAGC	5 cut(s)	173, 218, 353, 502, 629
BccI	CCATC	3 cut(s)	218, 230, 401
BceAI	ACGGC	2 cut(s)	354, 400
BciT130I	CCWGG	2 cut(s)	567, 598
BciVI	GTATCC	1 cut(s)	832
BcnI	CCSGG	3 cut(s)	308, 849, 850
BcoDI	GTCTC	3 cut(s)	125, 176, 182
BfaI	CTAG	4 cut(s)	143, 152, 609, 623
BfoI	RGCGCY	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	832
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	7 cut(s)	162, 219, 232, 342, 390, 516, 643
BlsI	GCNGC	7 cut(s)	163, 220, 233, 343, 391, 517, 644
Bme1390I	CCNGG	5 cut(s)	308, 567, 598, 849, 850
Bme18I	GGWCC	2 cut(s)	304, 447
BmeT110I	CYCGRG	2 cut(s)	287, 848
BmgT120I	GGNCC	2 cut(s)	304, 447
BmiI	GGNNCC	4 cut(s)	306, 571, 822, 874
BmrFI	CCNGG	5 cut(s)	308, 567, 598, 849, 850
BmsI	GCATC	3 cut(s)	148, 273, 922
BpiI	GAAGAC	2 cut(s)	14, 235
Bpu10I	CCTNAGC	1 cut(s)	857
BpuEI	CTTGAG	2 cut(s)	101, 656
BpuMI	CCSGG	3 cut(s)	308, 849, 850
Bsa29I	ATCGAT	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	5 cut(s)	531, 596, 789, 848, 912
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 637, 849
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	742
BseBI	CCWGG	2 cut(s)	567, 598
BseCI	ATCGAT	1 cut(s)	270
BseDI	CCNNGG	5 cut(s)	531, 596, 789, 848, 912
BseGI	GGATG	3 cut(s)	377, 553, 937
BseLI	CCNNNNNNNGG	3 cut(s)	292, 637, 849
BseMII	CTCAG	2 cut(s)	801, 848
BseNI	ACTGG	1 cut(s)	742
BseRI	GAGGAG	3 cut(s)	62, 65, 185
BseXI	GCAGC	5 cut(s)	173, 218, 353, 502, 629
BseYI	CCCAGC	2 cut(s)	353, 401
BsgI	GTGCAG	1 cut(s)	628
Bsh1236I	CGCG	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	415, 734, 788
BshNI	GGYRCC	2 cut(s)	569, 820
BshTI	ACCGGT	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	82
BsiHKCI	CYCGRG	2 cut(s)	287, 848
BsiSI	CCGG	4 cut(s)	33, 237, 308, 849
BslI	CCNNNNNNNGG	3 cut(s)	292, 637, 849
BsmAI	GTCTC	3 cut(s)	125, 176, 182
BsmBI	CGTCTC	3 cut(s)	125, 176, 182
BsnI	GGCC	3 cut(s)	415, 734, 788
BsoBI	CYCGRG	2 cut(s)	287, 848
Bsp143I	GATC	8 cut(s)	53, 112, 186, 271, 312, 426, 674, 916
Bsp19I	CCATGG	1 cut(s)	912
BspACI	CCGC	4 cut(s)	67, 219, 390, 506
BspANI	GGCC	3 cut(s)	415, 734, 788
BspCNI	CTCAG	2 cut(s)	802, 849
BspDI	ATCGAT	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	169
BspLI	GGNNCC	4 cut(s)	306, 571, 822, 874
BspPI	GGATC	3 cut(s)	61, 682, 924
BspT107I	GGYRCC	2 cut(s)	569, 820
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	742
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	5 cut(s)	531, 596, 789, 848, 912
BssMI	GATC	8 cut(s)	53, 112, 186, 271, 312, 426, 674, 916
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	3 cut(s)	531, 789, 912
Bst2UI	CCWGG	2 cut(s)	567, 598
Bst4CI	ACNGT	4 cut(s)	83, 94, 106, 574
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	3 cut(s)	351, 413, 467
BstDEI	CTNAG	2 cut(s)	810, 857
BstDSI	CCRYGG	1 cut(s)	912
BstENI	CCTNNNNNAGG	1 cut(s)	635
BstF5I	GGATG	3 cut(s)	377, 553, 937
BstFNI	CGCG	1 cut(s)	169
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	2 cut(s)	325, 630
BstKTI	GATC	8 cut(s)	56, 115, 189, 274, 315, 429, 677, 919
BstMAI	GTCTC	3 cut(s)	125, 176, 182
BstMBI	GATC	8 cut(s)	53, 112, 186, 271, 312, 426, 674, 916
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	7 cut(s)	237, 350, 370, 512, 794, 829, 951
BstNI	CCWGG	2 cut(s)	567, 598
BstSCI	CCNGG	5 cut(s)	306, 565, 596, 847, 848
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	5 cut(s)	173, 218, 353, 502, 629
BstV2I	GAAGAC	2 cut(s)	14, 235
BstX2I	RGATCY	2 cut(s)	112, 674
BstYI	RGATCY	2 cut(s)	112, 674
Bsu15I	ATCGAT	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	3 cut(s)	415, 734, 788
BsuTUI	ATCGAT	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	912
BtgZI	GCGATG	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	377, 553, 937
BtsIMutI	CAGTG	2 cut(s)	645, 735
Cac8I	GCNNGC	3 cut(s)	351, 413, 467
CfoI	GCGC	2 cut(s)	325, 630
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	304, 447
Cfr9I	CCCGGG	1 cut(s)	848
ClaI	ATCGAT	1 cut(s)	270
CseI	GACGC	4 cut(s)	158, 175, 229, 628
Csp6I	GTAC	1 cut(s)	814
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	4 cut(s)	57, 98, 613, 913
CviQI	GTAC	1 cut(s)	814
DdeI	CTNAG	2 cut(s)	810, 857
DpnI	GATC	8 cut(s)	55, 114, 188, 273, 314, 428, 676, 918
DpnII	GATC	8 cut(s)	53, 112, 186, 271, 312, 426, 674, 916
DraI	TTTAAA	1 cut(s)	688
EaeI	YGGCCR	3 cut(s)	413, 732, 786
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	2 cut(s)	56, 521
Eco130I	CCWWGG	3 cut(s)	531, 789, 912
Eco47I	GGWCC	2 cut(s)	304, 447
Eco47III	AGCGCT	1 cut(s)	324
Eco88I	CYCGRG	2 cut(s)	287, 848
EcoNI	CCTNNNNNAGG	1 cut(s)	635
EcoRI	GAATTC	1 cut(s)	902
EcoRII	CCWGG	2 cut(s)	565, 596
EcoT14I	CCWWGG	3 cut(s)	531, 789, 912
ErhI	CCWWGG	3 cut(s)	531, 789, 912
Esp3I	CGTCTC	3 cut(s)	125, 176, 182
FaeI	CATG	4 cut(s)	60, 101, 616, 916
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	4 cut(s)	56, 97, 612, 912
FblI	GTMKAC	1 cut(s)	742
Fnu4HI	GCNGC	7 cut(s)	162, 219, 232, 342, 390, 516, 643
FokI	GGATG	3 cut(s)	364, 560, 944
Fsp4HI	GCNGC	7 cut(s)	162, 219, 232, 342, 390, 516, 643
FspBI	CTAG	4 cut(s)	143, 152, 609, 623
GlaI	GCGC	2 cut(s)	324, 629
GluI	GCNGC	7 cut(s)	162, 219, 232, 342, 390, 516, 643
GsaI	CCCAGC	2 cut(s)	357, 405
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	415, 734, 788
HapII	CCGG	4 cut(s)	33, 237, 308, 849
HgaI	GACGC	4 cut(s)	158, 175, 229, 628
HhaI	GCGC	2 cut(s)	325, 630
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	4 cut(s)	60, 101, 616, 916
Hin6I	GCGC	2 cut(s)	323, 628
HinP1I	GCGC	2 cut(s)	323, 628
HinfI	GANTC	1 cut(s)	562
HpaII	CCGG	4 cut(s)	33, 237, 308, 849
HphI	GGTGA	6 cut(s)	26, 140, 446, 571, 628, 788
Hpy166II	GTNNAC	1 cut(s)	743
Hpy188I	TCNGA	2 cut(s)	336, 421
Hpy188III	TCNNGA	4 cut(s)	143, 184, 302, 635
Hpy8I	GTNNAC	1 cut(s)	743
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	6 cut(s)	149, 286, 466, 532, 641, 829
HpyCH4III	ACNGT	4 cut(s)	83, 94, 106, 574
HpyCH4V	TGCA	6 cut(s)	48, 264, 465, 645, 682, 704
HpyF10VI	GCNNNNNNNGC	7 cut(s)	237, 350, 370, 512, 794, 829, 951
HpyF3I	CTNAG	2 cut(s)	810, 857
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	60, 101, 616, 916
HspAI	GCGC	2 cut(s)	323, 628
Kzo9I	GATC	8 cut(s)	53, 112, 186, 271, 312, 426, 674, 916
LmnI	GCTCC	5 cut(s)	158, 239, 295, 320, 872
Lsp1109I	GCAGC	5 cut(s)	173, 218, 353, 502, 629
LweI	GCATC	3 cut(s)	148, 273, 922
MaeI	CTAG	4 cut(s)	143, 152, 609, 623
MaeIII	GTNAC	3 cut(s)	28, 616, 776
MalI	GATC	8 cut(s)	55, 114, 188, 273, 314, 428, 676, 918
MboI	GATC	8 cut(s)	53, 112, 186, 271, 312, 426, 674, 916
MboII	GAAGA	4 cut(s)	19, 172, 205, 235
MflI	RGATCY	2 cut(s)	112, 674
MlsI	TGGCCA	1 cut(s)	788
MluCI	AATT	4 cut(s)	85, 524, 604, 902
MluI	ACGCGT	1 cut(s)	167
MluNI	TGGCCA	1 cut(s)	788
MmeI	TCCRAC	1 cut(s)	408
Mox20I	TGGCCA	1 cut(s)	788
MroXI	GAANNNNTTC	1 cut(s)	906
MscI	TGGCCA	1 cut(s)	788
MseI	TTAA	2 cut(s)	327, 687
MslI	CAYNNNNRTG	4 cut(s)	668, 713, 774, 911
Msp20I	TGGCCA	1 cut(s)	788
MspI	CCGG	4 cut(s)	33, 237, 308, 849
MspR9I	CCNGG	5 cut(s)	308, 567, 598, 849, 850
MvaI	CCWGG	2 cut(s)	567, 598
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	7 cut(s)	237, 350, 370, 512, 794, 829, 951
NciI	CCSGG	3 cut(s)	308, 849, 850
NcoI	CCATGG	1 cut(s)	912
NdeII	GATC	8 cut(s)	53, 112, 186, 271, 312, 426, 674, 916
NlaIII	CATG	4 cut(s)	60, 101, 616, 916
NlaIV	GGNNCC	4 cut(s)	306, 571, 822, 874
NmeAIII	GCCGAG	1 cut(s)	849
NmuCI	GTSAC	2 cut(s)	616, 776
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	906
PfeI	GAWTC	1 cut(s)	562
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	7 cut(s)	163, 220, 233, 343, 391, 517, 644
Psp6I	CCWGG	2 cut(s)	565, 596
PspFI	CCCAGC	2 cut(s)	353, 401
PspGI	CCWGG	2 cut(s)	565, 596
PspN4I	GGNNCC	4 cut(s)	306, 571, 822, 874
PspPI	GGNCC	2 cut(s)	304, 447
PsuI	RGATCY	2 cut(s)	112, 674
RsaI	GTAC	1 cut(s)	815
RsaNI	GTAC	1 cut(s)	814
RseI	CAYNNNNRTG	4 cut(s)	668, 713, 774, 911
SaqAI	TTAA	2 cut(s)	327, 687
SatI	GCNGC	7 cut(s)	162, 219, 232, 342, 390, 516, 643
Sau3AI	GATC	8 cut(s)	53, 112, 186, 271, 312, 426, 674, 916
Sau96I	GGNCC	2 cut(s)	304, 447
ScrFI	CCNGG	5 cut(s)	308, 567, 598, 849, 850
SfaNI	GCATC	3 cut(s)	148, 273, 922
SinI	GGWCC	2 cut(s)	304, 447
SmaI	CCCGGG	1 cut(s)	850
SmiMI	CAYNNNNRTG	4 cut(s)	668, 713, 774, 911
SmlI	CTYRAG	2 cut(s)	116, 635
SmoI	CTYRAG	2 cut(s)	116, 635
Sse9I	AATT	4 cut(s)	85, 524, 604, 902
SsiI	CCGC	4 cut(s)	67, 219, 390, 506
SspMI	CTAG	4 cut(s)	143, 152, 609, 623
StyD4I	CCNGG	5 cut(s)	306, 565, 596, 847, 848
StyI	CCWWGG	3 cut(s)	531, 789, 912
TaaI	ACNGT	4 cut(s)	83, 94, 106, 574
TaqI	TCGA	6 cut(s)	5, 78, 189, 198, 270, 494
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	4 cut(s)	85, 524, 604, 902
TatI	WGTACW	1 cut(s)	813
TauI	GCSGC	2 cut(s)	221, 392
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	2 cut(s)	327, 687
Tru9I	TTAA	2 cut(s)	327, 687
TscAI	CASTG	2 cut(s)	652, 742
TseFI	GTSAC	2 cut(s)	616, 776
TseI	GCWGC	5 cut(s)	161, 231, 341, 515, 642
Tsp45I	GTSAC	2 cut(s)	616, 776
TspDTI	ATGAA	4 cut(s)	477, 895, 902, 957
TspGWI	ACGGA	1 cut(s)	164
TspMI	CCCGGG	1 cut(s)	848
TspRI	CASTG	2 cut(s)	652, 742
VpaK11BI	GGWCC	2 cut(s)	304, 447
XagI	CCTNNNNNAGG	1 cut(s)	635
XapI	RAATTY	2 cut(s)	524, 902
XbaI	TCTAGA	1 cut(s)	142
XmaI	CCCGGG	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	742
XmnI	GAANNNNTTC	1 cut(s)	906
XspI	CTAG	4 cut(s)	143, 152, 609, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.