Rh5CG509300

cinnamoyl-CoA reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003662
Physical Location & Seq
Reverse (-)
71168516 .. 71171565
3050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG509300.1

Sequence Viewer

Length: 744 bp
ATGTCGAAGCAGGGTGAGGTCGTATGCGTCACCGGTGGAAGCGGCTGCATCGGATCATGGGTGGTCCGCCTCCTCCTCGACCGCGGCTACACCGTCCACGCCACCGTCAAAGACCTCAAGGACGACGGCGAGACGAAGCATCTAGAAGCCCTAGAAGGAGCCCAAACGCGCCTCCGCCTCTTCCAGATCGACCTCCTCGACTACGATTCCATCTCCGCCGCAGTCCACGGCTGCTCCGGCGTCTTCCACCTCGCCTCTCCTTGCATCGTTGACCAAGTCCATGACCCCCAGAAGGAGCTGTTGGACCCGGCGATTAAAGGAACGCTGAATGTTCTAACGGCGGCTAAGCAGGCCGGCGTGAAGCGCGTGGTGCTCACGTCCTCCGTCTCGGCCATCACTCCCAGCCCTACTTGGCCCGCCGATGTCGTCAAGAGAGAGGATTGCTGGACTGATGTTGAGTACTGCAAGCAGAAAGGACTGTGGTATCCTTTATCGAAAACTCTGGCGGAGAAAGCTGCGTGGGAATTTGCCGAGGAGAAGGGGTTGGATGTGGTTGTGGTGAATCCGGGGACGGTGATGGGTGATGTTATATCGCCGAGGCTCAATGCTAGCATGTTGATGCTCGTACGCCTTCTTGAAGGTACTGTTTTGTGCACATTTTATGTAAAAGAATATTATCTGGTTTGTACCTTGAAGTCAATTGTGATGGTTGAACTAGTGTTATCAGGAAAAAGGTCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

247

Amino Acids

27.05

Weight (kDa)

5.98

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 7 - 131 1.1e-13 NmrA-like family
Epimerase PF01370 8 - 196 7.5e-26 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 8 - 135 7.7e-10 Polysaccharide biosynthesis protein
KR PF08659 8 - 135 5.5e-09 KR domain
3Beta_HSD PF01073 10 - 173 4.9e-20 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 128 4.8e-18 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 205 7.3e-10 Male sterility protein
NAD_binding_10 PF13460 12 - 191 4.2e-15 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 84, 169, 366
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 1 cut(s) 524
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 4 cut(s) 461, 627, 643, 688
AfiI CCNNNNNNNGG 1 cut(s) 292
AgeI ACCGGT 1 cut(s) 32
AgsI TTSAA 3 cut(s) 638, 694, 713
AhlI ACTAGT 1 cut(s) 715
AjiI CACGTC 1 cut(s) 378
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 2 cut(s) 298, 515
AluI AGCT 2 cut(s) 298, 515
Alw21I GWGCWC 2 cut(s) 375, 656
Alw26I GTCTC 2 cut(s) 125, 391
Alw44I GTGCAC 1 cut(s) 652
AlwI GGATC 1 cut(s) 61
AoxI GGCC 3 cut(s) 351, 390, 413
ApaLI GTGCAC 1 cut(s) 652
ApeKI GCWGC 3 cut(s) 45, 231, 515
ApoI RAATTY 1 cut(s) 524
AsiGI ACCGGT 1 cut(s) 32
AspLEI GCGC 2 cut(s) 171, 366
AspS9I GGNCC 3 cut(s) 64, 304, 414
AsuC2I CCSGG 2 cut(s) 308, 567
AsuHPI GGTGA 5 cut(s) 22, 26, 571, 586, 593
AsuNHI GCTAGC 1 cut(s) 608
AvaII GGWCC 2 cut(s) 64, 304
BaeGI GKGCMC 1 cut(s) 656
BaeI ACNNNNGTAYC 2 cut(s) 467, 500
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 2 cut(s) 375, 656
BbvI GCAGC 3 cut(s) 32, 218, 502
BccI CCATC 4 cut(s) 218, 401, 571, 700
BceAI ACGGC 3 cut(s) 142, 244, 354
BciVI GTATCC 1 cut(s) 495
BcnI CCSGG 2 cut(s) 308, 567
BcoDI GTCTC 2 cut(s) 125, 391
BcuI ACTAGT 1 cut(s) 715
BfaI CTAG 4 cut(s) 143, 152, 609, 716
BfuI GTATCC 1 cut(s) 495
BisI GCNGC 7 cut(s) 43, 46, 85, 219, 232, 342, 516
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 7 cut(s) 44, 47, 86, 220, 233, 343, 517
BmcAI AGTACT 1 cut(s) 461
Bme1390I CCNGG 2 cut(s) 308, 567
Bme18I GGWCC 2 cut(s) 64, 304
BmgBI CACGTC 1 cut(s) 378
BmgT120I GGNCC 3 cut(s) 64, 304, 414
BmiI GGNNCC 2 cut(s) 160, 306
BmrFI CCNGG 2 cut(s) 308, 567
BmsI GCATC 4 cut(s) 57, 148, 273, 609
BmtI GCTAGC 1 cut(s) 612
BpiI GAAGAC 1 cut(s) 235
Bpu1102I GCTNAGC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 308, 567
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 5 cut(s) 82, 226, 531, 566, 596
BsaWI WCCGGW 1 cut(s) 32
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 527, 557
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse118I RCCGGY 2 cut(s) 32, 353
BseDI CCNNGG 5 cut(s) 82, 226, 531, 566, 596
BseGI GGATG 1 cut(s) 553
BseLI CCNNNNNNNGG 1 cut(s) 292
BseRI GAGGAG 4 cut(s) 62, 65, 185, 548
BseSI GKGCMC 1 cut(s) 656
BseXI GCAGC 3 cut(s) 32, 218, 502
BseYI CCCAGC 1 cut(s) 401
Bsh1236I CGCG 3 cut(s) 84, 169, 366
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 353, 392, 415
BshTI ACCGGT 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 2 cut(s) 375, 656
BsiSI CCGG 5 cut(s) 33, 237, 308, 354, 566
BsiWI CGTACG 1 cut(s) 625
BslFI GGGAC 1 cut(s) 583
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 2 cut(s) 125, 391
BsmBI CGTCTC 2 cut(s) 125, 391
BsmFI GGGAC 1 cut(s) 583
BsnI GGCC 3 cut(s) 353, 392, 415
Bsp1286I GDGCHC 3 cut(s) 163, 375, 656
Bsp143I GATC 2 cut(s) 53, 186
Bsp1720I GCTNAGC 1 cut(s) 345
BspANI GGCC 3 cut(s) 353, 392, 415
BspFNI CGCG 3 cut(s) 84, 169, 366
BspLI GGNNCC 2 cut(s) 160, 306
BspOI GCTAGC 1 cut(s) 612
BspPI GGATC 1 cut(s) 61
BsrFI RCCGGY 2 cut(s) 32, 353
BssAI RCCGGY 2 cut(s) 32, 353
BssECI CCNNGG 5 cut(s) 82, 226, 531, 566, 596
BssMI GATC 2 cut(s) 53, 186
BssNI GRCGYC 1 cut(s) 240
Bst4CI ACNGT 5 cut(s) 94, 106, 480, 574, 646
Bst6I CTCTTC 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 240
BstC8I GCNNGC 5 cut(s) 351, 355, 417, 467, 610
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 2 cut(s) 82, 226
BstF5I GGATG 1 cut(s) 553
BstFNI CGCG 3 cut(s) 84, 169, 366
BstHHI GCGC 2 cut(s) 171, 366
BstKTI GATC 2 cut(s) 56, 189
BstMAI GTCTC 2 cut(s) 125, 391
BstMBI GATC 2 cut(s) 53, 186
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 5 cut(s) 237, 350, 363, 370, 512
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 2 cut(s) 306, 565
BstSLI GKGCMC 1 cut(s) 656
BstUI CGCG 3 cut(s) 84, 169, 366
BstV1I GCAGC 3 cut(s) 32, 218, 502
BstV2I GAAGAC 1 cut(s) 235
BsuI GTATCC 1 cut(s) 495
BsuRI GGCC 3 cut(s) 353, 392, 415
BtgI CCRYGG 2 cut(s) 82, 226
BtrI CACGTC 1 cut(s) 378
BtsCI GGATG 1 cut(s) 553
Cac8I GCNNGC 5 cut(s) 351, 355, 417, 467, 610
CfoI GCGC 2 cut(s) 171, 366
Cfr10I RCCGGY 2 cut(s) 32, 353
Cfr13I GGNCC 3 cut(s) 64, 304, 414
Cfr42I CCGCGG 1 cut(s) 85
CseI GACGC 2 cut(s) 16, 229
Csp6I GTAC 4 cut(s) 460, 626, 642, 687
CspAI ACCGGT 1 cut(s) 32
CviAII CATG 3 cut(s) 57, 281, 613
CviQI GTAC 4 cut(s) 460, 626, 642, 687
DdeI CTNAG 1 cut(s) 345
DpnI GATC 2 cut(s) 55, 188
DpnII GATC 2 cut(s) 53, 186
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
EciI GGCGGA 4 cut(s) 56, 164, 205, 521
Eco24I GRGCYC 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 64, 304
EcoT38I GRGCYC 1 cut(s) 163
Esp3I CGTCTC 2 cut(s) 125, 391
FaeI CATG 3 cut(s) 60, 284, 616
FaiI YATR 7 cut(s) 25, 58, 282, 590, 614, 663, 739
FaqI GGGAC 1 cut(s) 583
FatI CATG 3 cut(s) 56, 280, 612
FauI CCCGC 1 cut(s) 424
Fnu4HI GCNGC 7 cut(s) 43, 46, 85, 219, 232, 342, 516
FokI GGATG 1 cut(s) 560
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 7 cut(s) 43, 46, 85, 219, 232, 342, 516
FspBI CTAG 4 cut(s) 143, 152, 609, 716
GlaI GCGC 2 cut(s) 170, 365
GluI GCNGC 7 cut(s) 43, 46, 85, 219, 232, 342, 516
GsaI CCCAGC 1 cut(s) 405
HaeIII GGCC 3 cut(s) 353, 392, 415
HapII CCGG 5 cut(s) 33, 237, 308, 354, 566
HgaI GACGC 2 cut(s) 16, 229
HhaI GCGC 2 cut(s) 171, 366
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 3 cut(s) 60, 284, 616
Hin6I GCGC 2 cut(s) 169, 364
HinP1I GCGC 2 cut(s) 169, 364
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 206, 562
HpaII CCGG 5 cut(s) 33, 237, 308, 354, 566
HphI GGTGA 5 cut(s) 22, 26, 571, 586, 593
Hpy166II GTNNAC 4 cut(s) 97, 226, 271, 654
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 5 cut(s) 143, 184, 430, 635, 726
Hpy8I GTNNAC 4 cut(s) 97, 226, 271, 654
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 5 cut(s) 149, 286, 532, 632, 641
HpyCH4III ACNGT 5 cut(s) 94, 106, 480, 574, 646
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 4 cut(s) 48, 264, 465, 654
HpyF10VI GCNNNNNNNGC 5 cut(s) 237, 350, 363, 370, 512
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 377
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 3 cut(s) 60, 284, 616
HspAI GCGC 2 cut(s) 169, 364
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
KspI CCGCGG 1 cut(s) 85
Kzo9I GATC 2 cut(s) 53, 186
LmnI GCTCC 3 cut(s) 158, 239, 295
Lsp1109I GCAGC 3 cut(s) 32, 218, 502
LweI GCATC 4 cut(s) 57, 148, 273, 609
MaeI CTAG 4 cut(s) 143, 152, 609, 716
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 55, 188
MboI GATC 2 cut(s) 53, 186
MboII GAAGA 2 cut(s) 172, 235
MfeI CAATTG 1 cut(s) 699
MhlI GDGCHC 3 cut(s) 163, 375, 656
MluCI AATT 2 cut(s) 524, 699
MmeI TCCRAC 2 cut(s) 282, 525
MroNI GCCGGC 1 cut(s) 353
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 5 cut(s) 33, 237, 308, 354, 566
MspR9I CCNGG 2 cut(s) 308, 567
MunI CAATTG 1 cut(s) 699
MvnI CGCG 3 cut(s) 84, 169, 366
MwoI GCNNNNNNNGC 5 cut(s) 237, 350, 363, 370, 512
NaeI GCCGGC 1 cut(s) 355
NciI CCSGG 2 cut(s) 308, 567
NdeII GATC 2 cut(s) 53, 186
NgoMIV GCCGGC 1 cut(s) 353
NheI GCTAGC 1 cut(s) 608
NlaIII CATG 3 cut(s) 60, 284, 616
NlaIV GGNNCC 2 cut(s) 160, 306
NmeAIII GCCGAG 3 cut(s) 368, 556, 621
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 1 cut(s) 616
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PdiI GCCGGC 1 cut(s) 355
PfeI GAWTC 2 cut(s) 206, 562
Pfl23II CGTACG 1 cut(s) 625
PflFI GACNNNGTC 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 32
PkrI GCNGC 7 cut(s) 44, 47, 86, 220, 233, 343, 517
PspFI CCCAGC 1 cut(s) 401
PspLI CGTACG 1 cut(s) 625
PspN4I GGNNCC 2 cut(s) 160, 306
PspPI GGNCC 3 cut(s) 64, 304, 414
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 4 cut(s) 461, 627, 643, 688
RsaNI GTAC 4 cut(s) 460, 626, 642, 687
RseI CAYNNNNRTG 1 cut(s) 617
SacII CCGCGG 1 cut(s) 85
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 7 cut(s) 43, 46, 85, 219, 232, 342, 516
Sau3AI GATC 2 cut(s) 53, 186
Sau96I GGNCC 3 cut(s) 64, 304, 414
ScaI AGTACT 1 cut(s) 461
ScrFI CCNGG 2 cut(s) 308, 567
SduI GDGCHC 3 cut(s) 163, 375, 656
SfaNI GCATC 4 cut(s) 57, 148, 273, 609
Sfr303I CCGCGG 1 cut(s) 85
SgrAI CRCCGGYG 1 cut(s) 32
SgrBI CCGCGG 1 cut(s) 85
SinI GGWCC 2 cut(s) 64, 304
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 715
Sse9I AATT 2 cut(s) 524, 699
SspI AATATT 1 cut(s) 674
SspMI CTAG 4 cut(s) 143, 152, 609, 716
StyD4I CCNGG 2 cut(s) 306, 565
TaaI ACNGT 5 cut(s) 94, 106, 480, 574, 646
TaiI ACGT 1 cut(s) 380
TaqI TCGA 5 cut(s) 5, 78, 189, 198, 494
TasI AATT 2 cut(s) 524, 699
TatI WGTACW 1 cut(s) 459
TauI GCSGC 4 cut(s) 45, 87, 221, 344
TfiI GAWTC 2 cut(s) 206, 562
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 3 cut(s) 45, 231, 515
Tsp45I GTSAC 1 cut(s) 28
TspGWI ACGGA 1 cut(s) 373
Tth111I GACNNNGTC 1 cut(s) 275
VneI GTGCAC 1 cut(s) 652
VpaK11BI GGWCC 2 cut(s) 64, 304
XapI RAATTY 1 cut(s) 524
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 1 cut(s) 616
XspI CTAG 4 cut(s) 143, 152, 609, 716
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.