Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003420

Physical Location & Seq

Genomic Coordinates Reverse (-)

29531300 .. 29535130

Gene Structure 3831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G342800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGGAGTACCGGTGGACATGACTACGGTGCATACACCTATGAGAACCTCGAGAGGGAACCTTATTGGCCTTCAGAAAAGCTTCGAATTTCCATTACTGGGGCAGGTGGCTTTATTGCCTCACACATTGCTCGGAGATTGAAGAATGAGGGCCATTACATTATTGCTTCTGATTGGAAGAAGAACGAGCACATGACTGAAGACATGTTCTGTCATGAATTCCATCTCGTTGACCTTAGGGTTATGGATAATTGCTTGAAGGTTACCAAGAATGTTGACCATGTGTTCAACCTCGCTGCCGATATGGGTGGGATGGGCTTCATCCAGTCCAACCATTCTGTCATTTTTTACAATAATACTATGATTAGCTTCAACATGGTGGAAGCTGCTAGAATCAATGGAGTGAAGAGGTTTTTCTATGCTTCTAGTGCTTGCATTTACCCTGAGTTTAAGCAGCTGGAAACCAATGTGAGCTTGAAGGAGTCTGATGCCTGGCCTGCAGAGCCTCAAGATGCCTATGGCTTAGAGAAGCTTGCAACTGAGGAGTTGTGCAAGCACTACACAAAGGACTTTGGAATTGAGTGTCGTATTGGAAGGTTCCATAACATTTATGGTCCTTTTGGAACCTGGAAAGGTGGGAGGGAGAAGGCACCTGCTGCTTTTTGCAGAAAGACTCTCACTTCCACTGATAAGTTTGAGATGTGGGGAGATGGACTTCAGACTCGATCCTTCACCTTCATCGATGAATGTGTAGAAGGTGTACTTCGGTTGACAAAGTCTGACTTCCGTGAGCCAGTGAATATTGGAAGTGACGAGATGGTCAGCATGAATGAGATGGCGGAGATAGTTCTTAGCTTTGAGGATAAGAAGCTGCCTATCCAGCACATTCCTGGGCCAGAGGGTGTCCGTGGTCGTAACTCAGACAACACACTGATTAAAGAGAAACTTGGCTGGGCTCCCACCATGAGGTTGAAGGATGGGTTGAGAATTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAGAAGGCACAAGGCACTGACCTGTCGAATTATGGGTCATCTAAGGTGGTGGGAACCCAAGCCCCAGTTCAACTTGGTTCGCTACGTGCTGCTGATGGCAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko00520 ko01100 ko01110 map00053 map00520 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

377

Amino Acids

42.58

Weight (kDa)

6.05

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28840 AT5G28840
fragaria_vesca	FvH4_6g02980
malus_domestica	MD04G1224100.v1.1 MD04G1224200.v1.1 MD12G1240900.v1.1
prunus_persica	Prupe.1G025100_v2.0.a1 Prupe.1G025100_v2.0.a1 Prupe.6G342800_v2.0.a1
pyrus_communis	pycom04g19750
rosa_chinensis	RchiOBHm_Chr3g0451161 RchiOBHm_Chr4g0388911
rosa_laevigata	RLG00000010008 RLG00000010011 RLG00000025681 RLG00000025682
rosa_multiflora	Rmu_co8299443.1_g000001 Rmu_sc0005486.1_g000010 Rmu_ssc0000028.1_g000003
rosa_roxburghii	Rroxscaffold_5G00335220 Rroxscaffold_6G00428630
rosa_rugosa	Rorug02G0632400 Rorug02G0632500 Rorug03G0321000 Rorug03G0321000 Rorug03G0321100
rosa_samantha	Rh3AG034900 Rh3BG035300 Rh3CG033800 Rh3CG033900 Rh3DG034900 Rh4BG018800 Rh4CG028600 Rh4DG019300
rosa_wichuraiana	Rw3G002560 Rw4G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	95, 661
AasI	GACNNNNNNGTC	1 cut(s)	818
Acc36I	ACCTGC	2 cut(s)	95, 661
AccB1I	GGYRCC	1 cut(s)	649
AciI	CCGC	1 cut(s)	839
AclWI	GGATC	2 cut(s)	720, 1010
AcsI	RAATTY	2 cut(s)	87, 218
AcuI	CTGAAG	3 cut(s)	57, 219, 701
AfaI	GTAC	2 cut(s)	10, 762
AfiI	CCNNNNNNNGG	3 cut(s)	55, 99, 966
AflIII	ACRYGT	1 cut(s)	204
AgeI	ACCGGT	1 cut(s)	11
AgsI	TTSAA	7 cut(s)	142, 259, 289, 373, 478, 973, 1094
AjnI	CCWGG	3 cut(s)	491, 626, 889
AjuI	GAANNNNNNNTTGG	2 cut(s)	1074, 1106
AluBI	AGCT	8 cut(s)	82, 369, 386, 457, 474, 532, 855, 871
AluI	AGCT	8 cut(s)	82, 369, 386, 457, 474, 532, 855, 871
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	720, 1010
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	4 cut(s)	68, 151, 494, 893
ApeKI	GCWGC	6 cut(s)	296, 386, 454, 656, 871, 1112
ApoI	RAATTY	2 cut(s)	87, 218
ArsI	GACNNNNNNTTYG	2 cut(s)	1043, 1075
AsiGI	ACCGGT	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	81
AspS9I	GGNCC	3 cut(s)	151, 614, 893
AsuHPI	GGTGA	1 cut(s)	724
AsuII	TTCGAA	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	614
AxyI	CCTNAGG	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	958
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	6 cut(s)	283, 373, 466, 643, 858, 1099
BccI	CCATC	7 cut(s)	231, 307, 704, 811, 829, 971, 1112
BciT130I	CCWGG	3 cut(s)	493, 628, 891
BfaI	CTAG	2 cut(s)	390, 426
BfmI	CTRYAG	1 cut(s)	498
BfuAI	ACCTGC	2 cut(s)	95, 661
BisI	GCNGC	6 cut(s)	297, 387, 455, 657, 872, 1113
BlsI	GCNGC	6 cut(s)	298, 388, 456, 658, 873, 1114
Bme1390I	CCNGG	3 cut(s)	493, 628, 891
Bme18I	GGWCC	1 cut(s)	614
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	3 cut(s)	151, 614, 893
BmiI	GGNNCC	6 cut(s)	60, 599, 625, 651, 957, 1078
BmrFI	CCNGG	3 cut(s)	493, 628, 891
BmrI	ACTGGG	2 cut(s)	108, 1082
BmsI	GCATC	2 cut(s)	478, 502
BmuI	ACTGGG	2 cut(s)	108, 1082
BpiI	GAAGAC	1 cut(s)	207
Bpu14I	TTCGAA	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	492
Bsa29I	ATCGAT	1 cut(s)	741
BsaAI	YACGTR	1 cut(s)	1109
BsaJI	CCNNGG	2 cut(s)	890, 907
BsaWI	WCCGGW	1 cut(s)	11
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 99, 966
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	4 cut(s)	103, 325, 794, 1088
Bse21I	CCTNAGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	3 cut(s)	493, 628, 891
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	2 cut(s)	890, 907
BseGI	GGATG	3 cut(s)	318, 321, 982
BseLI	CCNNNNNNNGG	3 cut(s)	55, 99, 966
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	3 cut(s)	435, 531, 933
BseNI	ACTGG	4 cut(s)	103, 325, 794, 1088
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	6 cut(s)	283, 373, 466, 643, 858, 1099
BseYI	CCCAGC	1 cut(s)	951
BshFI	GGCC	4 cut(s)	70, 153, 496, 895
BshNI	GGYRCC	1 cut(s)	649
BshTI	ACCGGT	1 cut(s)	11
BshVI	ATCGAT	1 cut(s)	741
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	3 cut(s)	55, 99, 966
BsnI	GGCC	4 cut(s)	70, 153, 496, 895
BsoBI	CYCGRG	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	192, 958
Bsp143I	GATC	2 cut(s)	725, 1002
BspACI	CCGC	1 cut(s)	839
BspANI	GGCC	4 cut(s)	70, 153, 496, 895
BspCNI	CTCAG	3 cut(s)	436, 532, 932
BspDI	ATCGAT	1 cut(s)	741
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	6 cut(s)	60, 599, 625, 651, 957, 1078
BspMAI	CTGCAG	1 cut(s)	502
BspMI	ACCTGC	2 cut(s)	95, 661
BspPI	GGATC	2 cut(s)	720, 1010
BspT104I	TTCGAA	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	4 cut(s)	103, 325, 794, 1088
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	890, 907
BssMI	GATC	2 cut(s)	725, 1002
Bst2UI	CCWGG	3 cut(s)	493, 628, 891
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstBAI	YACGTR	1 cut(s)	1109
BstBI	TTCGAA	1 cut(s)	85
BstC8I	GCNNGC	4 cut(s)	433, 498, 534, 554
BstDEI	CTNAG	7 cut(s)	236, 444, 523, 540, 851, 919, 1065
BstDSI	CCRYGG	1 cut(s)	907
BstEII	GGTNACC	1 cut(s)	262
BstF5I	GGATG	3 cut(s)	318, 321, 982
BstKTI	GATC	2 cut(s)	728, 1005
BstMBI	GATC	2 cut(s)	725, 1002
BstMWI	GCNNNNNNNGC	5 cut(s)	428, 497, 502, 656, 880
BstNI	CCWGG	3 cut(s)	493, 628, 891
BstNSI	RCATGY	1 cut(s)	208
BstPI	GGTNACC	1 cut(s)	262
BstSCI	CCNGG	3 cut(s)	491, 626, 889
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	6 cut(s)	283, 373, 466, 643, 858, 1099
BstV2I	GAAGAC	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	741
Bsu36I	CCTNAGG	1 cut(s)	236
BsuRI	GGCC	4 cut(s)	70, 153, 496, 895
BsuTUI	ATCGAT	1 cut(s)	741
BtgI	CCRYGG	1 cut(s)	907
BtsCI	GGATG	3 cut(s)	318, 321, 982
BtsIMutI	CAGTG	4 cut(s)	684, 801, 929, 1038
BveI	ACCTGC	2 cut(s)	95, 661
Cac8I	GCNNGC	4 cut(s)	433, 498, 534, 554
CciI	TCATGA	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	3 cut(s)	151, 614, 893
ClaI	ATCGAT	1 cut(s)	741
Csp6I	GTAC	2 cut(s)	9, 761
CspAI	ACCGGT	1 cut(s)	11
CviAII	CATG	8 cut(s)	20, 193, 205, 215, 281, 376, 826, 964
CviQI	GTAC	2 cut(s)	9, 761
DdeI	CTNAG	7 cut(s)	236, 444, 523, 540, 851, 919, 1065
DpnI	GATC	2 cut(s)	727, 1004
DpnII	GATC	2 cut(s)	725, 1002
DrdI	GACNNNNNNGTC	1 cut(s)	818
DseDI	GACNNNNNNGTC	1 cut(s)	818
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
EciI	GGCGGA	1 cut(s)	854
Eco24I	GRGCYC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	614
Eco57I	CTGAAG	3 cut(s)	57, 219, 701
Eco81I	CCTNAGG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	50
Eco91I	GGTNACC	1 cut(s)	262
EcoO65I	GGTNACC	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	218
EcoRII	CCWGG	3 cut(s)	491, 626, 889
EcoT38I	GRGCYC	1 cut(s)	958
FaeI	CATG	8 cut(s)	23, 196, 208, 218, 284, 379, 829, 967
FalI	AAGNNNNNCTT	6 cut(s)	747, 779, 767, 799, 930, 962
FatI	CATG	8 cut(s)	19, 192, 204, 214, 280, 375, 825, 963
Fnu4HI	GCNGC	6 cut(s)	297, 387, 455, 657, 872, 1113
FokI	GGATG	3 cut(s)	308, 325, 989
FriOI	GRGCYC	1 cut(s)	958
Fsp4HI	GCNGC	6 cut(s)	297, 387, 455, 657, 872, 1113
FspBI	CTAG	2 cut(s)	390, 426
GluI	GCNGC	6 cut(s)	297, 387, 455, 657, 872, 1113
GsaI	CCCAGC	1 cut(s)	955
HaeIII	GGCC	4 cut(s)	70, 153, 496, 895
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	8 cut(s)	23, 196, 208, 218, 284, 379, 829, 967
HincII	GTYRAC	3 cut(s)	232, 277, 771
HindII	GTYRAC	3 cut(s)	232, 277, 771
HindIII	AAGCTT	2 cut(s)	80, 530
HinfI	GANTC	4 cut(s)	393, 482, 673, 721
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	724
Hpy166II	GTNNAC	5 cut(s)	17, 232, 277, 761, 771
Hpy188I	TCNGA	7 cut(s)	76, 135, 172, 487, 720, 781, 922
Hpy188III	TCNNGA	4 cut(s)	52, 215, 509, 1000
Hpy8I	GTNNAC	5 cut(s)	17, 232, 277, 761, 771
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	1 cut(s)	1108
HpyCH4V	TGCA	6 cut(s)	32, 435, 500, 536, 552, 666
HpyF10VI	GCNNNNNNNGC	5 cut(s)	428, 497, 502, 656, 880
HpyF3I	CTNAG	7 cut(s)	236, 444, 523, 540, 851, 919, 1065
HpySE526I	ACGT	1 cut(s)	1108
Hsp92II	CATG	8 cut(s)	23, 196, 208, 218, 284, 379, 829, 967
Kzo9I	GATC	2 cut(s)	725, 1002
LmnI	GCTCC	1 cut(s)	961
Lsp1109I	GCAGC	6 cut(s)	283, 373, 466, 643, 858, 1099
LweI	GCATC	2 cut(s)	478, 502
MaeI	CTAG	2 cut(s)	390, 426
MaeII	ACGT	1 cut(s)	1108
MaeIII	GTNAC	3 cut(s)	262, 809, 914
MalI	GATC	2 cut(s)	727, 1004
MboI	GATC	2 cut(s)	725, 1002
MboII	GAAGA	5 cut(s)	154, 190, 193, 212, 418
MhlI	GDGCHC	2 cut(s)	192, 958
MluCI	AATT	6 cut(s)	87, 218, 250, 576, 987, 1051
MlyI	GAGTC	3 cut(s)	491, 667, 715
MmeI	TCCRAC	1 cut(s)	354
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	2 cut(s)	450, 936
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	3 cut(s)	493, 628, 891
MvaI	CCWGG	3 cut(s)	493, 628, 891
MwoI	GCNNNNNNNGC	5 cut(s)	428, 497, 502, 656, 880
NdeII	GATC	2 cut(s)	725, 1002
NlaIII	CATG	8 cut(s)	23, 196, 208, 218, 284, 379, 829, 967
NlaIV	GGNNCC	6 cut(s)	60, 599, 625, 651, 957, 1078
NmuCI	GTSAC	1 cut(s)	809
NspI	RCATGY	1 cut(s)	208
NspV	TTCGAA	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	50
PagI	TCATGA	1 cut(s)	214
PaqCI	CACCTGC	2 cut(s)	95, 661
PciI	ACATGT	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	393
PflFI	GACNNNGTC	1 cut(s)	775
PinAI	ACCGGT	1 cut(s)	11
PkrI	GCNGC	6 cut(s)	298, 388, 456, 658, 873, 1114
PleI	GAGTC	3 cut(s)	490, 667, 715
PpsI	GAGTC	3 cut(s)	490, 667, 715
Ppu21I	YACGTR	1 cut(s)	1109
PscI	ACATGT	1 cut(s)	204
Psp6I	CCWGG	3 cut(s)	491, 626, 889
PspEI	GGTNACC	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	951
PspGI	CCWGG	3 cut(s)	491, 626, 889
PspN4I	GGNNCC	6 cut(s)	60, 599, 625, 651, 957, 1078
PspPI	GGNCC	3 cut(s)	151, 614, 893
PstI	CTGCAG	1 cut(s)	502
PsyI	GACNNNGTC	1 cut(s)	775
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	2 cut(s)	10, 762
RsaNI	GTAC	2 cut(s)	9, 761
SaqAI	TTAA	2 cut(s)	450, 936
SatI	GCNGC	6 cut(s)	297, 387, 455, 657, 872, 1113
Sau3AI	GATC	2 cut(s)	725, 1002
Sau96I	GGNCC	3 cut(s)	151, 614, 893
SchI	GAGTC	3 cut(s)	491, 667, 715
ScrFI	CCNGG	3 cut(s)	493, 628, 891
SduI	GDGCHC	2 cut(s)	192, 958
SfaNI	GCATC	2 cut(s)	478, 502
SfcI	CTRYAG	1 cut(s)	498
Sfr274I	CTCGAG	1 cut(s)	50
SfuI	TTCGAA	1 cut(s)	85
SinI	GGWCC	1 cut(s)	614
SlaI	CTCGAG	1 cut(s)	50
SmlI	CTYRAG	2 cut(s)	50, 507
SmoI	CTYRAG	2 cut(s)	50, 507
Sse9I	AATT	6 cut(s)	87, 218, 250, 576, 987, 1051
SsiI	CCGC	1 cut(s)	839
SspI	AATATT	1 cut(s)	802
SspMI	CTAG	2 cut(s)	390, 426
StyD4I	CCNGG	3 cut(s)	491, 626, 889
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	1 cut(s)	1111
TaqI	TCGA	5 cut(s)	51, 85, 724, 741, 1049
TasI	AATT	6 cut(s)	87, 218, 250, 576, 987, 1051
TatI	WGTACW	1 cut(s)	760
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	2 cut(s)	450, 936
Tru9I	TTAA	2 cut(s)	450, 936
TscAI	CASTG	4 cut(s)	691, 801, 936, 1045
TseFI	GTSAC	1 cut(s)	809
TseI	GCWGC	6 cut(s)	296, 386, 454, 656, 871, 1112
Tsp45I	GTSAC	1 cut(s)	809
TspDTI	ATGAA	5 cut(s)	231, 310, 727, 759, 842
TspGWI	ACGGA	2 cut(s)	776, 896
TspRI	CASTG	4 cut(s)	691, 801, 936, 1045
Tth111I	GACNNNGTC	1 cut(s)	775
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	2 cut(s)	87, 218
XceI	RCATGY	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	2 cut(s)	608, 887
XhoI	CTCGAG	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	2 cut(s)	390, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.