RchiOBHm_Chr5g0071191

cinnamoyl-CoA reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003662
Physical Location & Seq
Reverse (-)
77084810 .. 77087873
3064 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34630

Sequence Viewer

Length: 972 bp
ATGTCGAAGCAGGGTGAGGTCGTATGCGTCACCGGTGGAAGCGGCTGCATCGGATCATGGGTCGTCCGCCTCCTCCTCGACCGCGGCTACACCGTCCACGCCACCGTCAAAGACCTCAAGGACGACGGCGAGACGAAGCATCTAGAAGCCCTAGAAGGAGCCCAAACGCGCCTCCGCCTCTTCCAGATCGACCTCCTCGACTACGATTCCATCTCCGCCGCAGTCCACGGCTGCTCCGGCGTCTTCCACCTCGCCTCTCCTTGCATCGTCGACCAAGTCCATGACCCCGAGAAGGAGCTTTTGGACCCGGCGATTAAAGGAACCCTGAATGTTCTAACGGCGGCTAACCAGGCCGGCGTGAAGCGCGTGGTGCTCACGTCCTCCATCTCGGCCATCACTCCCAGCCCTACTTGGCCGGCCGATGTCGTCAAGAGAGAGGATTGCTGGACTGATGTTGAGTACTGCAAGCAGAAAGGACTGTGGTATCCTTTATCGAAAACTCTGGCGGAGAAAGCTGCGTGGGAATTTGCCGAGGAGAAGGGGTTGGATGTGGTTGTGGTGAATCCGGGGACGGTGATGGGTGATGTTATATCGCCGAGGCTCAATGCTAGCATGTTGATGCTTGTTCGCCTTCTTGAAGGCTGCACTGAAACATATGAGAACTTCTTTATGGGATCTGTGCATTTTAAAGATGTAGCTCTAGCACACGTTTTAGTTTACGAGAACAAATCGGCCACTGGTAGGCACTTGTGCGTTGAGGCAATATCACATTATGGTGATTTTGTGTCAAAGGTAGCTGAACTTTATCCCGAGTACAAGATTCCCAGTTTGCCAAAGGACACACAGCCTGGGTTGTTGAGGGAAAAGACTGGAGCGAAAAAGCTAATGGACTTAGGTATAGACTTCATTCCCATGGATCAAATTATCAAGGATGCTGTTGAGTGCCTAAAGAGCAAGGGATTTATTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

323

Amino Acids

35.43

Weight (kDa)

5.52

Isoelectric Point (pI)

22.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 7 - 129 1.8e-12 NmrA-like family
Epimerase PF01370 8 - 245 6.7e-26 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 8 - 135 3.4e-09 Polysaccharide biosynthesis protein
KR PF08659 8 - 135 1.7e-08 KR domain
3Beta_HSD PF01073 10 - 240 6.5e-21 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 128 3.6e-17 GDP-mannose 4,6 dehydratase
NAD_binding_10 PF13460 12 - 192 8.5e-15 NAD(P)H-binding
NAD_binding_4 PF07993 75 - 209 9.2e-08 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 270
AccII CGCG 3 cut(s) 84, 169, 366
AciI CCGC 9 cut(s) 42, 67, 82, 84, 175, 216, 219, 341, 506
AclWI GGATC 3 cut(s) 61, 682, 924
AcoI YGGCCR 4 cut(s) 390, 413, 417, 732
AcsI RAATTY 1 cut(s) 524
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 2 cut(s) 461, 815
AfiI CCNNNNNNNGG 2 cut(s) 292, 741
AflIII ACRYGT 1 cut(s) 706
AgeI ACCGGT 1 cut(s) 32
AgsI TTSAA 1 cut(s) 638
AjiI CACGTC 1 cut(s) 378
AjnI CCWGG 2 cut(s) 348, 847
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 5 cut(s) 298, 515, 698, 797, 883
AluI AGCT 5 cut(s) 298, 515, 698, 797, 883
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 3 cut(s) 61, 682, 924
Ama87I CYCGRG 2 cut(s) 287, 809
AoxI GGCC 5 cut(s) 351, 390, 413, 417, 732
ApeKI GCWGC 4 cut(s) 45, 231, 515, 642
ApoI RAATTY 1 cut(s) 524
AsiGI ACCGGT 1 cut(s) 32
AspLEI GCGC 2 cut(s) 171, 366
AspS9I GGNCC 1 cut(s) 304
AsuC2I CCSGG 2 cut(s) 308, 567
AsuHPI GGTGA 6 cut(s) 22, 26, 571, 586, 593, 788
AsuNHI GCTAGC 1 cut(s) 608
AvaI CYCGRG 2 cut(s) 287, 809
AvaII GGWCC 1 cut(s) 304
BaeI ACNNNNGTAYC 2 cut(s) 467, 500
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 4 cut(s) 32, 218, 502, 629
BccI CCATC 4 cut(s) 218, 392, 401, 571
BceAI ACGGC 3 cut(s) 142, 244, 354
BciT130I CCWGG 2 cut(s) 350, 849
BciVI GTATCC 1 cut(s) 495
BcnI CCSGG 2 cut(s) 308, 567
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 4 cut(s) 143, 152, 609, 701
BfuI GTATCC 1 cut(s) 495
BisI GCNGC 8 cut(s) 43, 46, 85, 219, 232, 342, 516, 643
BlsI GCNGC 8 cut(s) 44, 47, 86, 220, 233, 343, 517, 644
BmcAI AGTACT 1 cut(s) 461
Bme1390I CCNGG 4 cut(s) 308, 350, 567, 849
Bme18I GGWCC 1 cut(s) 304
BmeT110I CYCGRG 2 cut(s) 287, 809
BmgBI CACGTC 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 3 cut(s) 160, 306, 322
BmrFI CCNGG 4 cut(s) 308, 350, 567, 849
BmrI ACTGGG 1 cut(s) 819
BmsI GCATC 5 cut(s) 57, 148, 273, 609, 922
BmtI GCTAGC 1 cut(s) 612
BmuI ACTGGG 1 cut(s) 819
BpiI GAAGAC 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 891
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 308, 567
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 7 cut(s) 82, 226, 531, 566, 596, 848, 912
BsaWI WCCGGW 1 cut(s) 32
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 527, 557
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 741
Bse118I RCCGGY 3 cut(s) 32, 353, 415
Bse1I ACTGG 3 cut(s) 742, 825, 874
BseBI CCWGG 2 cut(s) 350, 849
BseDI CCNNGG 7 cut(s) 82, 226, 531, 566, 596, 848, 912
BseGI GGATG 2 cut(s) 553, 937
BseLI CCNNNNNNNGG 2 cut(s) 292, 741
BseNI ACTGG 3 cut(s) 742, 825, 874
BseRI GAGGAG 4 cut(s) 62, 65, 185, 548
BseX3I CGGCCG 1 cut(s) 417
BseXI GCAGC 4 cut(s) 32, 218, 502, 629
BseYI CCCAGC 1 cut(s) 401
BsgI GTGCAG 1 cut(s) 628
Bsh1236I CGCG 3 cut(s) 84, 169, 366
Bsh1285I CGRYCG 2 cut(s) 82, 420
BshFI GGCC 5 cut(s) 353, 392, 415, 419, 734
BshTI ACCGGT 1 cut(s) 32
BsiEI CGRYCG 2 cut(s) 82, 420
BsiHKAI GWGCWC 1 cut(s) 375
BsiHKCI CYCGRG 2 cut(s) 287, 809
BsiSI CCGG 6 cut(s) 33, 237, 308, 354, 416, 566
BslFI GGGAC 1 cut(s) 583
BslI CCNNNNNNNGG 2 cut(s) 292, 741
BsmAI GTCTC 1 cut(s) 125
BsmBI CGTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 583
BsnI GGCC 5 cut(s) 353, 392, 415, 419, 734
BsoBI CYCGRG 2 cut(s) 287, 809
Bsp1286I GDGCHC 2 cut(s) 163, 375
Bsp143I GATC 4 cut(s) 53, 186, 674, 916
Bsp19I CCATGG 1 cut(s) 912
BspACI CCGC 9 cut(s) 42, 67, 82, 84, 175, 216, 219, 341, 506
BspANI GGCC 5 cut(s) 353, 392, 415, 419, 734
BspFNI CGCG 3 cut(s) 84, 169, 366
BspLI GGNNCC 3 cut(s) 160, 306, 322
BspOI GCTAGC 1 cut(s) 612
BspPI GGATC 3 cut(s) 61, 682, 924
BsrFI RCCGGY 3 cut(s) 32, 353, 415
BsrI ACTGG 3 cut(s) 742, 825, 874
BssAI RCCGGY 3 cut(s) 32, 353, 415
BssECI CCNNGG 7 cut(s) 82, 226, 531, 566, 596, 848, 912
BssMI GATC 4 cut(s) 53, 186, 674, 916
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 912
Bst2UI CCWGG 2 cut(s) 350, 849
Bst4CI ACNGT 4 cut(s) 94, 106, 480, 574
Bst6I CTCTTC 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 240
BstC8I GCNNGC 4 cut(s) 355, 417, 467, 610
BstDEI CTNAG 1 cut(s) 892
BstDSI CCRYGG 3 cut(s) 82, 226, 912
BstF5I GGATG 2 cut(s) 553, 937
BstFNI CGCG 3 cut(s) 84, 169, 366
BstHHI GCGC 2 cut(s) 171, 366
BstKTI GATC 4 cut(s) 56, 189, 677, 919
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 4 cut(s) 53, 186, 674, 916
BstMCI CGRYCG 2 cut(s) 82, 420
BstMWI GCNNNNNNNGC 6 cut(s) 237, 350, 363, 370, 512, 951
BstNI CCWGG 2 cut(s) 350, 849
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 4 cut(s) 306, 348, 565, 847
BstUI CGCG 3 cut(s) 84, 169, 366
BstV1I GCAGC 4 cut(s) 32, 218, 502, 629
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 674
BstYI RGATCY 1 cut(s) 674
BstZI CGGCCG 1 cut(s) 417
BsuI GTATCC 1 cut(s) 495
BsuRI GGCC 5 cut(s) 353, 392, 415, 419, 734
BtgI CCRYGG 3 cut(s) 82, 226, 912
BtrI CACGTC 1 cut(s) 378
BtsCI GGATG 2 cut(s) 553, 937
BtsIMutI CAGTG 2 cut(s) 645, 735
Cac8I GCNNGC 4 cut(s) 355, 417, 467, 610
CfoI GCGC 2 cut(s) 171, 366
Cfr10I RCCGGY 3 cut(s) 32, 353, 415
Cfr13I GGNCC 1 cut(s) 304
Cfr42I CCGCGG 1 cut(s) 85
CseI GACGC 2 cut(s) 16, 229
Csp6I GTAC 2 cut(s) 460, 814
CspAI ACCGGT 1 cut(s) 32
CviAII CATG 4 cut(s) 57, 281, 613, 913
CviQI GTAC 2 cut(s) 460, 814
DdeI CTNAG 1 cut(s) 892
DpnI GATC 4 cut(s) 55, 188, 676, 918
DpnII GATC 4 cut(s) 53, 186, 674, 916
DraI TTTAAA 1 cut(s) 688
EaeI YGGCCR 4 cut(s) 390, 413, 417, 732
EagI CGGCCG 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
EciI GGCGGA 4 cut(s) 56, 164, 205, 521
EclXI CGGCCG 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 912
Eco24I GRGCYC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 304
Eco52I CGGCCG 1 cut(s) 417
Eco88I CYCGRG 2 cut(s) 287, 809
EcoRII CCWGG 2 cut(s) 348, 847
EcoT14I CCWWGG 1 cut(s) 912
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 912
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 4 cut(s) 60, 284, 616, 916
FaqI GGGAC 1 cut(s) 583
FatI CATG 4 cut(s) 56, 280, 612, 912
FauNDI CATATG 1 cut(s) 655
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 8 cut(s) 43, 46, 85, 219, 232, 342, 516, 643
FokI GGATG 2 cut(s) 560, 944
FriOI GRGCYC 1 cut(s) 163
FseI GGCCGGCC 1 cut(s) 419
Fsp4HI GCNGC 8 cut(s) 43, 46, 85, 219, 232, 342, 516, 643
FspBI CTAG 4 cut(s) 143, 152, 609, 701
GlaI GCGC 2 cut(s) 170, 365
GluI GCNGC 8 cut(s) 43, 46, 85, 219, 232, 342, 516, 643
GsaI CCCAGC 1 cut(s) 405
GsuI CTGGAG 1 cut(s) 891
HaeIII GGCC 5 cut(s) 353, 392, 415, 419, 734
HapII CCGG 6 cut(s) 33, 237, 308, 354, 416, 566
HgaI GACGC 2 cut(s) 16, 229
HhaI GCGC 2 cut(s) 171, 366
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 4 cut(s) 60, 284, 616, 916
Hin6I GCGC 2 cut(s) 169, 364
HinP1I GCGC 2 cut(s) 169, 364
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 3 cut(s) 206, 562, 820
HpaII CCGG 6 cut(s) 33, 237, 308, 354, 416, 566
HphI GGTGA 6 cut(s) 22, 26, 571, 586, 593, 788
Hpy166II GTNNAC 4 cut(s) 97, 226, 271, 718
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 5 cut(s) 143, 184, 430, 635, 809
Hpy8I GTNNAC 4 cut(s) 97, 226, 271, 718
Hpy99I CGWCG 2 cut(s) 128, 272
HpyAV CCTTC 5 cut(s) 149, 286, 532, 632, 641
HpyCH4III ACNGT 4 cut(s) 94, 106, 480, 574
HpyCH4IV ACGT 2 cut(s) 377, 708
HpyCH4V TGCA 5 cut(s) 48, 264, 465, 645, 682
HpyF10VI GCNNNNNNNGC 6 cut(s) 237, 350, 363, 370, 512, 951
HpyF3I CTNAG 1 cut(s) 892
HpySE526I ACGT 2 cut(s) 377, 708
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 4 cut(s) 60, 284, 616, 916
HspAI GCGC 2 cut(s) 169, 364
KroI GCCGGC 2 cut(s) 353, 415
KroNI GCCGGC 2 cut(s) 355, 417
KspI CCGCGG 1 cut(s) 85
Kzo9I GATC 4 cut(s) 53, 186, 674, 916
LmnI GCTCC 4 cut(s) 158, 239, 295, 872
Lsp1109I GCAGC 4 cut(s) 32, 218, 502, 629
LweI GCATC 5 cut(s) 57, 148, 273, 609, 922
MaeI CTAG 4 cut(s) 143, 152, 609, 701
MaeII ACGT 2 cut(s) 377, 708
MaeIII GTNAC 1 cut(s) 28
MalI GATC 4 cut(s) 55, 188, 676, 918
MboI GATC 4 cut(s) 53, 186, 674, 916
MboII GAAGA 2 cut(s) 172, 235
MflI RGATCY 1 cut(s) 674
MhlI GDGCHC 2 cut(s) 163, 375
MluCI AATT 2 cut(s) 524, 921
MmeI TCCRAC 1 cut(s) 525
MroNI GCCGGC 2 cut(s) 353, 415
MseI TTAA 2 cut(s) 315, 687
MslI CAYNNNNRTG 3 cut(s) 617, 774, 911
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 6 cut(s) 33, 237, 308, 354, 416, 566
MspR9I CCNGG 4 cut(s) 308, 350, 567, 849
MvaI CCWGG 2 cut(s) 350, 849
MvnI CGCG 3 cut(s) 84, 169, 366
MwoI GCNNNNNNNGC 6 cut(s) 237, 350, 363, 370, 512, 951
NaeI GCCGGC 2 cut(s) 355, 417
NciI CCSGG 2 cut(s) 308, 567
NcoI CCATGG 1 cut(s) 912
NdeI CATATG 1 cut(s) 655
NdeII GATC 4 cut(s) 53, 186, 674, 916
NgoMIV GCCGGC 2 cut(s) 353, 415
NheI GCTAGC 1 cut(s) 608
NlaIII CATG 4 cut(s) 60, 284, 616, 916
NlaIV GGNNCC 3 cut(s) 160, 306, 322
NmeAIII GCCGAG 3 cut(s) 368, 556, 621
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 1 cut(s) 616
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PdiI GCCGGC 2 cut(s) 355, 417
PfeI GAWTC 3 cut(s) 206, 562, 820
PflFI GACNNNGTC 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 32
PkrI GCNGC 8 cut(s) 44, 47, 86, 220, 233, 343, 517, 644
Psp6I CCWGG 2 cut(s) 348, 847
PspFI CCCAGC 1 cut(s) 401
PspGI CCWGG 2 cut(s) 348, 847
PspN4I GGNNCC 3 cut(s) 160, 306, 322
PspPI GGNCC 1 cut(s) 304
PsuI RGATCY 1 cut(s) 674
PsyI GACNNNGTC 1 cut(s) 275
RigI GGCCGGCC 1 cut(s) 419
RsaI GTAC 2 cut(s) 461, 815
RsaNI GTAC 2 cut(s) 460, 814
RseI CAYNNNNRTG 3 cut(s) 617, 774, 911
SacII CCGCGG 1 cut(s) 85
SalI GTCGAC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 315, 687
SatI GCNGC 8 cut(s) 43, 46, 85, 219, 232, 342, 516, 643
Sau3AI GATC 4 cut(s) 53, 186, 674, 916
Sau96I GGNCC 1 cut(s) 304
ScaI AGTACT 1 cut(s) 461
ScrFI CCNGG 4 cut(s) 308, 350, 567, 849
SduI GDGCHC 2 cut(s) 163, 375
SfaNI GCATC 5 cut(s) 57, 148, 273, 609, 922
Sfr303I CCGCGG 1 cut(s) 85
SgrAI CRCCGGYG 1 cut(s) 32
SgrBI CCGCGG 1 cut(s) 85
SinI GGWCC 1 cut(s) 304
SmiMI CAYNNNNRTG 3 cut(s) 617, 774, 911
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 524, 921
SsiI CCGC 9 cut(s) 42, 67, 82, 84, 175, 216, 219, 341, 506
SspMI CTAG 4 cut(s) 143, 152, 609, 701
StyD4I CCNGG 4 cut(s) 306, 348, 565, 847
StyI CCWWGG 1 cut(s) 912
TaaI ACNGT 4 cut(s) 94, 106, 480, 574
TaiI ACGT 2 cut(s) 380, 711
TaqI TCGA 6 cut(s) 5, 78, 189, 198, 270, 494
TasI AATT 2 cut(s) 524, 921
TatI WGTACW 2 cut(s) 459, 813
TauI GCSGC 4 cut(s) 45, 87, 221, 344
TfiI GAWTC 3 cut(s) 206, 562, 820
Tru1I TTAA 2 cut(s) 315, 687
Tru9I TTAA 2 cut(s) 315, 687
TscAI CASTG 2 cut(s) 652, 742
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 4 cut(s) 45, 231, 515, 642
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 895
TspRI CASTG 2 cut(s) 652, 742
Tth111I GACNNNGTC 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 304
XapI RAATTY 1 cut(s) 524
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 270
XspI CTAG 4 cut(s) 143, 152, 609, 701
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.