Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

scaffold_203

Orthogroup ID

OG0003662

Physical Location & Seq

Genomic Coordinates Forward (+)

16 .. 2759

Gene Structure 2744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.I003000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

CTGTTCAGTCTGAAACGTCGTCGTGTCGTTTTTGTTGCAGATGACGAGGGTGAGACGAAGCATCTAGAAGCCCTAGAAGGAGCATCGACGCGTCTCCGTCTCTTCCAGATCGACCTCCTCGACTACAACTCCATCTTCGCCGCCATCAATGGCTGCTCCGGCGTCTTCCACCTCGCCTCTCCTTGCACCGTCGATCAAGTCCAAGACCCCGAGAAGGAGCTTCTGGACCCGGCGATCAAAGGAACGCTTAATGTTCTGACGGCAGCGAAGCAGGCTGGGGTCATTCGAGTGGTGCTGACATCCTCCGTCTCCGCCATCACTCCCAGCCCTCGCTGGCCGTCCGATAAGATCAAGGGTGAGGATTGCTGGACCGACATTGACTACTGCACGCAGAAGGGATTGTGGTATCCATTGTCGAAAACTTTGGCAGAGAAAGCTGCGTGGGAATTTGCCAAGGAGAAGGGATTGGATGTGGTTGTGGTGAATCCTGGCACCGTGATGGGCGATGTCATTTCGCCCAGGCTCAATGGTAGCATGGTGATGCTAGTGCGCCTTCTTGAGGGCTGCACTGAAACATACGAGAACTTCTTTATGGGATCTGTGCATTTTAAAGATGTAGCTCTTGCACACATTTTAGTGTATGAGAACAAATCGGCCACTGGTAGACACATGTGCGTTGAAGCTATATCACATTATGGTGACTTCGTGGCCAAGGTAGCTGAACTTTACCCTGAGTACAAGGTTCCGAGTTTGCCGAAGGATACCCAACCTGGATTGCTGAGGGAAAAAAATGGCGCGAAGAAGCTAATGAACTTGGGTTTAGAATTCATTCCCATGGATCAGATCATCAAGGATGCTGTTGAGAGCCTAAAGAGCAAGGGATTTATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

298

Amino Acids

32.83

Weight (kDa)

5.93

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58490
fragaria_vesca	FvH4_3g39460
malus_domestica	MD11G1064000.v1.1 MD11G1064600.v1.1 MD11G1064700.v1.1
prunus_persica	Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.I003000_v2.0.a1
pyrus_communis	pycom11g05410 pycom11g05430 pycom11g05470 pycom11g05480
rosa_chinensis	RchiOBHm_Chr5g0071191
rosa_laevigata	RLG00000036190
rosa_multiflora	Rmu_co8412031.1_g000001 Rmu_sc0000962.1_g000032 Rmu_sc0003638.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009940
rosa_rugosa	Rorug05G0410400
rosa_samantha	Rh3DG226600 Rh3DG309400 Rh5AG466400 Rh5BG484900 Rh5CG509300 Rh5DG496200
rosa_wichuraiana	Rw4G017980 Rw5G043320 Rw6G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	491
AccI	GTMKAC	1 cut(s)	664
AccII	CGCG	2 cut(s)	91, 797
AciI	CCGC	2 cut(s)	141, 312
AclWI	GGATC	2 cut(s)	604, 846
AcoI	YGGCCR	3 cut(s)	335, 654, 708
AcsI	RAATTY	2 cut(s)	446, 824
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	737
AfiI	CCNNNNNNNGG	2 cut(s)	214, 559
AflIII	ACRYGT	2 cut(s)	89, 669
AgsI	TTSAA	1 cut(s)	680
AjnI	CCWGG	3 cut(s)	487, 518, 769
AluBI	AGCT	6 cut(s)	220, 437, 620, 683, 719, 805
AluI	AGCT	6 cut(s)	220, 437, 620, 683, 719, 805
Alw26I	GTCTC	4 cut(s)	47, 98, 104, 313
AlwI	GGATC	2 cut(s)	604, 846
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	3 cut(s)	335, 654, 708
ApeKI	GCWGC	4 cut(s)	153, 263, 437, 564
ApoI	RAATTY	2 cut(s)	446, 824
Asp700I	GAANNNNTTC	1 cut(s)	828
AspLEI	GCGC	2 cut(s)	552, 797
AspS9I	GGNCC	2 cut(s)	226, 369
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	5 cut(s)	62, 368, 493, 550, 710
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	226, 369
BalI	TGGCCA	1 cut(s)	710
BanI	GGYRCC	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	157
BbvCI	CCTCAGC	1 cut(s)	779
BbvI	GCAGC	4 cut(s)	140, 275, 424, 551
BccI	CCATC	4 cut(s)	140, 152, 323, 493
BceAI	ACGGC	2 cut(s)	276, 322
BciT130I	CCWGG	3 cut(s)	489, 520, 771
BciVI	GTATCC	2 cut(s)	417, 754
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	4 cut(s)	47, 98, 104, 313
BfaI	CTAG	3 cut(s)	65, 74, 545
BfuI	GTATCC	2 cut(s)	417, 754
BisI	GCNGC	5 cut(s)	141, 154, 264, 438, 565
BlsI	GCNGC	5 cut(s)	142, 155, 265, 439, 566
Bme1390I	CCNGG	4 cut(s)	230, 489, 520, 771
Bme18I	GGWCC	2 cut(s)	226, 369
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	2 cut(s)	226, 369
BmiI	GGNNCC	3 cut(s)	228, 493, 744
BmrFI	CCNGG	4 cut(s)	230, 489, 520, 771
BmsI	GCATC	4 cut(s)	70, 92, 531, 844
BpiI	GAAGAC	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	779
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	4 cut(s)	453, 518, 711, 834
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 559
Bse1I	ACTGG	1 cut(s)	664
BseBI	CCWGG	3 cut(s)	489, 520, 771
BseDI	CCNNGG	4 cut(s)	453, 518, 711, 834
BseGI	GGATG	3 cut(s)	299, 475, 859
BseLI	CCNNNNNNNGG	2 cut(s)	214, 559
BseMII	CTCAG	2 cut(s)	723, 770
BseNI	ACTGG	1 cut(s)	664
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	4 cut(s)	140, 275, 424, 551
BseYI	CCCAGC	2 cut(s)	275, 323
BsgI	GTGCAG	2 cut(s)	370, 550
Bsh1236I	CGCG	2 cut(s)	91, 797
BshFI	GGCC	3 cut(s)	337, 656, 710
BshNI	GGYRCC	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	159, 230
BslI	CCNNNNNNNGG	2 cut(s)	214, 559
BsmAI	GTCTC	4 cut(s)	47, 98, 104, 313
BsmBI	CGTCTC	4 cut(s)	47, 98, 104, 313
BsnI	GGCC	3 cut(s)	337, 656, 710
BsoBI	CYCGRG	1 cut(s)	209
Bsp143I	GATC	7 cut(s)	108, 193, 234, 348, 596, 838, 843
Bsp19I	CCATGG	1 cut(s)	834
BspACI	CCGC	2 cut(s)	141, 312
BspANI	GGCC	3 cut(s)	337, 656, 710
BspCNI	CTCAG	2 cut(s)	724, 771
BspFNI	CGCG	2 cut(s)	91, 797
BspLI	GGNNCC	3 cut(s)	228, 493, 744
BspPI	GGATC	2 cut(s)	604, 846
BspT107I	GGYRCC	1 cut(s)	491
BsrI	ACTGG	1 cut(s)	664
BssECI	CCNNGG	4 cut(s)	453, 518, 711, 834
BssMI	GATC	7 cut(s)	108, 193, 234, 348, 596, 838, 843
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	3 cut(s)	453, 711, 834
Bst2UI	CCWGG	3 cut(s)	489, 520, 771
Bst4CI	ACNGT	2 cut(s)	190, 496
Bst6I	CTCTTC	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	273, 335, 389
BstDEI	CTNAG	2 cut(s)	732, 779
BstDSI	CCRYGG	1 cut(s)	834
BstENI	CCTNNNNNAGG	1 cut(s)	557
BstF5I	GGATG	3 cut(s)	299, 475, 859
BstFNI	CGCG	2 cut(s)	91, 797
BstHHI	GCGC	2 cut(s)	552, 797
BstKTI	GATC	7 cut(s)	111, 196, 237, 351, 599, 841, 846
BstMAI	GTCTC	4 cut(s)	47, 98, 104, 313
BstMBI	GATC	7 cut(s)	108, 193, 234, 348, 596, 838, 843
BstMWI	GCNNNNNNNGC	5 cut(s)	159, 272, 434, 716, 873
BstNI	CCWGG	3 cut(s)	489, 520, 771
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	4 cut(s)	228, 487, 518, 769
BstUI	CGCG	2 cut(s)	91, 797
BstV1I	GCAGC	4 cut(s)	140, 275, 424, 551
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BsuI	GTATCC	2 cut(s)	417, 754
BsuRI	GGCC	3 cut(s)	337, 656, 710
BtgI	CCRYGG	1 cut(s)	834
BtgZI	GCGATG	1 cut(s)	519
BtsCI	GGATG	3 cut(s)	299, 475, 859
BtsIMutI	CAGTG	2 cut(s)	567, 657
Cac8I	GCNNGC	3 cut(s)	273, 335, 389
CfoI	GCGC	2 cut(s)	552, 797
Cfr13I	GGNCC	2 cut(s)	226, 369
CseI	GACGC	3 cut(s)	80, 97, 151
Csp6I	GTAC	1 cut(s)	736
CviAII	CATG	3 cut(s)	535, 670, 835
CviQI	GTAC	1 cut(s)	736
DdeI	CTNAG	2 cut(s)	732, 779
DpnI	GATC	7 cut(s)	110, 195, 236, 350, 598, 840, 845
DpnII	GATC	7 cut(s)	108, 193, 234, 348, 596, 838, 843
DraI	TTTAAA	1 cut(s)	610
EaeI	YGGCCR	3 cut(s)	335, 654, 708
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EciI	GGCGGA	1 cut(s)	301
Eco130I	CCWWGG	3 cut(s)	453, 711, 834
Eco47I	GGWCC	2 cut(s)	226, 369
Eco88I	CYCGRG	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	824
EcoRII	CCWGG	3 cut(s)	487, 518, 769
EcoT14I	CCWWGG	3 cut(s)	453, 711, 834
ErhI	CCWWGG	3 cut(s)	453, 711, 834
Esp3I	CGTCTC	4 cut(s)	47, 98, 104, 313
FaeI	CATG	3 cut(s)	538, 673, 838
FaiI	YATR	9 cut(s)	536, 577, 593, 642, 671, 686, 696, 836, 892
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	3 cut(s)	534, 669, 834
FblI	GTMKAC	1 cut(s)	664
Fnu4HI	GCNGC	5 cut(s)	141, 154, 264, 438, 565
FokI	GGATG	3 cut(s)	286, 482, 866
Fsp4HI	GCNGC	5 cut(s)	141, 154, 264, 438, 565
FspBI	CTAG	3 cut(s)	65, 74, 545
GlaI	GCGC	2 cut(s)	551, 796
GluI	GCNGC	5 cut(s)	141, 154, 264, 438, 565
GsaI	CCCAGC	2 cut(s)	279, 327
HaeIII	GGCC	3 cut(s)	337, 656, 710
HapII	CCGG	2 cut(s)	159, 230
HgaI	GACGC	3 cut(s)	80, 97, 151
HhaI	GCGC	2 cut(s)	552, 797
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	538, 673, 838
Hin6I	GCGC	2 cut(s)	550, 795
HinP1I	GCGC	2 cut(s)	550, 795
HinfI	GANTC	1 cut(s)	484
HpaII	CCGG	2 cut(s)	159, 230
HphI	GGTGA	5 cut(s)	62, 368, 493, 550, 710
Hpy166II	GTNNAC	1 cut(s)	665
Hpy188I	TCNGA	5 cut(s)	12, 258, 343, 747, 843
Hpy188III	TCNNGA	4 cut(s)	65, 106, 224, 557
Hpy8I	GTNNAC	1 cut(s)	665
Hpy99I	CGWCG	4 cut(s)	21, 24, 91, 194
HpyAV	CCTTC	6 cut(s)	71, 208, 388, 454, 563, 751
HpyCH4III	ACNGT	2 cut(s)	190, 496
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	6 cut(s)	38, 186, 387, 567, 604, 626
HpyF10VI	GCNNNNNNNGC	5 cut(s)	159, 272, 434, 716, 873
HpyF3I	CTNAG	2 cut(s)	732, 779
HpySE526I	ACGT	1 cut(s)	16
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	538, 673, 838
HspAI	GCGC	2 cut(s)	550, 795
Kzo9I	GATC	7 cut(s)	108, 193, 234, 348, 596, 838, 843
LmnI	GCTCC	3 cut(s)	80, 161, 217
Lsp1109I	GCAGC	4 cut(s)	140, 275, 424, 551
LweI	GCATC	4 cut(s)	70, 92, 531, 844
MaeI	CTAG	3 cut(s)	65, 74, 545
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	698
MalI	GATC	7 cut(s)	110, 195, 236, 350, 598, 840, 845
MboI	GATC	7 cut(s)	108, 193, 234, 348, 596, 838, 843
MboII	GAAGA	4 cut(s)	94, 127, 157, 811
MflI	RGATCY	1 cut(s)	596
MlsI	TGGCCA	1 cut(s)	710
MluCI	AATT	2 cut(s)	446, 824
MluI	ACGCGT	1 cut(s)	89
MluNI	TGGCCA	1 cut(s)	710
Mox20I	TGGCCA	1 cut(s)	710
MroXI	GAANNNNTTC	1 cut(s)	828
MscI	TGGCCA	1 cut(s)	710
MseI	TTAA	2 cut(s)	249, 609
MslI	CAYNNNNRTG	6 cut(s)	287, 497, 539, 635, 696, 833
Msp20I	TGGCCA	1 cut(s)	710
MspI	CCGG	2 cut(s)	159, 230
MspR9I	CCNGG	4 cut(s)	230, 489, 520, 771
MvaI	CCWGG	3 cut(s)	489, 520, 771
MvnI	CGCG	2 cut(s)	91, 797
MwoI	GCNNNNNNNGC	5 cut(s)	159, 272, 434, 716, 873
NciI	CCSGG	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	834
NdeII	GATC	7 cut(s)	108, 193, 234, 348, 596, 838, 843
NlaIII	CATG	3 cut(s)	538, 673, 838
NlaIV	GGNNCC	3 cut(s)	228, 493, 744
NmuCI	GTSAC	1 cut(s)	698
NspI	RCATGY	1 cut(s)	673
PciI	ACATGT	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	1 cut(s)	484
PkrI	GCNGC	5 cut(s)	142, 155, 265, 439, 566
PscI	ACATGT	1 cut(s)	669
Psp6I	CCWGG	3 cut(s)	487, 518, 769
PspFI	CCCAGC	2 cut(s)	275, 323
PspGI	CCWGG	3 cut(s)	487, 518, 769
PspN4I	GGNNCC	3 cut(s)	228, 493, 744
PspPI	GGNCC	2 cut(s)	226, 369
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	1 cut(s)	737
RsaNI	GTAC	1 cut(s)	736
RseI	CAYNNNNRTG	6 cut(s)	287, 497, 539, 635, 696, 833
SaqAI	TTAA	2 cut(s)	249, 609
SatI	GCNGC	5 cut(s)	141, 154, 264, 438, 565
Sau3AI	GATC	7 cut(s)	108, 193, 234, 348, 596, 838, 843
Sau96I	GGNCC	2 cut(s)	226, 369
ScrFI	CCNGG	4 cut(s)	230, 489, 520, 771
SfaNI	GCATC	4 cut(s)	70, 92, 531, 844
SinI	GGWCC	2 cut(s)	226, 369
SmiMI	CAYNNNNRTG	6 cut(s)	287, 497, 539, 635, 696, 833
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	2 cut(s)	446, 824
SsiI	CCGC	2 cut(s)	141, 312
SspMI	CTAG	3 cut(s)	65, 74, 545
StyD4I	CCNGG	4 cut(s)	228, 487, 518, 769
StyI	CCWWGG	3 cut(s)	453, 711, 834
TaaI	ACNGT	2 cut(s)	190, 496
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	6 cut(s)	86, 111, 120, 192, 286, 416
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	446, 824
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	2 cut(s)	249, 609
Tru9I	TTAA	2 cut(s)	249, 609
TscAI	CASTG	2 cut(s)	574, 664
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	4 cut(s)	153, 263, 437, 564
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	3 cut(s)	817, 824, 879
TspGWI	ACGGA	2 cut(s)	86, 295
TspRI	CASTG	2 cut(s)	574, 664
VpaK11BI	GGWCC	2 cut(s)	226, 369
XagI	CCTNNNNNAGG	1 cut(s)	557
XapI	RAATTY	2 cut(s)	446, 824
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	664
XmnI	GAANNNNTTC	1 cut(s)	828
XspI	CTAG	3 cut(s)	65, 74, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.