Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003420

Physical Location & Seq

Genomic Coordinates Reverse (-)

47560354 .. 47563507

Gene Structure 3154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025681

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGAAAAGCACTTTTCCATAACAAAGAAAAGCACTTTTCACATAATCTCCCCATTTAAAATTCCTGAAATTTTACTCACAGCACATAAGCCCAGAACCCACACCTCCATTTCTGAGAACCCTTTACCTCACATTTTCTTCTTCTTCATCTTCAACCTCAAAGCACCAAAGTTTACGCATTTCAGTATGGGAAGTGCTGGTGAAAGTGGTTATGGTGCATACACCTATGAGGCTCTTGAGAGGGAGCCTTATTGGCCCTCAGAAAAACTCCGAATTTCCATTACTGGGGCTGGTGGCTTTATTGCCTCCCACATTGCCCGCCGATTGAAGAATGAGGGCCACTACATTATTGCCTCTGACTGGAAGAAGAATGAGCACATGAGTGAAGACATGTTCTGCCATGAATTCCATCTTGTGGACCTCAGGGTCATGGATAACTGCTTGAAGGTTACCAAGGATGTCGATCATGTGTTCAACCTTGCCGCTGATATGGGCGGCATGGGATTTATTCAGTCCAACCACTCTGTCATTATGTACAATAATACCATGATCAGCTTTAACATGCTGGAAGCTGCTAGGATCAGTGGAGTGAAAAGGTTATTCTATGCTTCCAGTGCTTGTATTTATCCCGAGTTTAAGCAGCTGGAAACCAATGTGAGCTTGAAGGAGGCTGATGCCTGGCCTGCAGAGCCTCAAGATGCTTATGGCTTAGAGAAACTTGCAACTGAGGAGTTGTGCAAGCACTACACCAAAGACTTTGGAATCGAATGCCGTATTGGAAGGTTCCACAACATTTATGGTCCTTTCGGGACCTGGAAAGGGGGCAGGGAGAAGGCTCCTGCTGCTTTCTGCAGAAAGGCTCTCACTTCCACTGATAAGTTTGAGATGTGGGGAGATGGACTCCAGACCCGATCCTTCACTTTTATTGATGAATGTGTTGAAGGTGTACTCCGGTTGACAAAGTCCGACTTCCGTGAGCCCGTGAATATTGGAAGCGATGAGATGGTTAGCATGAATGAGATGGCTGAGATTGTTCTTAGCTTTGAGAACAAGAAGCTGCCTATTCAGCACATTCCTGGGCCTGAGGGTGTCCGTGGTCGTAACTCTGACAACACCCTGATCAAAGAGAAACTTGGCTGGGCTCCTACCATGAGGCTGAAGGATGGACTGAGGTTTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAGAAGGCACAAGGTACTGACCTGTCGCTTTATGGGTCATCTAAGGTGGTGGGAACTCAAGCCCCAGTTCAACTTGGTTCACTTCGTGCCGCTGATGGCAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko00520 ko01100 ko01110 map00053 map00520 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

439

Amino Acids

49.69

Weight (kDa)

6.98

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	92 - 331	2.4e-45	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	94 - 391	2.1e-26	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	94 - 246	1.4e-09	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28840 AT5G28840
fragaria_vesca	FvH4_6g02980
malus_domestica	MD04G1224100.v1.1 MD04G1224200.v1.1 MD12G1240900.v1.1
prunus_persica	Prupe.1G025100_v2.0.a1 Prupe.1G025100_v2.0.a1 Prupe.6G342800_v2.0.a1
pyrus_communis	pycom04g19750
rosa_chinensis	RchiOBHm_Chr3g0451161 RchiOBHm_Chr4g0388911
rosa_laevigata	RLG00000010008 RLG00000010011 RLG00000025681 RLG00000025682
rosa_multiflora	Rmu_co8299443.1_g000001 Rmu_sc0005486.1_g000010 Rmu_ssc0000028.1_g000003
rosa_roxburghii	Rroxscaffold_5G00335220 Rroxscaffold_6G00428630
rosa_rugosa	Rorug02G0632400 Rorug02G0632500 Rorug03G0321000 Rorug03G0321000 Rorug03G0321100
rosa_samantha	Rh3AG034900 Rh3BG035300 Rh3CG033800 Rh3CG033900 Rh3DG034900 Rh4BG018800 Rh4CG028600 Rh4DG019300
rosa_wichuraiana	Rw3G002560 Rw4G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	415
AciI	CCGC	4 cut(s)	319, 483, 495, 1299
AclWI	GGATC	3 cut(s)	587, 906, 1196
AcsI	RAATTY	4 cut(s)	60, 69, 273, 404
AcuI	CTGAAG	1 cut(s)	1178
AdeI	CACNNNGTG	1 cut(s)	1295
AfaI	GTAC	3 cut(s)	536, 948, 1225
AfiI	CCNNNNNNNGG	4 cut(s)	285, 360, 415, 819
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	7 cut(s)	154, 328, 445, 475, 664, 941, 1280
AjnI	CCWGG	3 cut(s)	677, 812, 1075
AjuI	GAANNNNNNNTTGG	2 cut(s)	759, 791
AleI	CACNNNNGTG	1 cut(s)	381
AluBI	AGCT	6 cut(s)	555, 572, 643, 660, 1041, 1057
AluI	AGCT	6 cut(s)	555, 572, 643, 660, 1041, 1057
Alw21I	GWGCWC	1 cut(s)	378
AlwI	GGATC	3 cut(s)	587, 906, 1196
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	4 cut(s)	254, 337, 680, 1079
ApeKI	GCWGC	4 cut(s)	572, 640, 842, 1057
ApoI	RAATTY	4 cut(s)	60, 69, 273, 404
AspS9I	GGNCC	6 cut(s)	255, 337, 418, 800, 810, 1079
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	629
AvaII	GGWCC	3 cut(s)	418, 800, 810
AxyI	CCTNAGG	2 cut(s)	422, 1083
BanII	GRGCYC	2 cut(s)	981, 1144
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	4 cut(s)	559, 652, 829, 1044
BccI	CCATC	6 cut(s)	417, 890, 997, 1015, 1157, 1298
BceAI	ACGGC	1 cut(s)	756
BciT130I	CCWGG	3 cut(s)	679, 814, 1077
BclI	TGATCA	2 cut(s)	549, 1119
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	2 cut(s)	684, 850
BglI	GCCNNNNNGGC	1 cut(s)	253
BisI	GCNGC	7 cut(s)	483, 496, 573, 641, 843, 1058, 1299
BlsI	GCNGC	7 cut(s)	484, 497, 574, 642, 844, 1059, 1300
Bme1390I	CCNGG	3 cut(s)	679, 814, 1077
Bme18I	GGWCC	3 cut(s)	418, 800, 810
BmeT110I	CYCGRG	1 cut(s)	629
BmgT120I	GGNCC	6 cut(s)	255, 337, 418, 800, 810, 1079
BmiI	GGNNCC	5 cut(s)	246, 785, 811, 837, 1143
BmrFI	CCNGG	3 cut(s)	679, 814, 1077
BmrI	ACTGGG	2 cut(s)	294, 1268
BmsI	GCATC	2 cut(s)	664, 688
BmuI	ACTGGG	2 cut(s)	294, 1268
BpiI	GAAGAC	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	885, 917
BpmI	CTGGAG	1 cut(s)	887
BpuEI	CTTGAG	3 cut(s)	257, 678, 1251
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	3 cut(s)	453, 1076, 1093
BsaWI	WCCGGW	1 cut(s)	951
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 360, 415, 819
Bse1I	ACTGG	4 cut(s)	289, 365, 612, 1274
Bse21I	CCTNAGG	2 cut(s)	422, 1083
Bse3DI	GCAATG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	3 cut(s)	679, 814, 1077
BseDI	CCNNGG	3 cut(s)	453, 1076, 1093
BseGI	GGATG	2 cut(s)	463, 1168
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	4 cut(s)	285, 360, 415, 819
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	7 cut(s)	105, 273, 436, 717, 1017, 1074, 1160
BseNI	ACTGG	4 cut(s)	289, 365, 612, 1274
BseRI	GAGGAG	1 cut(s)	743
BseXI	GCAGC	4 cut(s)	559, 652, 829, 1044
BseYI	CCCAGC	1 cut(s)	1137
BshFI	GGCC	4 cut(s)	256, 339, 682, 1081
BsiHKAI	GWGCWC	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	629
BsiSI	CCGG	1 cut(s)	952
BslFI	GGGAC	1 cut(s)	823
BslI	CCNNNNNNNGG	4 cut(s)	285, 360, 415, 819
BsmFI	GGGAC	1 cut(s)	823
BsmI	GAATGC	1 cut(s)	773
BsnI	GGCC	4 cut(s)	256, 339, 682, 1081
BsoBI	CYCGRG	1 cut(s)	629
Bsp1286I	GDGCHC	3 cut(s)	378, 981, 1144
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	6 cut(s)	463, 549, 579, 911, 1119, 1188
BspACI	CCGC	4 cut(s)	319, 483, 495, 1299
BspANI	GGCC	4 cut(s)	256, 339, 682, 1081
BspCNI	CTCAG	7 cut(s)	106, 272, 435, 718, 1018, 1075, 1161
BspLI	GGNNCC	5 cut(s)	246, 785, 811, 837, 1143
BspMAI	CTGCAG	2 cut(s)	688, 854
BspPI	GGATC	3 cut(s)	587, 906, 1196
BsrDI	GCAATG	1 cut(s)	312
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	4 cut(s)	289, 365, 612, 1274
BssECI	CCNNGG	3 cut(s)	453, 1076, 1093
BssMI	GATC	6 cut(s)	463, 549, 579, 911, 1119, 1188
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	3 cut(s)	679, 814, 1077
BstAUI	TGTACA	1 cut(s)	534
BstC8I	GCNNGC	3 cut(s)	319, 684, 740
BstDSI	CCRYGG	1 cut(s)	1093
BstEII	GGTNACC	1 cut(s)	448
BstF5I	GGATG	2 cut(s)	463, 1168
BstKTI	GATC	6 cut(s)	466, 552, 582, 914, 1122, 1191
BstMBI	GATC	6 cut(s)	463, 549, 579, 911, 1119, 1188
BstMWI	GCNNNNNNNGC	6 cut(s)	253, 614, 683, 688, 842, 1066
BstNI	CCWGG	3 cut(s)	679, 814, 1077
BstNSI	RCATGY	2 cut(s)	394, 565
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	3 cut(s)	677, 812, 1075
BstSFI	CTRYAG	2 cut(s)	684, 850
BstV1I	GCAGC	4 cut(s)	559, 652, 829, 1044
BstV2I	GAAGAC	1 cut(s)	393
Bsu36I	CCTNAGG	2 cut(s)	422, 1083
BsuRI	GGCC	4 cut(s)	256, 339, 682, 1081
BtgI	CCRYGG	1 cut(s)	1093
BtgZI	GCGATG	1 cut(s)	1011
BtsCI	GGATG	2 cut(s)	463, 1168
BtsIMutI	CAGTG	3 cut(s)	589, 619, 870
Cac8I	GCNNGC	3 cut(s)	319, 684, 740
Cfr13I	GGNCC	6 cut(s)	255, 337, 418, 800, 810, 1079
Csp6I	GTAC	3 cut(s)	535, 947, 1224
CviQI	GTAC	3 cut(s)	535, 947, 1224
DpnI	GATC	6 cut(s)	465, 551, 581, 913, 1121, 1190
DpnII	GATC	6 cut(s)	463, 549, 579, 911, 1119, 1188
DraI	TTTAAA	1 cut(s)	58
DraIII	CACNNNGTG	1 cut(s)	1295
DrdI	GACNNNNNNGTC	1 cut(s)	425
DseDI	GACNNNNNNGTC	1 cut(s)	425
Eco130I	CCWWGG	1 cut(s)	453
Eco24I	GRGCYC	2 cut(s)	981, 1144
Eco47I	GGWCC	3 cut(s)	418, 800, 810
Eco57I	CTGAAG	1 cut(s)	1178
Eco81I	CCTNAGG	2 cut(s)	422, 1083
Eco88I	CYCGRG	1 cut(s)	629
Eco91I	GGTNACC	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	810
EcoO65I	GGTNACC	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	3 cut(s)	677, 812, 1075
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	2 cut(s)	981, 1144
ErhI	CCWWGG	1 cut(s)	453
FalI	AAGNNNNNCTT	4 cut(s)	953, 985, 1116, 1148
FaqI	GGGAC	1 cut(s)	823
FauI	CCCGC	1 cut(s)	326
FbaI	TGATCA	2 cut(s)	549, 1119
Fnu4HI	GCNGC	7 cut(s)	483, 496, 573, 641, 843, 1058, 1299
FokI	GGATG	2 cut(s)	470, 1175
FriOI	GRGCYC	2 cut(s)	981, 1144
Fsp4HI	GCNGC	7 cut(s)	483, 496, 573, 641, 843, 1058, 1299
FspBI	CTAG	1 cut(s)	576
GluI	GCNGC	7 cut(s)	483, 496, 573, 641, 843, 1058, 1299
GsaI	CCCAGC	1 cut(s)	1141
GsuI	CTGGAG	1 cut(s)	887
HaeIII	GGCC	4 cut(s)	256, 339, 682, 1081
HapII	CCGG	1 cut(s)	952
HincII	GTYRAC	1 cut(s)	957
HindII	GTYRAC	1 cut(s)	957
HinfI	GANTC	2 cut(s)	762, 900
HpaII	CCGG	1 cut(s)	952
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	6 cut(s)	174, 418, 947, 957, 1176, 1289
Hpy188I	TCNGA	6 cut(s)	115, 262, 272, 358, 967, 1108
Hpy188III	TCNNGA	7 cut(s)	65, 236, 629, 695, 808, 904, 1186
Hpy8I	GTNNAC	6 cut(s)	174, 418, 947, 957, 1176, 1289
HpyAV	CCTTC	8 cut(s)	439, 658, 774, 826, 925, 935, 1153, 1207
HpyCH4V	TGCA	5 cut(s)	218, 686, 722, 738, 852
HpyF10VI	GCNNNNNNNGC	6 cut(s)	253, 614, 683, 688, 842, 1066
Ksp22I	TGATCA	2 cut(s)	549, 1119
Kzo9I	GATC	6 cut(s)	463, 549, 579, 911, 1119, 1188
LmnI	GCTCC	3 cut(s)	244, 841, 1147
Lsp1109I	GCAGC	4 cut(s)	559, 652, 829, 1044
LweI	GCATC	2 cut(s)	664, 688
MaeI	CTAG	1 cut(s)	576
MaeIII	GTNAC	2 cut(s)	448, 1100
MalI	GATC	6 cut(s)	465, 551, 581, 913, 1121, 1190
MboI	GATC	6 cut(s)	463, 549, 579, 911, 1119, 1188
MboII	GAAGA	8 cut(s)	130, 133, 136, 142, 340, 376, 379, 398
MhlI	GDGCHC	3 cut(s)	378, 981, 1144
MluCI	AATT	4 cut(s)	60, 69, 273, 404
MlyI	GAGTC	1 cut(s)	894
MmeI	TCCRAC	2 cut(s)	540, 990
MseI	TTAA	3 cut(s)	57, 558, 636
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	3 cut(s)	485, 643, 1301
MspI	CCGG	1 cut(s)	952
MspR9I	CCNGG	3 cut(s)	679, 814, 1077
Mva1269I	GAATGC	1 cut(s)	773
MvaI	CCWGG	3 cut(s)	679, 814, 1077
MwoI	GCNNNNNNNGC	6 cut(s)	253, 614, 683, 688, 842, 1066
NdeII	GATC	6 cut(s)	463, 549, 579, 911, 1119, 1188
NlaIV	GGNNCC	5 cut(s)	246, 785, 811, 837, 1143
NspI	RCATGY	2 cut(s)	394, 565
OliI	CACNNNNGTG	1 cut(s)	381
PciI	ACATGT	1 cut(s)	390
PctI	GAATGC	1 cut(s)	773
PfeI	GAWTC	1 cut(s)	762
PflFI	GACNNNGTC	1 cut(s)	961
PflMI	CCANNNNNTGG	1 cut(s)	415
PkrI	GCNGC	7 cut(s)	484, 497, 574, 642, 844, 1059, 1300
PleI	GAGTC	1 cut(s)	894
PpsI	GAGTC	1 cut(s)	894
PpuMI	RGGWCCY	1 cut(s)	810
PscI	ACATGT	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	810
Psp6I	CCWGG	3 cut(s)	677, 812, 1075
PspEI	GGTNACC	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	1137
PspGI	CCWGG	3 cut(s)	677, 812, 1075
PspN4I	GGNNCC	5 cut(s)	246, 785, 811, 837, 1143
PspPI	GGNCC	6 cut(s)	255, 337, 418, 800, 810, 1079
PspPPI	RGGWCCY	1 cut(s)	810
PstI	CTGCAG	2 cut(s)	688, 854
PsyI	GACNNNGTC	1 cut(s)	961
PvuII	CAGCTG	1 cut(s)	643
RsaI	GTAC	3 cut(s)	536, 948, 1225
RsaNI	GTAC	3 cut(s)	535, 947, 1224
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	57, 558, 636
SatI	GCNGC	7 cut(s)	483, 496, 573, 641, 843, 1058, 1299
Sau3AI	GATC	6 cut(s)	463, 549, 579, 911, 1119, 1188
Sau96I	GGNCC	6 cut(s)	255, 337, 418, 800, 810, 1079
SchI	GAGTC	1 cut(s)	894
ScrFI	CCNGG	3 cut(s)	679, 814, 1077
SduI	GDGCHC	3 cut(s)	378, 981, 1144
SfaNI	GCATC	2 cut(s)	664, 688
SfcI	CTRYAG	2 cut(s)	684, 850
SinI	GGWCC	3 cut(s)	418, 800, 810
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	3 cut(s)	236, 693, 1266
SmoI	CTYRAG	3 cut(s)	236, 693, 1266
Sse9I	AATT	4 cut(s)	60, 69, 273, 404
SsiI	CCGC	4 cut(s)	319, 483, 495, 1299
SspI	AATATT	1 cut(s)	988
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	3 cut(s)	677, 812, 1075
StyI	CCWWGG	1 cut(s)	453
TaqI	TCGA	2 cut(s)	462, 765
TasI	AATT	4 cut(s)	60, 69, 273, 404
TatI	WGTACW	2 cut(s)	534, 946
TauI	GCSGC	3 cut(s)	485, 498, 1301
TfiI	GAWTC	1 cut(s)	762
Tru1I	TTAA	3 cut(s)	57, 558, 636
Tru9I	TTAA	3 cut(s)	57, 558, 636
TscAI	CASTG	3 cut(s)	589, 619, 877
TseI	GCWGC	4 cut(s)	572, 640, 842, 1057
TspDTI	ATGAA	4 cut(s)	136, 417, 945, 1028
TspGWI	ACGGA	2 cut(s)	962, 1082
TspRI	CASTG	3 cut(s)	589, 619, 877
Tth111I	GACNNNGTC	1 cut(s)	961
Van91I	CCANNNNNTGG	1 cut(s)	415
VpaK11BI	GGWCC	3 cut(s)	418, 800, 810
XapI	RAATTY	4 cut(s)	60, 69, 273, 404
XceI	RCATGY	2 cut(s)	394, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	794
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.