Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003662

Physical Location & Seq

Genomic Coordinates Forward (+)

4176266 .. 4178755

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTCGAAGCAGGGTGAGGTCGTATGCGTCACCGGTGGAAGCGGCTGCATTGGATCGTGGCTCGTCCGTCTCCTCCTCCACCGTGATTACACCGTCCACGCCACCGTCAAGGATCTTAAGGACGAGGGCGAGACGAAGCATCTAGAAGCGTTAGTAGAGGGAGCAGAGTCGCGCCTCCGTCTCTTCCAGATTGACCTCCTCGACTACAACTCCATACTCGCCGCCGTCAATGGCTGCTCCGGCGTCTTCCACCTCGCCTCTCCCTGCATCGTCGATCAAGTCCACGACCCCGAGAAGGAGCTTCTGGACCCGGCGATCTATGGAACGCTCAATGTTCTGACGGCGGCGAAGCACGCTGGGGTCAGCCGTGTGGTGCTGACGTCATCCATTTCCGCCATCACTCCCAGCCGAAGCTGGCCGTCTGATAAGGTCAAGGGCGAGGATTGCTGGACAGACATTGACTACTGCAAGCAGAAGGGATTGTGGTATCCATTATCAAAAACGCTGGCGGAGAAAGCTGCGTGGGAATTTGCCAAGGAGAAGGGGCTGGATGTGATTGTGGTGAATCCGGGCACGGTGATGGGCCCTGTTATCTCGCCCAGGCTCAATGCTAGCATGTTGATGCTCGTTCGCCTTCTTGAGGGTTGCACTGAAACATATGAGGACTTCTTTATGGGATCTGTGCATTTTAAAGATGTAGCTCAAGCGCACATTTTAGTGTATGAGAACAAATCAGCAGCAGGTAGGCACTTGTGTGTGGAAGCTATATCACATTATGGTGACTTTGTGGCAAAGGTTGCTGAACTTTACCCTGAGTACAAGGTTCCCAGTTTGCCAAAGGACACCCAACCGGGCTTGCTGAGGGAAAAGAACGGAGCGAAGAAGCTAATGAACTTGGGTTTAGAATTCATTCCCATGGATCAAATTATCAAGGATGGTGTTGAGAGCCTAAAGAGCAAGGGATTTATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

325

Amino Acids

35.59

Weight (kDa)

5.95

Isoelectric Point (pI)

25.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58490
fragaria_vesca	FvH4_3g39460
malus_domestica	MD11G1064000.v1.1 MD11G1064600.v1.1 MD11G1064700.v1.1
prunus_persica	Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.I003000_v2.0.a1
pyrus_communis	pycom11g05410 pycom11g05430 pycom11g05470 pycom11g05480
rosa_chinensis	RchiOBHm_Chr5g0071191
rosa_laevigata	RLG00000036190
rosa_multiflora	Rmu_co8412031.1_g000001 Rmu_sc0000962.1_g000032 Rmu_sc0003638.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009940
rosa_rugosa	Rorug05G0410400
rosa_samantha	Rh3DG226600 Rh3DG309400 Rh5AG466400 Rh5BG484900 Rh5CG509300 Rh5DG496200
rosa_wichuraiana	Rw4G017980 Rw5G043320 Rw6G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	731
AccII	CGCG	1 cut(s)	172
AciI	CCGC	5 cut(s)	42, 222, 344, 393, 509
AclWI	GGATC	4 cut(s)	61, 120, 685, 927
AcoI	YGGCCR	1 cut(s)	416
AcsI	RAATTY	2 cut(s)	527, 905
AcyI	GRCGYC	2 cut(s)	243, 380
AfaI	GTAC	1 cut(s)	818
AfiI	CCNNNNNNNGG	2 cut(s)	295, 640
AflII	CTTAAG	1 cut(s)	116
AgeI	ACCGGT	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	599
AleI	CACNNNNGTG	1 cut(s)	753
AluBI	AGCT	6 cut(s)	301, 414, 518, 701, 764, 886
AluI	AGCT	6 cut(s)	301, 414, 518, 701, 764, 886
Alw26I	GTCTC	3 cut(s)	74, 125, 185
AlwI	GGATC	4 cut(s)	61, 120, 685, 927
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	2 cut(s)	416, 583
ApaI	GGGCCC	1 cut(s)	587
ApeKI	GCWGC	4 cut(s)	45, 234, 518, 737
ApoI	RAATTY	2 cut(s)	527, 905
AsiGI	ACCGGT	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	909
AspLEI	GCGC	2 cut(s)	174, 709
AspS9I	GGNCC	3 cut(s)	307, 583, 584
AsuC2I	CCSGG	3 cut(s)	311, 570, 852
AsuHPI	GGTGA	5 cut(s)	22, 26, 574, 589, 791
AsuNHI	GCTAGC	1 cut(s)	611
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	2 cut(s)	575, 587
BanII	GRGCYC	1 cut(s)	587
BbsI	GAAGAC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	860
BbvI	GCAGC	4 cut(s)	32, 221, 505, 749
BccI	CCATC	3 cut(s)	404, 574, 929
BceAI	ACGGC	4 cut(s)	209, 351, 357, 403
BciT130I	CCWGG	1 cut(s)	601
BciVI	GTATCC	1 cut(s)	498
BcnI	CCSGG	3 cut(s)	311, 570, 852
BcoDI	GTCTC	3 cut(s)	74, 125, 185
BfaI	CTAG	2 cut(s)	143, 612
BfrI	CTTAAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	731
BfuI	GTATCC	1 cut(s)	498
BisI	GCNGC	7 cut(s)	43, 46, 222, 235, 345, 519, 738
BlsI	GCNGC	7 cut(s)	44, 47, 223, 236, 346, 520, 739
Bme1390I	CCNGG	4 cut(s)	311, 570, 601, 852
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	3 cut(s)	307, 583, 584
BmiI	GGNNCC	3 cut(s)	309, 585, 825
BmrFI	CCNGG	4 cut(s)	311, 570, 601, 852
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	3 cut(s)	148, 276, 612
BmtI	GCTAGC	1 cut(s)	615
BmuI	ACTGGG	1 cut(s)	822
BpiI	GAAGAC	1 cut(s)	238
Bpu10I	CCTNAGC	1 cut(s)	860
BpuEI	CTTGAG	2 cut(s)	659, 687
BpuMI	CCSGG	3 cut(s)	311, 570, 852
BsaHI	GRCGYC	2 cut(s)	243, 380
BsaJI	CCNNGG	3 cut(s)	534, 599, 915
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 640
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	828
BseBI	CCWGG	1 cut(s)	601
BseDI	CCNNGG	3 cut(s)	534, 599, 915
BseGI	GGATG	3 cut(s)	383, 556, 940
BseLI	CCNNNNNNNGG	2 cut(s)	295, 640
BseMII	CTCAG	2 cut(s)	804, 851
BseNI	ACTGG	1 cut(s)	828
BseRI	GAGGAG	3 cut(s)	62, 65, 188
BseSI	GKGCMC	2 cut(s)	575, 587
BseXI	GCAGC	4 cut(s)	32, 221, 505, 749
BseYI	CCCAGC	2 cut(s)	356, 404
Bsh1236I	CGCG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	418, 585
BshTI	ACCGGT	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	5 cut(s)	33, 240, 311, 569, 851
BslI	CCNNNNNNNGG	2 cut(s)	295, 640
BsmAI	GTCTC	3 cut(s)	74, 125, 185
BsmBI	CGTCTC	3 cut(s)	74, 125, 185
BsnI	GGCC	2 cut(s)	418, 585
BsoBI	CYCGRG	1 cut(s)	290
Bsp120I	GGGCCC	1 cut(s)	583
Bsp1286I	GDGCHC	2 cut(s)	575, 587
Bsp143I	GATC	6 cut(s)	53, 112, 274, 315, 677, 919
Bsp19I	CCATGG	1 cut(s)	915
BspACI	CCGC	5 cut(s)	42, 222, 344, 393, 509
BspANI	GGCC	2 cut(s)	418, 585
BspCNI	CTCAG	2 cut(s)	805, 852
BspFNI	CGCG	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	309, 585, 825
BspMI	ACCTGC	1 cut(s)	731
BspOI	GCTAGC	1 cut(s)	615
BspPI	GGATC	4 cut(s)	61, 120, 685, 927
BspTI	CTTAAG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	828
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	3 cut(s)	534, 599, 915
BssMI	GATC	6 cut(s)	53, 112, 274, 315, 677, 919
BssNI	GRCGYC	2 cut(s)	243, 380
BssT1I	CCWWGG	2 cut(s)	534, 915
Bst2UI	CCWGG	1 cut(s)	601
Bst4CI	ACNGT	4 cut(s)	83, 94, 106, 577
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	2 cut(s)	243, 380
BstAFI	CTTAAG	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstC8I	GCNNGC	6 cut(s)	354, 416, 470, 507, 613, 857
BstDEI	CTNAG	2 cut(s)	813, 860
BstDSI	CCRYGG	1 cut(s)	915
BstENI	CCTNNNNNAGG	1 cut(s)	638
BstF5I	GGATG	3 cut(s)	383, 556, 940
BstFNI	CGCG	1 cut(s)	172
BstHHI	GCGC	2 cut(s)	174, 709
BstKTI	GATC	6 cut(s)	56, 115, 277, 318, 680, 922
BstMAI	GTCTC	3 cut(s)	74, 125, 185
BstMBI	GATC	6 cut(s)	53, 112, 274, 315, 677, 919
BstMWI	GCNNNNNNNGC	6 cut(s)	240, 353, 444, 515, 797, 954
BstNI	CCWGG	1 cut(s)	601
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	4 cut(s)	309, 568, 599, 850
BstSLI	GKGCMC	2 cut(s)	575, 587
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	4 cut(s)	32, 221, 505, 749
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	2 cut(s)	112, 677
BstYI	RGATCY	2 cut(s)	112, 677
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	418, 585
BtgI	CCRYGG	1 cut(s)	915
BtsCI	GGATG	3 cut(s)	383, 556, 940
BtsIMutI	CAGTG	1 cut(s)	648
BveI	ACCTGC	1 cut(s)	731
Cac8I	GCNNGC	6 cut(s)	354, 416, 470, 507, 613, 857
CfoI	GCGC	2 cut(s)	174, 709
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	307, 583, 584
CseI	GACGC	2 cut(s)	16, 232
Csp6I	GTAC	1 cut(s)	817
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	2 cut(s)	616, 916
CviQI	GTAC	1 cut(s)	817
DdeI	CTNAG	2 cut(s)	813, 860
DpnI	GATC	6 cut(s)	55, 114, 276, 317, 679, 921
DpnII	GATC	6 cut(s)	53, 112, 274, 315, 677, 919
DraI	TTTAAA	1 cut(s)	691
EaeI	YGGCCR	1 cut(s)	416
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	2 cut(s)	382, 524
Eco130I	CCWWGG	2 cut(s)	534, 915
Eco24I	GRGCYC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	290
EcoNI	CCTNNNNNAGG	1 cut(s)	638
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	905
EcoRII	CCWGG	1 cut(s)	599
EcoT14I	CCWWGG	2 cut(s)	534, 915
EcoT38I	GRGCYC	1 cut(s)	587
ErhI	CCWWGG	2 cut(s)	534, 915
Esp3I	CGTCTC	3 cut(s)	74, 125, 185
FaeI	CATG	2 cut(s)	619, 919
FatI	CATG	2 cut(s)	615, 915
FauNDI	CATATG	1 cut(s)	658
Fnu4HI	GCNGC	7 cut(s)	43, 46, 222, 235, 345, 519, 738
FokI	GGATG	3 cut(s)	370, 563, 947
FriOI	GRGCYC	1 cut(s)	587
Fsp4HI	GCNGC	7 cut(s)	43, 46, 222, 235, 345, 519, 738
FspBI	CTAG	2 cut(s)	143, 612
GlaI	GCGC	2 cut(s)	173, 708
GluI	GCNGC	7 cut(s)	43, 46, 222, 235, 345, 519, 738
GsaI	CCCAGC	2 cut(s)	360, 408
HaeIII	GGCC	2 cut(s)	418, 585
HapII	CCGG	5 cut(s)	33, 240, 311, 569, 851
HgaI	GACGC	2 cut(s)	16, 232
HhaI	GCGC	2 cut(s)	174, 709
Hin1I	GRCGYC	2 cut(s)	243, 380
Hin1II	CATG	2 cut(s)	619, 919
Hin6I	GCGC	2 cut(s)	172, 707
HinP1I	GCGC	2 cut(s)	172, 707
HinfI	GANTC	2 cut(s)	167, 565
HpaII	CCGG	5 cut(s)	33, 240, 311, 569, 851
HphI	GGTGA	5 cut(s)	22, 26, 574, 589, 791
Hpy166II	GTNNAC	2 cut(s)	97, 283
Hpy188I	TCNGA	2 cut(s)	339, 424
Hpy188III	TCNNGA	4 cut(s)	143, 187, 305, 638
Hpy8I	GTNNAC	2 cut(s)	97, 283
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	4 cut(s)	289, 469, 535, 644
HpyCH4III	ACNGT	4 cut(s)	83, 94, 106, 577
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	5 cut(s)	48, 267, 468, 648, 685
HpyF10VI	GCNNNNNNNGC	6 cut(s)	240, 353, 444, 515, 797, 954
HpyF3I	CTNAG	2 cut(s)	813, 860
HpySE526I	ACGT	1 cut(s)	380
Hsp92I	GRCGYC	2 cut(s)	243, 380
Hsp92II	CATG	2 cut(s)	619, 919
HspAI	GCGC	2 cut(s)	172, 707
Kzo9I	GATC	6 cut(s)	53, 112, 274, 315, 677, 919
LmnI	GCTCC	4 cut(s)	161, 242, 298, 875
Lsp1109I	GCAGC	4 cut(s)	32, 221, 505, 749
LweI	GCATC	3 cut(s)	148, 276, 612
MaeI	CTAG	2 cut(s)	143, 612
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	2 cut(s)	28, 779
MalI	GATC	6 cut(s)	55, 114, 276, 317, 679, 921
MboI	GATC	6 cut(s)	53, 112, 274, 315, 677, 919
MboII	GAAGA	3 cut(s)	175, 238, 892
MflI	RGATCY	2 cut(s)	112, 677
MhlI	GDGCHC	2 cut(s)	575, 587
MluCI	AATT	3 cut(s)	527, 905, 924
MlyI	GAGTC	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	909
MseI	TTAA	2 cut(s)	117, 690
MslI	CAYNNNNRTG	6 cut(s)	578, 620, 716, 753, 777, 914
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	5 cut(s)	33, 240, 311, 569, 851
MspR9I	CCNGG	4 cut(s)	311, 570, 601, 852
MvaI	CCWGG	1 cut(s)	601
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	6 cut(s)	240, 353, 444, 515, 797, 954
NciI	CCSGG	3 cut(s)	311, 570, 852
NcoI	CCATGG	1 cut(s)	915
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	6 cut(s)	53, 112, 274, 315, 677, 919
NheI	GCTAGC	1 cut(s)	611
NlaIII	CATG	2 cut(s)	619, 919
NlaIV	GGNNCC	3 cut(s)	309, 585, 825
NmuCI	GTSAC	2 cut(s)	28, 779
NspI	RCATGY	1 cut(s)	619
OliI	CACNNNNGTG	1 cut(s)	753
PdmI	GAANNNNTTC	1 cut(s)	909
PfeI	GAWTC	1 cut(s)	565
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	7 cut(s)	44, 47, 223, 236, 346, 520, 739
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	599
PspFI	CCCAGC	2 cut(s)	356, 404
PspGI	CCWGG	1 cut(s)	599
PspN4I	GGNNCC	3 cut(s)	309, 585, 825
PspOMI	GGGCCC	1 cut(s)	583
PspPI	GGNCC	3 cut(s)	307, 583, 584
PsuI	RGATCY	2 cut(s)	112, 677
RsaI	GTAC	1 cut(s)	818
RsaNI	GTAC	1 cut(s)	817
RseI	CAYNNNNRTG	6 cut(s)	578, 620, 716, 753, 777, 914
SaqAI	TTAA	2 cut(s)	117, 690
SatI	GCNGC	7 cut(s)	43, 46, 222, 235, 345, 519, 738
Sau3AI	GATC	6 cut(s)	53, 112, 274, 315, 677, 919
Sau96I	GGNCC	3 cut(s)	307, 583, 584
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	4 cut(s)	311, 570, 601, 852
SduI	GDGCHC	2 cut(s)	575, 587
SfaNI	GCATC	3 cut(s)	148, 276, 612
SgrAI	CRCCGGYG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	6 cut(s)	578, 620, 716, 753, 777, 914
SmlI	CTYRAG	3 cut(s)	116, 638, 702
SmoI	CTYRAG	3 cut(s)	116, 638, 702
Sse9I	AATT	3 cut(s)	527, 905, 924
SsiI	CCGC	5 cut(s)	42, 222, 344, 393, 509
SspMI	CTAG	2 cut(s)	143, 612
StyD4I	CCNGG	4 cut(s)	309, 568, 599, 850
StyI	CCWWGG	2 cut(s)	534, 915
TaaI	ACNGT	4 cut(s)	83, 94, 106, 577
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	3 cut(s)	5, 201, 273
TasI	AATT	3 cut(s)	527, 905, 924
TatI	WGTACW	1 cut(s)	816
TauI	GCSGC	3 cut(s)	45, 224, 347
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	2 cut(s)	117, 690
Tru9I	TTAA	2 cut(s)	117, 690
TscAI	CASTG	1 cut(s)	655
TseFI	GTSAC	2 cut(s)	28, 779
TseI	GCWGC	4 cut(s)	45, 234, 518, 737
Tsp45I	GTSAC	2 cut(s)	28, 779
TspDTI	ATGAA	3 cut(s)	898, 905, 960
TspGWI	ACGGA	3 cut(s)	56, 167, 888
TspRI	CASTG	1 cut(s)	655
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	307
XagI	CCTNNNNNAGG	1 cut(s)	638
XapI	RAATTY	2 cut(s)	527, 905
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	1 cut(s)	619
XmnI	GAANNNNTTC	1 cut(s)	909
XspI	CTAG	2 cut(s)	143, 612
ZraI	GACGTC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.