Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003662

Physical Location & Seq

Genomic Coordinates Reverse (-)

80137213 .. 80139850

Gene Structure 2638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG466400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCGAAGCAGGGTGAGGTCGTATGCGTCACCGGTGGAAGCGGCTGCATCGGATCATGGGTCGTCCGCCTCCTCCTCGACCGCGGCTACACCGTCCACGCCACCGTCAAAGACCTCATTTCGATGATGATTCAATTGTGTCTACAGAAGGAGCTGTTGGACCCGGCGATTAAAGGAACGCTGAATGTTCTAACGGCGGCTAAGCAGGCCGGCGTGAAGCGCGTGGTGCTCACGTCCTCCGTCTCGGCCATCACTCCCAGCCCTACTTGGCCGGCCGATGTCGTCAAGAGAGAGGATTGCTGGACTGATGTTGAGTACTGCAAGCAGAAAGGACTGTGGTATCCTTTATCGAAAACTCTGGCGGAGAAAGCTGCGTGGGAATTTGCCGAGGAGAAGGGGTTGGATGTGGTTGTGGTGAATCCAGGGACGGTGATGGGTGATGTTATATCGCCGAGGCTCAATGCTAGCATGTTGATGCTCGTACGCCTTCTTGAAGGCTGCACTGAAACATATGAGAACTTCTTTATGGGATCTGTGCATTTTAAAGATGTAGCTCTAGCACACGTTTTAGTTTACGAGAACAAATCGGCCACTGGTAGGCACATGTGCGTTGAGGCAATATCACATTATGGTGATTTTGTGGCAAAGGTAGCTGAACTTTATCCTGAGTACAAGATTCCCAGTTTGCCAAAGGACACACAGCCTGGGTTGTTGAGGGAAAAGACTGGAGCGAAAAAGCTAATGGACTTGGGTATAGACTTCATCCCCATGGATCAAATTATCAAGGATGCTGTTGAGTGCCTAAAGAGCAAGGGATTTATTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

275

Amino Acids

30.25

Weight (kDa)

6.53

Isoelectric Point (pI)

25.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
3Beta_HSD	PF01073	45 - 192	7e-09	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	50 - 163	6.4e-07	Male sterility protein
Epimerase	PF01370	52 - 199	6.6e-10	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58490
fragaria_vesca	FvH4_3g39460
malus_domestica	MD11G1064000.v1.1 MD11G1064600.v1.1 MD11G1064700.v1.1
prunus_persica	Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.I003000_v2.0.a1
pyrus_communis	pycom11g05410 pycom11g05430 pycom11g05470 pycom11g05480
rosa_chinensis	RchiOBHm_Chr5g0071191
rosa_laevigata	RLG00000036190
rosa_multiflora	Rmu_co8412031.1_g000001 Rmu_sc0000962.1_g000032 Rmu_sc0003638.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009940
rosa_rugosa	Rorug05G0410400
rosa_samantha	Rh3DG226600 Rh3DG309400 Rh5AG466400 Rh5BG484900 Rh5CG509300 Rh5DG496200
rosa_wichuraiana	Rw4G017980 Rw5G043320 Rw6G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	142
AccII	CGCG	2 cut(s)	84, 222
AciI	CCGC	6 cut(s)	42, 67, 82, 84, 197, 362
AclWI	GGATC	3 cut(s)	61, 538, 780
AcoI	YGGCCR	4 cut(s)	246, 269, 273, 588
AcsI	RAATTY	1 cut(s)	380
AfaI	GTAC	3 cut(s)	317, 483, 671
AfiI	CCNNNNNNNGG	1 cut(s)	597
AflIII	ACRYGT	2 cut(s)	562, 603
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	134, 494
AjiI	CACGTC	1 cut(s)	234
AjnI	CCWGG	2 cut(s)	421, 703
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	5 cut(s)	154, 371, 554, 653, 739
AluI	AGCT	5 cut(s)	154, 371, 554, 653, 739
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	3 cut(s)	61, 538, 780
AoxI	GGCC	5 cut(s)	207, 246, 269, 273, 588
ApeKI	GCWGC	3 cut(s)	45, 371, 498
ApoI	RAATTY	1 cut(s)	380
AsiGI	ACCGGT	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	6 cut(s)	22, 26, 427, 442, 449, 644
AsuNHI	GCTAGC	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	160
BaeI	ACNNNNGTAYC	2 cut(s)	323, 356
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	32, 358, 485
BccI	CCATC	2 cut(s)	257, 427
BceAI	ACGGC	1 cut(s)	210
BciT130I	CCWGG	2 cut(s)	423, 705
BciVI	GTATCC	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	2 cut(s)	465, 557
BfmI	CTRYAG	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	6 cut(s)	43, 46, 85, 198, 372, 499
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	6 cut(s)	44, 47, 86, 199, 373, 500
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	3 cut(s)	164, 423, 705
Bme18I	GGWCC	1 cut(s)	160
BmgBI	CACGTC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	3 cut(s)	164, 423, 705
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	3 cut(s)	57, 465, 778
BmtI	GCTAGC	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	675
BpmI	CTGGAG	1 cut(s)	747
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	164
BsaJI	CCNNGG	6 cut(s)	82, 387, 422, 452, 704, 768
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	597
Bse118I	RCCGGY	3 cut(s)	32, 209, 271
Bse1I	ACTGG	3 cut(s)	598, 681, 730
BseBI	CCWGG	2 cut(s)	423, 705
BseDI	CCNNGG	6 cut(s)	82, 387, 422, 452, 704, 768
BseGI	GGATG	3 cut(s)	409, 762, 793
BseLI	CCNNNNNNNGG	1 cut(s)	597
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	3 cut(s)	598, 681, 730
BseRI	GAGGAG	3 cut(s)	62, 65, 404
BseX3I	CGGCCG	1 cut(s)	273
BseXI	GCAGC	3 cut(s)	32, 358, 485
BseYI	CCCAGC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	484
Bsh1236I	CGCG	2 cut(s)	84, 222
Bsh1285I	CGRYCG	2 cut(s)	82, 276
BshFI	GGCC	5 cut(s)	209, 248, 271, 275, 590
BshTI	ACCGGT	1 cut(s)	32
BsiEI	CGRYCG	2 cut(s)	82, 276
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	4 cut(s)	33, 164, 210, 272
BsiWI	CGTACG	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	597
BsmAI	GTCTC	1 cut(s)	247
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	5 cut(s)	209, 248, 271, 275, 590
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	53, 530, 772
Bsp1720I	GCTNAGC	1 cut(s)	201
Bsp19I	CCATGG	1 cut(s)	768
BspACI	CCGC	6 cut(s)	42, 67, 82, 84, 197, 362
BspANI	GGCC	5 cut(s)	209, 248, 271, 275, 590
BspCNI	CTCAG	1 cut(s)	658
BspFNI	CGCG	2 cut(s)	84, 222
BspLI	GGNNCC	1 cut(s)	162
BspOI	GCTAGC	1 cut(s)	468
BspPI	GGATC	3 cut(s)	61, 538, 780
BsrFI	RCCGGY	3 cut(s)	32, 209, 271
BsrI	ACTGG	3 cut(s)	598, 681, 730
BssAI	RCCGGY	3 cut(s)	32, 209, 271
BssECI	CCNNGG	6 cut(s)	82, 387, 422, 452, 704, 768
BssMI	GATC	3 cut(s)	53, 530, 772
BssT1I	CCWWGG	1 cut(s)	768
Bst2UI	CCWGG	2 cut(s)	423, 705
Bst4CI	ACNGT	4 cut(s)	94, 106, 336, 430
BstC8I	GCNNGC	5 cut(s)	207, 211, 273, 323, 466
BstDEI	CTNAG	2 cut(s)	201, 666
BstDSI	CCRYGG	2 cut(s)	82, 768
BstF5I	GGATG	3 cut(s)	409, 762, 793
BstFNI	CGCG	2 cut(s)	84, 222
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	3 cut(s)	56, 533, 775
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	3 cut(s)	53, 530, 772
BstMCI	CGRYCG	2 cut(s)	82, 276
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 219, 226, 368, 650, 807
BstNI	CCWGG	2 cut(s)	423, 705
BstNSI	RCATGY	2 cut(s)	472, 607
BstSCI	CCNGG	3 cut(s)	162, 421, 703
BstSFI	CTRYAG	1 cut(s)	143
BstUI	CGCG	2 cut(s)	84, 222
BstV1I	GCAGC	3 cut(s)	32, 358, 485
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
BstZI	CGGCCG	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	5 cut(s)	209, 248, 271, 275, 590
BtgI	CCRYGG	2 cut(s)	82, 768
BtrI	CACGTC	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	409, 762, 793
BtsIMutI	CAGTG	2 cut(s)	501, 591
Cac8I	GCNNGC	5 cut(s)	207, 211, 273, 323, 466
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	3 cut(s)	32, 209, 271
Cfr13I	GGNCC	1 cut(s)	160
Cfr42I	CCGCGG	1 cut(s)	85
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	3 cut(s)	316, 482, 670
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	4 cut(s)	57, 469, 604, 769
CviQI	GTAC	3 cut(s)	316, 482, 670
DdeI	CTNAG	2 cut(s)	201, 666
DpnI	GATC	3 cut(s)	55, 532, 774
DpnII	GATC	3 cut(s)	53, 530, 772
DraI	TTTAAA	1 cut(s)	544
EaeI	YGGCCR	4 cut(s)	246, 269, 273, 588
EagI	CGGCCG	1 cut(s)	273
EciI	GGCGGA	2 cut(s)	56, 377
EclXI	CGGCCG	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	768
Eco47I	GGWCC	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	421, 703
EcoT14I	CCWWGG	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	768
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	4 cut(s)	60, 472, 607, 772
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	4 cut(s)	56, 468, 603, 768
FauNDI	CATATG	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	142
Fnu4HI	GCNGC	6 cut(s)	43, 46, 85, 198, 372, 499
FokI	GGATG	3 cut(s)	416, 749, 800
FseI	GGCCGGCC	1 cut(s)	275
Fsp4HI	GCNGC	6 cut(s)	43, 46, 85, 198, 372, 499
FspBI	CTAG	2 cut(s)	465, 557
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	6 cut(s)	43, 46, 85, 198, 372, 499
GsaI	CCCAGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	5 cut(s)	209, 248, 271, 275, 590
HapII	CCGG	4 cut(s)	33, 164, 210, 272
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	60, 472, 607, 772
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	3 cut(s)	130, 418, 676
HpaII	CCGG	4 cut(s)	33, 164, 210, 272
HphI	GGTGA	6 cut(s)	22, 26, 427, 442, 449, 644
Hpy166II	GTNNAC	3 cut(s)	97, 143, 574
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	3 cut(s)	286, 491, 665
Hpy8I	GTNNAC	3 cut(s)	97, 143, 574
HpyAV	CCTTC	4 cut(s)	142, 388, 488, 497
HpyCH4III	ACNGT	4 cut(s)	94, 106, 336, 430
HpyCH4IV	ACGT	2 cut(s)	233, 564
HpyCH4V	TGCA	4 cut(s)	48, 321, 501, 538
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 219, 226, 368, 650, 807
HpyF3I	CTNAG	2 cut(s)	201, 666
HpySE526I	ACGT	2 cut(s)	233, 564
Hsp92II	CATG	4 cut(s)	60, 472, 607, 772
HspAI	GCGC	1 cut(s)	220
KroI	GCCGGC	2 cut(s)	209, 271
KroNI	GCCGGC	2 cut(s)	211, 273
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	53, 530, 772
LmnI	GCTCC	2 cut(s)	151, 728
Lsp1109I	GCAGC	3 cut(s)	32, 358, 485
LweI	GCATC	3 cut(s)	57, 465, 778
MaeI	CTAG	2 cut(s)	465, 557
MaeII	ACGT	2 cut(s)	233, 564
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	3 cut(s)	55, 532, 774
MboI	GATC	3 cut(s)	53, 530, 772
MfeI	CAATTG	1 cut(s)	134
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	3 cut(s)	134, 380, 777
MmeI	TCCRAC	2 cut(s)	138, 381
MroNI	GCCGGC	2 cut(s)	209, 271
MseI	TTAA	2 cut(s)	171, 543
MslI	CAYNNNNRTG	4 cut(s)	122, 473, 630, 767
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	4 cut(s)	33, 164, 210, 272
MspR9I	CCNGG	3 cut(s)	164, 423, 705
MunI	CAATTG	1 cut(s)	134
MvaI	CCWGG	2 cut(s)	423, 705
MvnI	CGCG	2 cut(s)	84, 222
MwoI	GCNNNNNNNGC	6 cut(s)	206, 219, 226, 368, 650, 807
NaeI	GCCGGC	2 cut(s)	211, 273
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	768
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	3 cut(s)	53, 530, 772
NgoMIV	GCCGGC	2 cut(s)	209, 271
NheI	GCTAGC	1 cut(s)	464
NlaIII	CATG	4 cut(s)	60, 472, 607, 772
NlaIV	GGNNCC	1 cut(s)	162
NmeAIII	GCCGAG	3 cut(s)	224, 412, 477
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	2 cut(s)	472, 607
PciI	ACATGT	1 cut(s)	603
PdiI	GCCGGC	2 cut(s)	211, 273
PfeI	GAWTC	3 cut(s)	130, 418, 676
Pfl23II	CGTACG	1 cut(s)	481
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	6 cut(s)	44, 47, 86, 199, 373, 500
PscI	ACATGT	1 cut(s)	603
Psp6I	CCWGG	2 cut(s)	421, 703
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	421, 703
PspLI	CGTACG	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	530
RigI	GGCCGGCC	1 cut(s)	275
RsaI	GTAC	3 cut(s)	317, 483, 671
RsaNI	GTAC	3 cut(s)	316, 482, 670
RseI	CAYNNNNRTG	4 cut(s)	122, 473, 630, 767
SacII	CCGCGG	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	171, 543
SatI	GCNGC	6 cut(s)	43, 46, 85, 198, 372, 499
Sau3AI	GATC	3 cut(s)	53, 530, 772
Sau96I	GGNCC	1 cut(s)	160
ScaI	AGTACT	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	164, 423, 705
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	3 cut(s)	57, 465, 778
SfcI	CTRYAG	1 cut(s)	143
Sfr303I	CCGCGG	1 cut(s)	85
SgrAI	CRCCGGYG	1 cut(s)	32
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	4 cut(s)	122, 473, 630, 767
Sse9I	AATT	3 cut(s)	134, 380, 777
SsiI	CCGC	6 cut(s)	42, 67, 82, 84, 197, 362
SspMI	CTAG	2 cut(s)	465, 557
StyD4I	CCNGG	3 cut(s)	162, 421, 703
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	4 cut(s)	94, 106, 336, 430
TaiI	ACGT	2 cut(s)	236, 567
TaqI	TCGA	4 cut(s)	5, 78, 122, 350
TasI	AATT	3 cut(s)	134, 380, 777
TatI	WGTACW	2 cut(s)	315, 669
TauI	GCSGC	3 cut(s)	45, 87, 200
TfiI	GAWTC	3 cut(s)	130, 418, 676
Tru1I	TTAA	2 cut(s)	171, 543
Tru9I	TTAA	2 cut(s)	171, 543
TscAI	CASTG	2 cut(s)	508, 598
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	45, 371, 498
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	751
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	2 cut(s)	508, 598
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	2 cut(s)	472, 607
XmiI	GTMKAC	1 cut(s)	142
XspI	CTAG	2 cut(s)	465, 557
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.