RLG00000036190

cinnamoyl-CoA reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003662
Physical Location & Seq
Reverse (-)
77272625 .. 77275956
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036190

Sequence Viewer

Length: 1029 bp
ATGCGTCACCGGTGGAAGCGGCTGCATCGGATCATGGGTCGTCCGCCTCCTCCTCGACCGCGGCTACACCGTCCACGCCACCGTCAAAGACCTCAGTTAGTCTCCACAATCACACTCAATTTTCCACTTTGTTACACAAATGCCACTCTCACTCTCAAAATTCTTCTTCTTGCAGAGGACGACGGCGAGACGAAGCATCTAGAAGCCCTAGAAGGAGCCCAAACGCGCCTCCGCCTCTTCCAGATCGACCTCCTCGACTACGATTCCATCTCCGCCGCAGTCCACGGCTGCTCCGGCGTCTTCCACCTCGCCTCTCCTTGCATCGTCGACCAAGTCCATGAACCCCAGAAGGAGCTGTTGGACCCGGCGATTAAAGGAACGCTGAATGTTCTAGCGGCGGCTAAGCAGGCCGGCGTGAAGCGCGTGGTTCTCACGTCCTCCATCTCGGCCATCACTCCCAGCCCTACTTGGCCGGCTGATGTCGTCAAGAGTGAGGATTGCTGGACTGATGTTGAGTATTGCAAGCAGAAAGGACTGTGGTATCCTTTATCGAAAACTCTGGCGGAGAAAGCTGCGTGGGAATTTGCCAAGGAGAAGGGGTTGGATGTGGTTGTGGTGAATCCGGGGACAGTGATGGGTGATGTTATATCGCCGAGGCTCAATGCTAGCATGTTGATGCTTGTACGCCTTCTTGAAGGCTGCACTGAAACATATGAGAACTTCTTTATGGGATCTGTGCATTTTAAAGATGTAGCTCTAGCACACGTTTTAGTTTACGAGAACAAATCTGCCACTGGTAGGCACATGTGCGTTGAGGCAATATCACATTATGGTGATTTTGTGGCAAAGGTAGCTGAACTTTATCCCGAGTACAAGATTCCCAGTTTGCCAAAGGACACACAGCCTGGGTTGTTGAGGGAAAAGAATGGAGCGAAAAAGCTAATGGACTTAGGTATAGACTTCATCCCCATGGATCAAATTATCAAGGATGCTGTTGAGTGCCTAAAGAGCAAGGGATTTATTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

343

Amino Acids

38.26

Weight (kDa)

8.52

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDP_Man_Dehyd PF16363 63 - 147 1.9e-06 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 66 - 259 1.1e-14 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10 PF13460 66 - 210 4.7e-10 NAD(P)H-binding
Epimerase PF01370 70 - 264 5.2e-16 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 76 - 154 5.9e-06 Polysaccharide biosynthesis protein
NAD_binding_4 PF07993 94 - 229 1.9e-08 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 327
AccII CGCG 3 cut(s) 61, 226, 423
AclWI GGATC 3 cut(s) 38, 739, 981
AcoI YGGCCR 2 cut(s) 447, 470
AcsI RAATTY 2 cut(s) 159, 581
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 684, 872
AfiI CCNNNNNNNGG 1 cut(s) 798
AflIII ACRYGT 2 cut(s) 763, 804
AgeI ACCGGT 1 cut(s) 9
AgsI TTSAA 1 cut(s) 695
AjiI CACGTC 1 cut(s) 435
AjnI CCWGG 1 cut(s) 904
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 5 cut(s) 355, 572, 755, 854, 940
AluI AGCT 5 cut(s) 355, 572, 755, 854, 940
Alw26I GTCTC 2 cut(s) 106, 182
AlwI GGATC 3 cut(s) 38, 739, 981
Ama87I CYCGRG 1 cut(s) 866
AoxI GGCC 3 cut(s) 408, 447, 470
ApeKI GCWGC 4 cut(s) 22, 288, 572, 699
ApoI RAATTY 2 cut(s) 159, 581
AsiGI ACCGGT 1 cut(s) 9
AspLEI GCGC 2 cut(s) 228, 423
AspS9I GGNCC 1 cut(s) 361
AsuC2I CCSGG 2 cut(s) 365, 624
AsuHPI GGTGA 3 cut(s) 628, 650, 845
AsuNHI GCTAGC 1 cut(s) 665
AvaI CYCGRG 1 cut(s) 866
AvaII GGWCC 1 cut(s) 361
BaeI ACNNNNGTAYC 2 cut(s) 524, 557
BanII GRGCYC 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 292
BbvI GCAGC 4 cut(s) 9, 275, 559, 686
BccI CCATC 4 cut(s) 275, 449, 458, 628
BceAI ACGGC 2 cut(s) 199, 301
BciT130I CCWGG 1 cut(s) 906
BciVI GTATCC 1 cut(s) 552
BcnI CCSGG 2 cut(s) 365, 624
BcoDI GTCTC 2 cut(s) 106, 182
BfaI CTAG 5 cut(s) 200, 209, 392, 666, 758
BfuI GTATCC 1 cut(s) 552
BisI GCNGC 9 cut(s) 20, 23, 62, 276, 289, 396, 399, 573, 700
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 9 cut(s) 21, 24, 63, 277, 290, 397, 400, 574, 701
Bme1390I CCNGG 3 cut(s) 365, 624, 906
Bme18I GGWCC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 866
BmgBI CACGTC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 2 cut(s) 217, 363
BmrFI CCNGG 3 cut(s) 365, 624, 906
BmrI ACTGGG 1 cut(s) 876
BmsI GCATC 5 cut(s) 34, 205, 330, 666, 979
BmtI GCTAGC 1 cut(s) 669
BmuI ACTGGG 1 cut(s) 876
BpiI GAAGAC 1 cut(s) 292
Bpu1102I GCTNAGC 1 cut(s) 402
BpuMI CCSGG 2 cut(s) 365, 624
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 7 cut(s) 59, 283, 588, 623, 653, 905, 969
BsaWI WCCGGW 1 cut(s) 9
BsaXI ACNNNNNCTCC 4 cut(s) 275, 305, 584, 614
Bsc4I CCNNNNNNNGG 1 cut(s) 798
Bse118I RCCGGY 3 cut(s) 9, 410, 472
Bse1I ACTGG 2 cut(s) 799, 882
BseBI CCWGG 1 cut(s) 906
BseDI CCNNGG 7 cut(s) 59, 283, 588, 623, 653, 905, 969
BseGI GGATG 3 cut(s) 610, 963, 994
BseLI CCNNNNNNNGG 1 cut(s) 798
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 2 cut(s) 799, 882
BseRI GAGGAG 3 cut(s) 39, 42, 242
BseXI GCAGC 4 cut(s) 9, 275, 559, 686
BseYI CCCAGC 1 cut(s) 458
BsgI GTGCAG 1 cut(s) 685
Bsh1236I CGCG 3 cut(s) 61, 226, 423
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 3 cut(s) 410, 449, 472
BshTI ACCGGT 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 866
BsiSI CCGG 6 cut(s) 10, 294, 365, 411, 473, 623
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 1 cut(s) 798
BsmAI GTCTC 2 cut(s) 106, 182
BsmBI CGTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 640
BsnI GGCC 3 cut(s) 410, 449, 472
BsoBI CYCGRG 1 cut(s) 866
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 4 cut(s) 30, 243, 731, 973
Bsp1720I GCTNAGC 1 cut(s) 402
Bsp19I CCATGG 1 cut(s) 969
BspANI GGCC 3 cut(s) 410, 449, 472
BspCNI CTCAG 1 cut(s) 106
BspFNI CGCG 3 cut(s) 61, 226, 423
BspLI GGNNCC 2 cut(s) 217, 363
BspOI GCTAGC 1 cut(s) 669
BspPI GGATC 3 cut(s) 38, 739, 981
BsrFI RCCGGY 3 cut(s) 9, 410, 472
BsrI ACTGG 2 cut(s) 799, 882
BssAI RCCGGY 3 cut(s) 9, 410, 472
BssECI CCNNGG 7 cut(s) 59, 283, 588, 623, 653, 905, 969
BssMI GATC 4 cut(s) 30, 243, 731, 973
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 588, 969
Bst2UI CCWGG 1 cut(s) 906
Bst4CI ACNGT 4 cut(s) 71, 83, 537, 631
Bst6I CTCTTC 1 cut(s) 242
BstACI GRCGYC 1 cut(s) 297
BstC8I GCNNGC 5 cut(s) 408, 412, 474, 524, 667
BstDEI CTNAG 3 cut(s) 93, 402, 949
BstDSI CCRYGG 3 cut(s) 59, 283, 969
BstF5I GGATG 3 cut(s) 610, 963, 994
BstFNI CGCG 3 cut(s) 61, 226, 423
BstHHI GCGC 2 cut(s) 228, 423
BstKTI GATC 4 cut(s) 33, 246, 734, 976
BstMAI GTCTC 2 cut(s) 106, 182
BstMBI GATC 4 cut(s) 30, 243, 731, 973
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 6 cut(s) 294, 407, 420, 569, 851, 1008
BstNI CCWGG 1 cut(s) 906
BstNSI RCATGY 2 cut(s) 673, 808
BstSCI CCNGG 3 cut(s) 363, 622, 904
BstUI CGCG 3 cut(s) 61, 226, 423
BstV1I GCAGC 4 cut(s) 9, 275, 559, 686
BstV2I GAAGAC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 731
BstYI RGATCY 1 cut(s) 731
BsuI GTATCC 1 cut(s) 552
BsuRI GGCC 3 cut(s) 410, 449, 472
BtgI CCRYGG 3 cut(s) 59, 283, 969
BtrI CACGTC 1 cut(s) 435
BtsCI GGATG 3 cut(s) 610, 963, 994
BtsIMutI CAGTG 3 cut(s) 636, 702, 792
Cac8I GCNNGC 5 cut(s) 408, 412, 474, 524, 667
CfoI GCGC 2 cut(s) 228, 423
Cfr10I RCCGGY 3 cut(s) 9, 410, 472
Cfr13I GGNCC 1 cut(s) 361
Cfr42I CCGCGG 1 cut(s) 62
CseI GACGC 1 cut(s) 286
Csp6I GTAC 2 cut(s) 683, 871
CspAI ACCGGT 1 cut(s) 9
CviAII CATG 5 cut(s) 34, 338, 670, 805, 970
CviQI GTAC 2 cut(s) 683, 871
DdeI CTNAG 3 cut(s) 93, 402, 949
DpnI GATC 4 cut(s) 32, 245, 733, 975
DpnII GATC 4 cut(s) 30, 243, 731, 973
DraI TTTAAA 1 cut(s) 745
EaeI YGGCCR 2 cut(s) 447, 470
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
EciI GGCGGA 4 cut(s) 33, 221, 262, 578
Eco130I CCWWGG 2 cut(s) 588, 969
Eco24I GRGCYC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 866
EcoRII CCWGG 1 cut(s) 904
EcoT14I CCWWGG 2 cut(s) 588, 969
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 2 cut(s) 588, 969
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 5 cut(s) 37, 341, 673, 808, 973
FaqI GGGAC 1 cut(s) 640
FatI CATG 5 cut(s) 33, 337, 669, 804, 969
FauNDI CATATG 1 cut(s) 712
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 9 cut(s) 20, 23, 62, 276, 289, 396, 399, 573, 700
FokI GGATG 3 cut(s) 617, 950, 1001
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 9 cut(s) 20, 23, 62, 276, 289, 396, 399, 573, 700
FspBI CTAG 5 cut(s) 200, 209, 392, 666, 758
GlaI GCGC 2 cut(s) 227, 422
GluI GCNGC 9 cut(s) 20, 23, 62, 276, 289, 396, 399, 573, 700
GsaI CCCAGC 1 cut(s) 462
HaeIII GGCC 3 cut(s) 410, 449, 472
HapII CCGG 6 cut(s) 10, 294, 365, 411, 473, 623
HgaI GACGC 1 cut(s) 286
HhaI GCGC 2 cut(s) 228, 423
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 5 cut(s) 37, 341, 673, 808, 973
Hin6I GCGC 2 cut(s) 226, 421
HinP1I GCGC 2 cut(s) 226, 421
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 3 cut(s) 263, 619, 877
HpaII CCGG 6 cut(s) 10, 294, 365, 411, 473, 623
HphI GGTGA 3 cut(s) 628, 650, 845
Hpy166II GTNNAC 4 cut(s) 74, 283, 328, 775
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 5 cut(s) 200, 241, 487, 692, 866
Hpy8I GTNNAC 4 cut(s) 74, 283, 328, 775
Hpy99I CGWCG 2 cut(s) 185, 329
HpyAV CCTTC 5 cut(s) 206, 343, 589, 689, 698
HpyCH4III ACNGT 4 cut(s) 71, 83, 537, 631
HpyCH4IV ACGT 2 cut(s) 434, 765
HpyCH4V TGCA 6 cut(s) 25, 173, 321, 522, 702, 739
HpyF10VI GCNNNNNNNGC 6 cut(s) 294, 407, 420, 569, 851, 1008
HpyF3I CTNAG 3 cut(s) 93, 402, 949
HpySE526I ACGT 2 cut(s) 434, 765
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 5 cut(s) 37, 341, 673, 808, 973
HspAI GCGC 2 cut(s) 226, 421
KroI GCCGGC 2 cut(s) 410, 472
KroNI GCCGGC 2 cut(s) 412, 474
KspI CCGCGG 1 cut(s) 62
Kzo9I GATC 4 cut(s) 30, 243, 731, 973
LmnI GCTCC 4 cut(s) 215, 296, 352, 929
Lsp1109I GCAGC 4 cut(s) 9, 275, 559, 686
LweI GCATC 5 cut(s) 34, 205, 330, 666, 979
MaeI CTAG 5 cut(s) 200, 209, 392, 666, 758
MaeII ACGT 2 cut(s) 434, 765
MaeIII GTNAC 2 cut(s) 5, 131
MalI GATC 4 cut(s) 32, 245, 733, 975
MboI GATC 4 cut(s) 30, 243, 731, 973
MboII GAAGA 4 cut(s) 155, 158, 229, 292
MflI RGATCY 1 cut(s) 731
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 4 cut(s) 118, 159, 581, 978
MmeI TCCRAC 2 cut(s) 339, 582
MroNI GCCGGC 2 cut(s) 410, 472
MseI TTAA 2 cut(s) 372, 744
MslI CAYNNNNRTG 3 cut(s) 674, 831, 968
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 6 cut(s) 10, 294, 365, 411, 473, 623
MspR9I CCNGG 3 cut(s) 365, 624, 906
MvaI CCWGG 1 cut(s) 906
MvnI CGCG 3 cut(s) 61, 226, 423
MwoI GCNNNNNNNGC 6 cut(s) 294, 407, 420, 569, 851, 1008
NaeI GCCGGC 2 cut(s) 412, 474
NciI CCSGG 2 cut(s) 365, 624
NcoI CCATGG 1 cut(s) 969
NdeI CATATG 1 cut(s) 712
NdeII GATC 4 cut(s) 30, 243, 731, 973
NgoMIV GCCGGC 2 cut(s) 410, 472
NheI GCTAGC 1 cut(s) 665
NlaIII CATG 5 cut(s) 37, 341, 673, 808, 973
NlaIV GGNNCC 2 cut(s) 217, 363
NmeAIII GCCGAG 2 cut(s) 425, 678
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 2 cut(s) 673, 808
PciI ACATGT 1 cut(s) 804
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdiI GCCGGC 2 cut(s) 412, 474
PfeI GAWTC 3 cut(s) 263, 619, 877
PflFI GACNNNGTC 1 cut(s) 332
PinAI ACCGGT 1 cut(s) 9
PkrI GCNGC 9 cut(s) 21, 24, 63, 277, 290, 397, 400, 574, 701
PscI ACATGT 1 cut(s) 804
Psp6I CCWGG 1 cut(s) 904
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 1 cut(s) 904
PspN4I GGNNCC 2 cut(s) 217, 363
PspPI GGNCC 1 cut(s) 361
PsuI RGATCY 1 cut(s) 731
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 2 cut(s) 684, 872
RsaNI GTAC 2 cut(s) 683, 871
RseI CAYNNNNRTG 3 cut(s) 674, 831, 968
SacII CCGCGG 1 cut(s) 62
SalI GTCGAC 1 cut(s) 326
SaqAI TTAA 2 cut(s) 372, 744
SatI GCNGC 9 cut(s) 20, 23, 62, 276, 289, 396, 399, 573, 700
Sau3AI GATC 4 cut(s) 30, 243, 731, 973
Sau96I GGNCC 1 cut(s) 361
ScrFI CCNGG 3 cut(s) 365, 624, 906
SduI GDGCHC 1 cut(s) 220
SfaNI GCATC 5 cut(s) 34, 205, 330, 666, 979
Sfr303I CCGCGG 1 cut(s) 62
SgrAI CRCCGGYG 1 cut(s) 9
SgrBI CCGCGG 1 cut(s) 62
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 3 cut(s) 674, 831, 968
Sse9I AATT 4 cut(s) 118, 159, 581, 978
SspMI CTAG 5 cut(s) 200, 209, 392, 666, 758
StyD4I CCNGG 3 cut(s) 363, 622, 904
StyI CCWWGG 2 cut(s) 588, 969
TaaI ACNGT 4 cut(s) 71, 83, 537, 631
TaiI ACGT 2 cut(s) 437, 768
TaqI TCGA 5 cut(s) 55, 246, 255, 327, 551
TasI AATT 4 cut(s) 118, 159, 581, 978
TatI WGTACW 1 cut(s) 870
TauI GCSGC 5 cut(s) 22, 64, 278, 398, 401
TfiI GAWTC 3 cut(s) 263, 619, 877
Tru1I TTAA 2 cut(s) 372, 744
Tru9I TTAA 2 cut(s) 372, 744
TscAI CASTG 3 cut(s) 636, 709, 799
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 4 cut(s) 22, 288, 572, 699
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 354, 952
TspRI CASTG 3 cut(s) 636, 709, 799
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 2 cut(s) 159, 581
XbaI TCTAGA 1 cut(s) 199
XceI RCATGY 2 cut(s) 673, 808
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 5 cut(s) 200, 209, 392, 666, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.