Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003638.1

Orthogroup ID

OG0003662

Physical Location & Seq

Genomic Coordinates Reverse (-)

36981 .. 41617

Gene Structure 4637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003638.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atggccgaagagaaggcaaatgaatctacagccaccagagaagtagagaaggctccgattgagcctctgcggatgcccacggtggaggagattcgcggccaagatatttggaacaactgtgtcgtgcgcagtgtcgctagtggagttatgggtggtggactagggttgatgatgggtttgtttcttggggctttagacaacccagtaatgcaagatcaaatgactggtagacagcaatttatatacacggcaaagcagatggggtcaaggagttggggttctgcaaaagcatttgcagtgatgggattcgttttctcagctgctgaatgtgttgttgaaaaggcacgggctaagcatgacacaacaaatacagttgttgcgggatgtgtcactggaggtgcattgtcagcaaaaggtggtccaaaagcagcctgtgttggttgtgctgggtttgccacattttcgggtgaggtcgtatgcgtcaccggtggaagcggctgcatcggatcatgggtcgtccgcctcctcctcgaccgcggctacaccgtccacgccaccgtcaaagacctcaaggacgacggcgagacgaagcatctagaagccctagaaggagcccaaacgcgcctccgcctcttccagatcgacctcctcgactacgattccatctccgccgcagtccacggctgctccggcgtcttccacctcgcctctccttgcatcgtcgaccaagtccatgacccccagaaggagctgttggacccggcgattaaaggaacgctgaatgttctaacggcggctaagcaggccggcgtgaagcgcgtggtgctcacgtcctccatatcggccatcattcccagccctacttggccggccgatgtcgtcaagagagaggattgctggactgatgttgagtactgcaagcagaaaggactgtggtatcctttatcgaaaactctggcggagaaagctgcgtgggaatttgccgaggagaaggggttggatgtggttgtggtgaatccggggacggtgatgggtgatgttatatcgccgaggctcaatgctagcaaaggtcagaggaagaagagggtcgctagctacaaggtgtacactctggaggggaagctgaaagggactctcaggaagagcttcaggtggctcaagcagacctgtgatagagtggtctatggccggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

397

Amino Acids

42.82

Weight (kDa)

8.72

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58490
fragaria_vesca	FvH4_3g39460
malus_domestica	MD11G1064000.v1.1 MD11G1064600.v1.1 MD11G1064700.v1.1
prunus_persica	Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.I003000_v2.0.a1
pyrus_communis	pycom11g05410 pycom11g05430 pycom11g05470 pycom11g05480
rosa_chinensis	RchiOBHm_Chr5g0071191
rosa_laevigata	RLG00000036190
rosa_multiflora	Rmu_co8412031.1_g000001 Rmu_sc0000962.1_g000032 Rmu_sc0003638.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009940
rosa_rugosa	Rorug05G0410400
rosa_samantha	Rh3DG226600 Rh3DG309400 Rh5AG466400 Rh5BG484900 Rh5CG509300 Rh5DG496200
rosa_wichuraiana	Rw4G017980 Rw5G043320 Rw6G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	128
AccI	GTMKAC	2 cut(s)	229, 723
AccII	CGCG	4 cut(s)	96, 537, 622, 819
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	6 cut(s)	3, 97, 843, 866, 870, 1186
AcsI	RAATTY	1 cut(s)	977
AcuI	CTGAAG	1 cut(s)	1132
AcyI	GRCGYC	1 cut(s)	693
AfaI	GTAC	2 cut(s)	914, 1106
AfiI	CCNNNNNNNGG	1 cut(s)	745
AgeI	ACCGGT	1 cut(s)	485
AgsI	TTSAA	1 cut(s)	338
AjiI	CACGTC	1 cut(s)	831
AjuI	GAANNNNNNNTTGG	2 cut(s)	737, 769
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	6 cut(s)	320, 751, 968, 1095, 1123, 1146
AluI	AGCT	6 cut(s)	320, 751, 968, 1095, 1123, 1146
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	323
AoxI	GGCC	7 cut(s)	3, 97, 804, 843, 866, 870, 1186
ApeKI	GCWGC	5 cut(s)	320, 428, 498, 684, 968
ApoI	RAATTY	1 cut(s)	977
AsiGI	ACCGGT	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	1145
AspLEI	GCGC	3 cut(s)	129, 624, 819
AspS9I	GGNCC	2 cut(s)	419, 757
AsuC2I	CCSGG	2 cut(s)	761, 1020
AsuHPI	GGTGA	5 cut(s)	475, 479, 1024, 1039, 1046
AsuNHI	GCTAGC	2 cut(s)	1061, 1091
AvaII	GGWCC	2 cut(s)	419, 757
BaeI	ACNNNNGTAYC	2 cut(s)	920, 953
BanII	GRGCYC	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	688
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	5 cut(s)	307, 440, 485, 671, 955
BccI	CCATC	6 cut(s)	166, 253, 295, 671, 854, 1024
BceAI	ACGGC	4 cut(s)	264, 595, 697, 807
BciVI	GTATCC	1 cut(s)	948
BcnI	CCSGG	2 cut(s)	761, 1020
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	6 cut(s)	138, 161, 596, 605, 1062, 1092
BfmI	CTRYAG	1 cut(s)	27
BfuI	GTATCC	1 cut(s)	948
BlpI	GCTNAGC	2 cut(s)	351, 798
BmcAI	AGTACT	1 cut(s)	914
Bme1390I	CCNGG	2 cut(s)	761, 1020
Bme18I	GGWCC	2 cut(s)	419, 757
BmgBI	CACGTC	1 cut(s)	831
BmgT120I	GGNCC	2 cut(s)	419, 757
BmiI	GGNNCC	3 cut(s)	54, 613, 759
BmrFI	CCNGG	2 cut(s)	761, 1020
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	4 cut(s)	63, 510, 601, 726
BmtI	GCTAGC	2 cut(s)	1065, 1095
BmuI	ACTGGG	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	688
BpmI	CTGGAG	2 cut(s)	414, 1133
Bpu1102I	GCTNAGC	2 cut(s)	351, 798
BpuEI	CTTGAG	2 cut(s)	554, 1142
BpuMI	CCSGG	2 cut(s)	761, 1020
BsaHI	GRCGYC	1 cut(s)	693
BsaJI	CCNNGG	6 cut(s)	78, 535, 679, 984, 1019, 1049
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	6 cut(s)	262, 292, 671, 701, 980, 1010
Bsc4I	CCNNNNNNNGG	1 cut(s)	745
Bse118I	RCCGGY	4 cut(s)	485, 806, 868, 1188
Bse1I	ACTGG	3 cut(s)	203, 229, 397
BseDI	CCNNGG	6 cut(s)	78, 535, 679, 984, 1019, 1049
BseGI	GGATG	3 cut(s)	78, 389, 1006
BseLI	CCNNNNNNNGG	1 cut(s)	745
BseMII	CTCAG	2 cut(s)	330, 1150
BseNI	ACTGG	3 cut(s)	203, 229, 397
BseRI	GAGGAG	5 cut(s)	101, 515, 518, 638, 1001
BseX3I	CGGCCG	1 cut(s)	870
BseXI	GCAGC	5 cut(s)	307, 440, 485, 671, 955
BseYI	CCCAGC	2 cut(s)	446, 854
Bsh1236I	CGCG	4 cut(s)	96, 537, 622, 819
Bsh1285I	CGRYCG	2 cut(s)	535, 873
BshFI	GGCC	7 cut(s)	5, 99, 806, 845, 868, 872, 1188
BshTI	ACCGGT	1 cut(s)	485
BsiEI	CGRYCG	2 cut(s)	535, 873
BsiHKAI	GWGCWC	1 cut(s)	828
BsiSI	CCGG	7 cut(s)	486, 690, 761, 807, 869, 1019, 1189
BslFI	GGGAC	2 cut(s)	1036, 1144
BslI	CCNNNNNNNGG	1 cut(s)	745
BsmAI	GTCTC	1 cut(s)	578
BsmBI	CGTCTC	1 cut(s)	578
BsmFI	GGGAC	2 cut(s)	1036, 1144
BsnI	GGCC	7 cut(s)	5, 99, 806, 845, 868, 872, 1188
Bsp1286I	GDGCHC	2 cut(s)	616, 828
Bsp1407I	TGTACA	1 cut(s)	1104
Bsp143I	GATC	3 cut(s)	214, 506, 639
Bsp1720I	GCTNAGC	2 cut(s)	351, 798
BspANI	GGCC	7 cut(s)	5, 99, 806, 845, 868, 872, 1188
BspCNI	CTCAG	2 cut(s)	329, 1149
BspFNI	CGCG	4 cut(s)	96, 537, 622, 819
BspLI	GGNNCC	3 cut(s)	54, 613, 759
BspOI	GCTAGC	2 cut(s)	1065, 1095
BspPI	GGATC	1 cut(s)	514
BspQI	GCTCTTC	1 cut(s)	1136
BsrFI	RCCGGY	4 cut(s)	485, 806, 868, 1188
BsrGI	TGTACA	1 cut(s)	1104
BsrI	ACTGG	3 cut(s)	203, 229, 397
BssAI	RCCGGY	4 cut(s)	485, 806, 868, 1188
BssECI	CCNNGG	6 cut(s)	78, 535, 679, 984, 1019, 1049
BssMI	GATC	3 cut(s)	214, 506, 639
BssNI	GRCGYC	1 cut(s)	693
Bst4CI	ACNGT	7 cut(s)	82, 119, 373, 547, 559, 933, 1027
Bst6I	CTCTTC	4 cut(s)	3, 638, 1076, 1136
BstACI	GRCGYC	1 cut(s)	693
BstAUI	TGTACA	1 cut(s)	1104
BstC8I	GCNNGC	6 cut(s)	804, 808, 870, 920, 1063, 1093
BstDEI	CTNAG	4 cut(s)	316, 351, 798, 1136
BstDSI	CCRYGG	3 cut(s)	78, 535, 679
BstF5I	GGATG	3 cut(s)	78, 389, 1006
BstFNI	CGCG	4 cut(s)	96, 537, 622, 819
BstHHI	GCGC	3 cut(s)	129, 624, 819
BstKTI	GATC	3 cut(s)	217, 509, 642
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	3 cut(s)	214, 506, 639
BstMCI	CGRYCG	2 cut(s)	535, 873
BstMWI	GCNNNNNNNGC	7 cut(s)	407, 452, 690, 803, 816, 823, 965
BstSCI	CCNGG	2 cut(s)	759, 1018
BstSFI	CTRYAG	1 cut(s)	27
BstUI	CGCG	4 cut(s)	96, 537, 622, 819
BstV1I	GCAGC	5 cut(s)	307, 440, 485, 671, 955
BstV2I	GAAGAC	1 cut(s)	688
BstZI	CGGCCG	1 cut(s)	870
BsuI	GTATCC	1 cut(s)	948
BsuRI	GGCC	7 cut(s)	5, 99, 806, 845, 868, 872, 1188
BtgI	CCRYGG	3 cut(s)	78, 535, 679
BtrI	CACGTC	1 cut(s)	831
BtsCI	GGATG	3 cut(s)	78, 389, 1006
BtsI	GCAGTG	2 cut(s)	136, 303
BtsIMutI	CAGTG	3 cut(s)	136, 303, 390
Cac8I	GCNNGC	6 cut(s)	804, 808, 870, 920, 1063, 1093
CaiI	CAGNNNCTG	1 cut(s)	323
CfoI	GCGC	3 cut(s)	129, 624, 819
Cfr10I	RCCGGY	4 cut(s)	485, 806, 868, 1188
Cfr13I	GGNCC	2 cut(s)	419, 757
Cfr42I	CCGCGG	1 cut(s)	538
CseI	GACGC	2 cut(s)	469, 682
Csp6I	GTAC	2 cut(s)	913, 1105
CspAI	ACCGGT	1 cut(s)	485
CviAII	CATG	3 cut(s)	356, 510, 734
CviQI	GTAC	2 cut(s)	913, 1105
DdeI	CTNAG	4 cut(s)	316, 351, 798, 1136
DpnI	GATC	3 cut(s)	216, 508, 641
DpnII	GATC	3 cut(s)	214, 506, 639
EaeI	YGGCCR	6 cut(s)	3, 97, 843, 866, 870, 1186
EagI	CGGCCG	1 cut(s)	870
Eam1104I	CTCTTC	4 cut(s)	3, 638, 1076, 1136
EarI	CTCTTC	4 cut(s)	3, 638, 1076, 1136
EciI	GGCGGA	4 cut(s)	509, 617, 658, 974
EclXI	CGGCCG	1 cut(s)	870
Eco24I	GRGCYC	1 cut(s)	616
Eco47I	GGWCC	2 cut(s)	419, 757
Eco52I	CGGCCG	1 cut(s)	870
Eco57I	CTGAAG	1 cut(s)	1132
EcoT38I	GRGCYC	1 cut(s)	616
Esp3I	CGTCTC	1 cut(s)	578
FaeI	CATG	3 cut(s)	359, 513, 737
FaqI	GGGAC	2 cut(s)	1036, 1144
FatI	CATG	3 cut(s)	355, 509, 733
FauI	CCCGC	1 cut(s)	373
FblI	GTMKAC	2 cut(s)	229, 723
FokI	GGATG	3 cut(s)	85, 396, 1013
FriOI	GRGCYC	1 cut(s)	616
FseI	GGCCGGCC	1 cut(s)	872
FspBI	CTAG	6 cut(s)	138, 161, 596, 605, 1062, 1092
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	3 cut(s)	128, 623, 818
GsaI	CCCAGC	2 cut(s)	450, 858
GsuI	CTGGAG	2 cut(s)	414, 1133
HaeIII	GGCC	7 cut(s)	5, 99, 806, 845, 868, 872, 1188
HapII	CCGG	7 cut(s)	486, 690, 761, 807, 869, 1019, 1189
HgaI	GACGC	2 cut(s)	469, 682
HhaI	GCGC	3 cut(s)	129, 624, 819
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	3 cut(s)	359, 513, 737
Hin6I	GCGC	3 cut(s)	127, 622, 817
HinP1I	GCGC	3 cut(s)	127, 622, 817
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HinfI	GANTC	6 cut(s)	23, 91, 306, 659, 1015, 1132
HpaII	CCGG	7 cut(s)	486, 690, 761, 807, 869, 1019, 1189
HphI	GGTGA	5 cut(s)	475, 479, 1024, 1039, 1046
Hpy166II	GTNNAC	7 cut(s)	158, 230, 550, 679, 724, 1105, 1107
Hpy188I	TCNGA	3 cut(s)	57, 506, 1074
Hpy188III	TCNNGA	5 cut(s)	596, 637, 883, 1112, 1138
Hpy8I	GTNNAC	7 cut(s)	158, 230, 550, 679, 724, 1105, 1107
Hpy99I	CGWCG	2 cut(s)	581, 725
HpyAV	CCTTC	5 cut(s)	7, 43, 602, 739, 985
HpyCH4III	ACNGT	7 cut(s)	82, 119, 373, 547, 559, 933, 1027
HpyCH4IV	ACGT	1 cut(s)	830
HpyCH4V	TGCA	7 cut(s)	211, 284, 296, 401, 501, 717, 918
HpyF10VI	GCNNNNNNNGC	7 cut(s)	407, 452, 690, 803, 816, 823, 965
HpyF3I	CTNAG	4 cut(s)	316, 351, 798, 1136
HpySE526I	ACGT	1 cut(s)	830
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	3 cut(s)	359, 513, 737
HspAI	GCGC	3 cut(s)	127, 622, 817
KroI	GCCGGC	2 cut(s)	806, 868
KroNI	GCCGGC	2 cut(s)	808, 870
KspI	CCGCGG	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	214, 506, 639
LguI	GCTCTTC	1 cut(s)	1136
LmnI	GCTCC	4 cut(s)	58, 611, 692, 748
Lsp1109I	GCAGC	5 cut(s)	307, 440, 485, 671, 955
LweI	GCATC	4 cut(s)	63, 510, 601, 726
MaeI	CTAG	6 cut(s)	138, 161, 596, 605, 1062, 1092
MaeII	ACGT	1 cut(s)	830
MaeIII	GTNAC	2 cut(s)	388, 481
MalI	GATC	3 cut(s)	216, 508, 641
MboI	GATC	3 cut(s)	214, 506, 639
MboII	GAAGA	6 cut(s)	20, 625, 688, 1090, 1093, 1153
MhlI	GDGCHC	2 cut(s)	616, 828
MluCI	AATT	2 cut(s)	236, 977
MlyI	GAGTC	1 cut(s)	1126
MmeI	TCCRAC	2 cut(s)	735, 978
MroNI	GCCGGC	2 cut(s)	806, 868
MroXI	GAANNNNTTC	1 cut(s)	1145
MseI	TTAA	1 cut(s)	768
MspA1I	CMGCKG	2 cut(s)	320, 537
MspI	CCGG	7 cut(s)	486, 690, 761, 807, 869, 1019, 1189
MspR9I	CCNGG	2 cut(s)	761, 1020
MvnI	CGCG	4 cut(s)	96, 537, 622, 819
MwoI	GCNNNNNNNGC	7 cut(s)	407, 452, 690, 803, 816, 823, 965
NaeI	GCCGGC	2 cut(s)	808, 870
NciI	CCSGG	2 cut(s)	761, 1020
NdeII	GATC	3 cut(s)	214, 506, 639
NgoMIV	GCCGGC	2 cut(s)	806, 868
NheI	GCTAGC	2 cut(s)	1061, 1091
NlaIII	CATG	3 cut(s)	359, 513, 737
NlaIV	GGNNCC	3 cut(s)	54, 613, 759
NmeAIII	GCCGAG	2 cut(s)	1009, 1074
NmuCI	GTSAC	2 cut(s)	388, 481
NsbI	TGCGCA	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	1136
PcsI	WCGNNNNNNNCGW	1 cut(s)	648
PdiI	GCCGGC	2 cut(s)	808, 870
PdmI	GAANNNNTTC	1 cut(s)	1145
PfeI	GAWTC	5 cut(s)	23, 91, 306, 659, 1015
PflFI	GACNNNGTC	1 cut(s)	728
PinAI	ACCGGT	1 cut(s)	485
PleI	GAGTC	1 cut(s)	1126
PpsI	GAGTC	1 cut(s)	1126
PspFI	CCCAGC	2 cut(s)	446, 854
PspN4I	GGNNCC	3 cut(s)	54, 613, 759
PspPI	GGNCC	2 cut(s)	419, 757
PstNI	CAGNNNCTG	1 cut(s)	323
PsyI	GACNNNGTC	1 cut(s)	728
PvuII	CAGCTG	1 cut(s)	320
RigI	GGCCGGCC	1 cut(s)	872
RsaI	GTAC	2 cut(s)	914, 1106
RsaNI	GTAC	2 cut(s)	913, 1105
SacII	CCGCGG	1 cut(s)	538
SalI	GTCGAC	1 cut(s)	722
SapI	GCTCTTC	1 cut(s)	1136
SaqAI	TTAA	1 cut(s)	768
Sau3AI	GATC	3 cut(s)	214, 506, 639
Sau96I	GGNCC	2 cut(s)	419, 757
ScaI	AGTACT	1 cut(s)	914
SchI	GAGTC	1 cut(s)	1126
ScrFI	CCNGG	2 cut(s)	761, 1020
SduI	GDGCHC	2 cut(s)	616, 828
SfaNI	GCATC	4 cut(s)	63, 510, 601, 726
SfcI	CTRYAG	1 cut(s)	27
Sfr303I	CCGCGG	1 cut(s)	538
SgrAI	CRCCGGYG	1 cut(s)	485
SgrBI	CCGCGG	1 cut(s)	538
SinI	GGWCC	2 cut(s)	419, 757
SmlI	CTYRAG	2 cut(s)	569, 1157
SmoI	CTYRAG	2 cut(s)	569, 1157
Sse9I	AATT	2 cut(s)	236, 977
SspMI	CTAG	6 cut(s)	138, 161, 596, 605, 1062, 1092
StyD4I	CCNGG	2 cut(s)	759, 1018
TaaI	ACNGT	7 cut(s)	82, 119, 373, 547, 559, 933, 1027
TaiI	ACGT	1 cut(s)	833
TaqI	TCGA	5 cut(s)	531, 642, 651, 723, 947
TasI	AATT	2 cut(s)	236, 977
TatI	WGTACW	2 cut(s)	912, 1104
TauI	GCSGC	5 cut(s)	99, 498, 540, 674, 797
TfiI	GAWTC	5 cut(s)	23, 91, 306, 659, 1015
Tru1I	TTAA	1 cut(s)	768
Tru9I	TTAA	1 cut(s)	768
TscAI	CASTG	3 cut(s)	136, 303, 397
TseFI	GTSAC	2 cut(s)	388, 481
TseI	GCWGC	5 cut(s)	320, 428, 498, 684, 968
Tsp45I	GTSAC	2 cut(s)	388, 481
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	136, 303, 397
Tth111I	GACNNNGTC	1 cut(s)	728
VpaK11BI	GGWCC	2 cut(s)	419, 757
XapI	RAATTY	1 cut(s)	977
XbaI	TCTAGA	1 cut(s)	595
XmiI	GTMKAC	2 cut(s)	229, 723
XmnI	GAANNNNTTC	1 cut(s)	1145
XspI	CTAG	6 cut(s)	138, 161, 596, 605, 1062, 1092
ZrmI	AGTACT	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.