Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8412031.1

Orthogroup ID

OG0003662

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1100

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8412031.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 340 bp

atcgaaaactctggcggagaaagctgcgtgggaatttgccgaggagaaggggttggatgtggttgtggtgaatccggggacggtgatgggtgatgttatatcgccgaggctcaatgctagcatgttgatgctcgtacgccttcttgaaggctgcactgaaacatatgagaacttctttatgggatctgtgcattttaaagatgtagctctagcacacgttttagtttacgagaacaaatcggccactggtaggcacatgtgcgttgaggcaatatcacattatggtgattttgtggcaaaggtagctgaactttatcccgagtacaagattcccaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

112

Amino Acids

12.48

Weight (kDa)

5.5

Isoelectric Point (pI)

17.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58490
fragaria_vesca	FvH4_3g39460
malus_domestica	MD11G1064000.v1.1 MD11G1064600.v1.1 MD11G1064700.v1.1
prunus_persica	Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.I003000_v2.0.a1
pyrus_communis	pycom11g05410 pycom11g05430 pycom11g05470 pycom11g05480
rosa_chinensis	RchiOBHm_Chr5g0071191
rosa_laevigata	RLG00000036190
rosa_multiflora	Rmu_co8412031.1_g000001 Rmu_sc0000962.1_g000032 Rmu_sc0003638.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009940
rosa_rugosa	Rorug05G0410400
rosa_samantha	Rh3DG226600 Rh3DG309400 Rh5AG466400 Rh5BG484900 Rh5CG509300 Rh5DG496200
rosa_wichuraiana	Rw4G017980 Rw5G043320 Rw6G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	15
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	33
AfaI	GTAC	2 cut(s)	136, 324
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	2 cut(s)	215, 256
AgsI	TTSAA	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	3 cut(s)	24, 207, 306
AluI	AGCT	3 cut(s)	24, 207, 306
AlwI	GGATC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	24, 151
ApoI	RAATTY	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	4 cut(s)	80, 95, 102, 297
AsuNHI	GCTAGC	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	11, 138
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	2 cut(s)	118, 210
BisI	GCNGC	2 cut(s)	25, 152
BlsI	GCNGC	2 cut(s)	26, 153
Bme1390I	CCNGG	2 cut(s)	76, 335
BmeT110I	CYCGRG	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	76, 335
BmsI	GCATC	1 cut(s)	118
BmtI	GCTAGC	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	76
BsaJI	CCNNGG	4 cut(s)	40, 75, 105, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	4 cut(s)	40, 75, 105, 333
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	11, 138
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	75
BsiWI	CGTACG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	243
BspOI	GCTAGC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	4 cut(s)	40, 75, 105, 333
BssMI	GATC	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 303
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	2 cut(s)	125, 260
BstSCI	CCNGG	2 cut(s)	74, 333
BstV1I	GCAGC	2 cut(s)	11, 138
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	2 cut(s)	154, 244
Cac8I	GCNNGC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	135, 323
CviAII	CATG	2 cut(s)	122, 257
CviJI	RGCY	6 cut(s)	24, 110, 151, 207, 243, 306
CviKI_1	RGCY	6 cut(s)	24, 110, 151, 207, 243, 306
CviQI	GTAC	2 cut(s)	135, 323
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
DraI	TTTAAA	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	241
EciI	GGCGGA	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	125, 260
FaiI	YATR	7 cut(s)	99, 123, 164, 166, 180, 258, 283
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	121, 256
FauNDI	CATATG	1 cut(s)	164
Fnu4HI	GCNGC	2 cut(s)	25, 152
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	25, 152
FspBI	CTAG	2 cut(s)	118, 210
GluI	GCNGC	2 cut(s)	25, 152
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	2 cut(s)	125, 260
HinfI	GANTC	2 cut(s)	71, 329
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	4 cut(s)	80, 95, 102, 297
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188III	TCNNGA	2 cut(s)	144, 318
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	41, 141, 150
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	154, 191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 303
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	2 cut(s)	125, 260
Kzo9I	GATC	1 cut(s)	183
LpnPI	CCDG	3 cut(s)	88, 232, 320
Lsp1109I	GCAGC	2 cut(s)	11, 138
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	118, 210
MaeII	ACGT	1 cut(s)	217
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MflI	RGATCY	1 cut(s)	183
MluCI	AATT	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	35, 100, 260
MseI	TTAA	1 cut(s)	196
MslI	CAYNNNNRTG	2 cut(s)	126, 283
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	76, 335
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	21, 303
NciI	CCSGG	1 cut(s)	76
NdeI	CATATG	1 cut(s)	164
NdeII	GATC	1 cut(s)	183
NheI	GCTAGC	1 cut(s)	117
NlaIII	CATG	2 cut(s)	125, 260
NmeAIII	GCCGAG	2 cut(s)	65, 130
NspI	RCATGY	2 cut(s)	125, 260
PciI	ACATGT	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	71, 329
Pfl23II	CGTACG	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	26, 153
PscI	ACATGT	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspLI	CGTACG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	2 cut(s)	136, 324
RsaNI	GTAC	2 cut(s)	135, 323
RseI	CAYNNNNRTG	2 cut(s)	126, 283
SaqAI	TTAA	1 cut(s)	196
SatI	GCNGC	2 cut(s)	25, 152
Sau3AI	GATC	1 cut(s)	183
ScrFI	CCNGG	2 cut(s)	76, 335
SetI	ASST	6 cut(s)	26, 209, 220, 304, 308, 339
SfaNI	GCATC	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	126, 283
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	2 cut(s)	118, 210
StyD4I	CCNGG	2 cut(s)	74, 333
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	3
TasI	AATT	1 cut(s)	33
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	71, 329
Tru1I	TTAA	1 cut(s)	196
Tru9I	TTAA	1 cut(s)	196
TscAI	CASTG	2 cut(s)	161, 251
TseI	GCWGC	2 cut(s)	24, 151
TspRI	CASTG	2 cut(s)	161, 251
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	2 cut(s)	125, 260
XspI	CTAG	2 cut(s)	118, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.