Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003662

Physical Location & Seq

Genomic Coordinates Reverse (-)

77461668 .. 77464770

Gene Structure 3103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG484900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATGATTCAATTGTGTCTACAGAAGGAGCTGTTGGACCCGGCGATTAAAGGAACGCTGAATGTTCTAACGGCGGCTAAGCAGGCCGGCGTGAAGCGCGTGGTGCTCACGTCCTCCGTCTCGGCCATCACTCCCAGCCCTACTTGGCCCGCCGATGTCGTCAAGAGAGAGGATTGCTGGACTGATGTTGAGTACTGCAAGCAGAAAGGACTGTGGTATCCTTTATCGAAAACTCTGGCGGAGAAAGCTGCGTGGGAATTTGCCGAGGAGAAGGGGTTGGATGTGGTTGTGGTGAATCCGGGGACGGTGATGGGTGATGTTATATCGCCGAGGCTCAATGCTAGCATGTTGATGCTCGTACGCCTTCTTGAAGGCTGCACTGAAACATATGAGAACTTCTTTATGGGATCTGTGCATTTTAAAGATGTAGCTCTAGCACACGTTTTAGTTTACGAGAACAAATCGGCCACTGGTAGGCACATGTGCGTTGAGGCAATATCACATTATGGTGATTTTGTGGCAAAGGTAGCTGAACTTTATCCCGAGTACAAGATTCCCAGTTTGCCAAAGGACACACAGCCTGGGTTGTTGAGGGAAAAGACTGGAGCGAAAAAGCTAATGGACTTAGGTATAGACTTCATCCCCATGGATCAAATTATCAAGGATGCTGTTGAGTGCCTAAAGAGCAAGGGATTTATTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

234

Amino Acids

25.93

Weight (kDa)

6.12

Isoelectric Point (pI)

27.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	9 - 122	4.5e-07	Male sterility protein
3Beta_HSD	PF01073	10 - 151	9.1e-09	3-beta hydroxysteroid dehydrogenase/isomerase family
Epimerase	PF01370	11 - 158	4.2e-10	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58490
fragaria_vesca	FvH4_3g39460
malus_domestica	MD11G1064000.v1.1 MD11G1064600.v1.1 MD11G1064700.v1.1
prunus_persica	Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051200_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051300_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.6G051400_v2.0.a1 Prupe.I003000_v2.0.a1
pyrus_communis	pycom11g05410 pycom11g05430 pycom11g05470 pycom11g05480
rosa_chinensis	RchiOBHm_Chr5g0071191
rosa_laevigata	RLG00000036190
rosa_multiflora	Rmu_co8412031.1_g000001 Rmu_sc0000962.1_g000032 Rmu_sc0003638.1_g000006
rosa_roxburghii	Rroxscaffold_1G00009940
rosa_rugosa	Rorug05G0410400
rosa_samantha	Rh3DG226600 Rh3DG309400 Rh5AG466400 Rh5BG484900 Rh5CG509300 Rh5DG496200
rosa_wichuraiana	Rw4G017980 Rw5G043320 Rw6G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	74, 150, 239
AclWI	GGATC	2 cut(s)	415, 657
AcoI	YGGCCR	2 cut(s)	123, 465
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	3 cut(s)	194, 360, 548
AfiI	CCNNNNNNNGG	1 cut(s)	474
AflIII	ACRYGT	2 cut(s)	439, 480
AgsI	TTSAA	2 cut(s)	11, 371
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	580
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	5 cut(s)	31, 248, 431, 530, 616
AluI	AGCT	5 cut(s)	31, 248, 431, 530, 616
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	2 cut(s)	415, 657
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	4 cut(s)	84, 123, 146, 465
ApeKI	GCWGC	2 cut(s)	248, 375
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	37, 147
AsuC2I	CCSGG	2 cut(s)	41, 300
AsuHPI	GGTGA	4 cut(s)	304, 319, 326, 521
AsuNHI	GCTAGC	1 cut(s)	341
AvaI	CYCGRG	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	37
BaeI	ACNNNNGTAYC	2 cut(s)	200, 233
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	235, 362
BccI	CCATC	2 cut(s)	134, 304
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	582
BciVI	GTATCC	1 cut(s)	228
BcnI	CCSGG	2 cut(s)	41, 300
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	2 cut(s)	342, 434
BfmI	CTRYAG	1 cut(s)	20
BfuI	GTATCC	1 cut(s)	228
BisI	GCNGC	3 cut(s)	75, 249, 376
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	3 cut(s)	76, 250, 377
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	3 cut(s)	41, 300, 582
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	37, 147
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	3 cut(s)	41, 300, 582
BmrI	ACTGGG	1 cut(s)	552
BmsI	GCATC	2 cut(s)	342, 655
BmtI	GCTAGC	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	78
BpuMI	CCSGG	2 cut(s)	41, 300
BsaJI	CCNNGG	5 cut(s)	264, 299, 329, 581, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	3 cut(s)	475, 558, 607
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	5 cut(s)	264, 299, 329, 581, 645
BseGI	GGATG	3 cut(s)	286, 639, 670
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseNI	ACTGG	3 cut(s)	475, 558, 607
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	235, 362
BseYI	CCCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	4 cut(s)	86, 125, 148, 467
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	3 cut(s)	41, 87, 299
BsiWI	CGTACG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	1 cut(s)	124
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	4 cut(s)	86, 125, 148, 467
BsoBI	CYCGRG	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	407, 649
Bsp1720I	GCTNAGC	1 cut(s)	78
Bsp19I	CCATGG	1 cut(s)	645
BspACI	CCGC	3 cut(s)	74, 150, 239
BspANI	GGCC	4 cut(s)	86, 125, 148, 467
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	39
BspOI	GCTAGC	1 cut(s)	345
BspPI	GGATC	2 cut(s)	415, 657
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	3 cut(s)	475, 558, 607
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	5 cut(s)	264, 299, 329, 581, 645
BssMI	GATC	2 cut(s)	407, 649
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	213, 307
BstC8I	GCNNGC	5 cut(s)	84, 88, 150, 200, 343
BstDEI	CTNAG	2 cut(s)	78, 625
BstDSI	CCRYGG	1 cut(s)	645
BstF5I	GGATG	3 cut(s)	286, 639, 670
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	410, 652
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	407, 649
BstMWI	GCNNNNNNNGC	6 cut(s)	83, 96, 103, 245, 527, 684
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	2 cut(s)	349, 484
BstSCI	CCNGG	3 cut(s)	39, 298, 580
BstSFI	CTRYAG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	235, 362
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	4 cut(s)	86, 125, 148, 467
BtgI	CCRYGG	1 cut(s)	645
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	3 cut(s)	286, 639, 670
BtsIMutI	CAGTG	2 cut(s)	378, 468
Cac8I	GCNNGC	5 cut(s)	84, 88, 150, 200, 343
CfoI	GCGC	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	37, 147
Csp6I	GTAC	3 cut(s)	193, 359, 547
CviAII	CATG	3 cut(s)	346, 481, 646
CviQI	GTAC	3 cut(s)	193, 359, 547
DdeI	CTNAG	2 cut(s)	78, 625
DpnI	GATC	2 cut(s)	409, 651
DpnII	GATC	2 cut(s)	407, 649
DraI	TTTAAA	1 cut(s)	421
EaeI	YGGCCR	2 cut(s)	123, 465
EciI	GGCGGA	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	3 cut(s)	349, 484, 649
FaiI	YATR	9 cut(s)	323, 347, 388, 390, 404, 482, 507, 632, 647
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	3 cut(s)	345, 480, 645
FauI	CCCGC	1 cut(s)	157
FauNDI	CATATG	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	3 cut(s)	75, 249, 376
FokI	GGATG	3 cut(s)	293, 626, 677
Fsp4HI	GCNGC	3 cut(s)	75, 249, 376
FspBI	CTAG	2 cut(s)	342, 434
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	3 cut(s)	75, 249, 376
GsaI	CCCAGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	4 cut(s)	86, 125, 148, 467
HapII	CCGG	3 cut(s)	41, 87, 299
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	349, 484, 649
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	7, 295, 553
HpaII	CCGG	3 cut(s)	41, 87, 299
HphI	GGTGA	4 cut(s)	304, 319, 326, 521
Hpy166II	GTNNAC	2 cut(s)	20, 451
Hpy188III	TCNNGA	3 cut(s)	163, 368, 542
Hpy8I	GTNNAC	2 cut(s)	20, 451
HpyAV	CCTTC	4 cut(s)	19, 265, 365, 374
HpyCH4III	ACNGT	2 cut(s)	213, 307
HpyCH4IV	ACGT	2 cut(s)	110, 441
HpyCH4V	TGCA	3 cut(s)	198, 378, 415
HpyF10VI	GCNNNNNNNGC	6 cut(s)	83, 96, 103, 245, 527, 684
HpyF3I	CTNAG	2 cut(s)	78, 625
HpySE526I	ACGT	2 cut(s)	110, 441
Hsp92II	CATG	3 cut(s)	349, 484, 649
HspAI	GCGC	1 cut(s)	97
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	407, 649
LmnI	GCTCC	2 cut(s)	28, 605
Lsp1109I	GCAGC	2 cut(s)	235, 362
LweI	GCATC	2 cut(s)	342, 655
MaeI	CTAG	2 cut(s)	342, 434
MaeII	ACGT	2 cut(s)	110, 441
MalI	GATC	2 cut(s)	409, 651
MboI	GATC	2 cut(s)	407, 649
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	3 cut(s)	11, 257, 654
MmeI	TCCRAC	2 cut(s)	15, 258
MnlI	CCTC	6 cut(s)	124, 163, 259, 324, 484, 585
MroNI	GCCGGC	1 cut(s)	86
MseI	TTAA	2 cut(s)	48, 420
MslI	CAYNNNNRTG	3 cut(s)	350, 507, 644
MspI	CCGG	3 cut(s)	41, 87, 299
MspR9I	CCNGG	3 cut(s)	41, 300, 582
MunI	CAATTG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	582
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	6 cut(s)	83, 96, 103, 245, 527, 684
NaeI	GCCGGC	1 cut(s)	88
NciI	CCSGG	2 cut(s)	41, 300
NcoI	CCATGG	1 cut(s)	645
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	2 cut(s)	407, 649
NgoMIV	GCCGGC	1 cut(s)	86
NheI	GCTAGC	1 cut(s)	341
NlaIII	CATG	3 cut(s)	349, 484, 649
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	3 cut(s)	101, 289, 354
NspI	RCATGY	2 cut(s)	349, 484
PciI	ACATGT	1 cut(s)	480
PdiI	GCCGGC	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	7, 295, 553
Pfl23II	CGTACG	1 cut(s)	358
PkrI	GCNGC	3 cut(s)	76, 250, 377
PscI	ACATGT	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	580
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	580
PspLI	CGTACG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	37, 147
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	3 cut(s)	194, 360, 548
RsaNI	GTAC	3 cut(s)	193, 359, 547
RseI	CAYNNNNRTG	3 cut(s)	350, 507, 644
SaqAI	TTAA	2 cut(s)	48, 420
SatI	GCNGC	3 cut(s)	75, 249, 376
Sau3AI	GATC	2 cut(s)	407, 649
Sau96I	GGNCC	2 cut(s)	37, 147
ScaI	AGTACT	1 cut(s)	194
ScrFI	CCNGG	3 cut(s)	41, 300, 582
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	9 cut(s)	33, 113, 250, 433, 444, 528, 532, 618, 631
SfaNI	GCATC	2 cut(s)	342, 655
SfcI	CTRYAG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	3 cut(s)	350, 507, 644
Sse9I	AATT	3 cut(s)	11, 257, 654
SsiI	CCGC	3 cut(s)	74, 150, 239
SspMI	CTAG	2 cut(s)	342, 434
StyD4I	CCNGG	3 cut(s)	39, 298, 580
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	2 cut(s)	213, 307
TaiI	ACGT	2 cut(s)	113, 444
TaqI	TCGA	1 cut(s)	227
TasI	AATT	3 cut(s)	11, 257, 654
TatI	WGTACW	2 cut(s)	192, 546
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	3 cut(s)	7, 295, 553
Tru1I	TTAA	2 cut(s)	48, 420
Tru9I	TTAA	2 cut(s)	48, 420
TscAI	CASTG	2 cut(s)	385, 475
TseI	GCWGC	2 cut(s)	248, 375
TspDTI	ATGAA	1 cut(s)	628
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	385, 475
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	2 cut(s)	349, 484
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	2 cut(s)	342, 434
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.