Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000028.1

Orthogroup ID

OG0003420

Physical Location & Seq

Genomic Coordinates Reverse (-)

9447 .. 15648

Gene Structure 6202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000028.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

atggttgaagttctccaaaacactcccaaacggagaggatctagaaaatttggcaaatgtcccacactgagcagttgcacagttgaatacttgtttgagacagaaagaattgagttagatatgttagtcgttacacatgcttctctcctaaagctttttgatattgctgatacatggatcttttcggaaatattgactgaattaaggattttccatgagaagttggtttcattgatcaattcattgtcacaggaaaacaacaagtttctcattaaggtatcaaatacaaagaatatattgccaactgatcactttgagttgaacaccaacttcacattcacttcccctatcccccaaccaatactggaggataacaggaggaggaatgtggtggagagagtaaaccatgacatgagcttgatcatccagtgcatgcttatgaaggtaatgaaacccagtataggttttggacagatggataggcagaagctagcaattgcagcaattgaaaagtgtattgggttagaaaaattcaggtttgttccaacaagagcagctgttggtgttagcattgcaagtctgatcaagaacgagtatttgctggtggataagaacgacaacaacatcagtctatatatagccgagtgttacagggccagaactcacacctccatctctgagaaccctttacctcacatcttcttcttcttcttcaaccttgaagcaccaaactttacgcatttcagtatgggaagtgctggtgaaagtggttatggtgcatacacctatgaggctcttgagagggagccttattggccctcagaaaaactccgaatttccattactggggctggtggctttattgcctcccacattgcccgccgattgaagaatgagggccactacattattgcctctgactggaagaagaatgagcacatgagtgaagacatgttctgccatgaattccatcttgcggacctcagggtcatggataactgcttgaaggttaccaaggatgtcgatcatgtgttcaaccttgctgctgatatgggcggcatgggattcattcagtccaaccactctgtcattatgtacaataataccatgatcagctttaacatgctggaagctgctaggatcagtggagtgaaaaggttattctatgcttccagtgcttgtatttatcctgagtttaagcagctggaaaccaatgtgagcttgaaggaggctgatgcctggcctgcagagcctcaagatgcttatggcttagagaaacttgcaactgaggagttgtgcaagcactacaccaaagactttggaatcgaatgccgtattggaaggttccacaacatctatggtcctttcggaacctggaaagggggcagggagaaggctcctgctgctttctgcagaaaggctctcacttccactgataagtttgagatgtggggagatggactccagacccgatccttcacctttattgatgaatgtgttgaaggtgtactccggttgacaaagtccgacttccgtgagccagtgaatattggaagcgatgagatggttagcatgaatgagatggctgagattgttcttagctttgagaacaagaagctgcctattcaacacattcctgggcctgagggtgtccgtggtcgtaactctgacaacaccctgatcaaagagaaacttggctgggctcctaccatgaggctgaaggatggactgaggtttacatacttctggatcaaggaacagattgagaaagagaaagcacaaggtactgacctgtcgctttatgggtcatctaaggtggtgggaactcaagccccagttcaacttggttcacttcgtgccgctgacggcaaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko00520 ko01100 ko01110 map00053 map00520 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

625

Amino Acids

71.09

Weight (kDa)

6.52

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28840 AT5G28840
fragaria_vesca	FvH4_6g02980
malus_domestica	MD04G1224100.v1.1 MD04G1224200.v1.1 MD12G1240900.v1.1
prunus_persica	Prupe.1G025100_v2.0.a1 Prupe.1G025100_v2.0.a1 Prupe.6G342800_v2.0.a1
pyrus_communis	pycom04g19750
rosa_chinensis	RchiOBHm_Chr3g0451161 RchiOBHm_Chr4g0388911
rosa_laevigata	RLG00000010008 RLG00000010011 RLG00000025681 RLG00000025682
rosa_multiflora	Rmu_co8299443.1_g000001 Rmu_sc0005486.1_g000010 Rmu_ssc0000028.1_g000003
rosa_roxburghii	Rroxscaffold_5G00335220 Rroxscaffold_6G00428630
rosa_rugosa	Rorug02G0632400 Rorug02G0632500 Rorug03G0321000 Rorug03G0321000 Rorug03G0321100
rosa_samantha	Rh3AG034900 Rh3BG035300 Rh3CG033800 Rh3CG033900 Rh3DG034900 Rh4BG018800 Rh4CG028600 Rh4DG019300
rosa_wichuraiana	Rw3G002560 Rw4G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	986
AciI	CCGC	4 cut(s)	880, 977, 1056, 1860
AclWI	GGATC	5 cut(s)	46, 185, 1148, 1467, 1757
AcsI	RAATTY	4 cut(s)	47, 530, 834, 965
AcuI	CTGAAG	1 cut(s)	1739
AdeI	CACNNNGTG	1 cut(s)	1856
AfaI	GTAC	3 cut(s)	1097, 1509, 1786
AfiI	CCNNNNNNNGG	5 cut(s)	461, 846, 921, 976, 1380
AflIII	ACRYGT	1 cut(s)	951
AjnI	CCWGG	3 cut(s)	1238, 1373, 1636
AjuI	GAANNNNNNNTTGG	6 cut(s)	320, 352, 501, 533, 1320, 1352
AleI	CACNNNNGTG	1 cut(s)	942
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	5 cut(s)	46, 185, 1148, 1467, 1757
AoxI	GGCC	5 cut(s)	654, 815, 898, 1241, 1640
ApeKI	GCWGC	7 cut(s)	500, 554, 1043, 1133, 1201, 1403, 1618
ApoI	RAATTY	4 cut(s)	47, 530, 834, 965
AspS9I	GGNCC	6 cut(s)	654, 816, 898, 979, 1361, 1640
AsuHPI	GGTGA	2 cut(s)	773, 1471
AsuNHI	GCTAGC	1 cut(s)	490
AvaII	GGWCC	2 cut(s)	979, 1361
AxyI	CCTNAGG	2 cut(s)	983, 1644
BanII	GRGCYC	1 cut(s)	1705
BbsI	GAAGAC	1 cut(s)	954
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	7 cut(s)	512, 566, 1030, 1120, 1213, 1390, 1605
BccI	CCATC	7 cut(s)	469, 680, 978, 1451, 1558, 1576, 1718
BceAI	ACGGC	1 cut(s)	1317
BciT130I	CCWGG	3 cut(s)	1240, 1375, 1638
BclI	TGATCA	6 cut(s)	234, 307, 420, 582, 1110, 1680
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	3 cut(s)	42, 491, 1137
BfmI	CTRYAG	2 cut(s)	1245, 1411
BglI	GCCNNNNNGGC	1 cut(s)	814
BisI	GCNGC	9 cut(s)	501, 555, 1044, 1057, 1134, 1202, 1404, 1619, 1860
BlsI	GCNGC	9 cut(s)	502, 556, 1045, 1058, 1135, 1203, 1405, 1620, 1861
Bme1390I	CCNGG	3 cut(s)	1240, 1375, 1638
Bme18I	GGWCC	2 cut(s)	979, 1361
BmgT120I	GGNCC	6 cut(s)	654, 816, 898, 979, 1361, 1640
BmiI	GGNNCC	5 cut(s)	807, 1346, 1372, 1398, 1704
BmrFI	CCNGG	3 cut(s)	1240, 1375, 1638
BmrI	ACTGGG	3 cut(s)	450, 855, 1829
BmsI	GCATC	2 cut(s)	1225, 1249
BmtI	GCTAGC	1 cut(s)	494
BmuI	ACTGGG	3 cut(s)	450, 855, 1829
BpiI	GAAGAC	1 cut(s)	954
BplI	GAGNNNNNCTC	2 cut(s)	1446, 1478
BpmI	CTGGAG	2 cut(s)	386, 1448
BpuEI	CTTGAG	3 cut(s)	818, 1239, 1812
BsaBI	GATNNNNATC	1 cut(s)	1023
BsaJI	CCNNGG	3 cut(s)	1014, 1637, 1654
BsaWI	WCCGGW	1 cut(s)	1512
Bsc4I	CCNNNNNNNGG	5 cut(s)	461, 846, 921, 976, 1380
Bse1I	ACTGG	8 cut(s)	369, 427, 456, 850, 926, 1173, 1541, 1835
Bse21I	CCTNAGG	2 cut(s)	983, 1644
Bse3DI	GCAATG	2 cut(s)	570, 873
Bse8I	GATNNNNATC	1 cut(s)	1023
BseBI	CCWGG	3 cut(s)	1240, 1375, 1638
BseDI	CCNNGG	3 cut(s)	1014, 1637, 1654
BseGI	GGATG	3 cut(s)	423, 1024, 1729
BseJI	GATNNNNATC	1 cut(s)	1023
BseLI	CCNNNNNNNGG	5 cut(s)	461, 846, 921, 976, 1380
BseMI	GCAATG	2 cut(s)	570, 873
BseMII	CTCAG	9 cut(s)	59, 669, 834, 997, 1182, 1278, 1578, 1635, 1721
BseNI	ACTGG	8 cut(s)	369, 427, 456, 850, 926, 1173, 1541, 1835
BseRI	GAGGAG	2 cut(s)	394, 1304
BseXI	GCAGC	7 cut(s)	512, 566, 1030, 1120, 1213, 1390, 1605
BseYI	CCCAGC	1 cut(s)	1698
BshFI	GGCC	5 cut(s)	656, 817, 900, 1243, 1642
BsiHKAI	GWGCWC	1 cut(s)	939
BsiSI	CCGG	1 cut(s)	1513
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	5 cut(s)	461, 846, 921, 976, 1380
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	1334
BsnI	GGCC	5 cut(s)	656, 817, 900, 1243, 1642
Bsp1286I	GDGCHC	2 cut(s)	939, 1705
Bsp1407I	TGTACA	1 cut(s)	1095
BspACI	CCGC	4 cut(s)	880, 977, 1056, 1860
BspANI	GGCC	5 cut(s)	656, 817, 900, 1243, 1642
BspCNI	CTCAG	9 cut(s)	60, 670, 833, 996, 1183, 1279, 1579, 1636, 1722
BspLI	GGNNCC	5 cut(s)	807, 1346, 1372, 1398, 1704
BspMAI	CTGCAG	2 cut(s)	1249, 1415
BspOI	GCTAGC	1 cut(s)	494
BspPI	GGATC	5 cut(s)	46, 185, 1148, 1467, 1757
BsrDI	GCAATG	2 cut(s)	570, 873
BsrGI	TGTACA	1 cut(s)	1095
BsrI	ACTGG	8 cut(s)	369, 427, 456, 850, 926, 1173, 1541, 1835
BssECI	CCNNGG	3 cut(s)	1014, 1637, 1654
BssT1I	CCWWGG	1 cut(s)	1014
Bst2UI	CCWGG	3 cut(s)	1240, 1375, 1638
Bst4CI	ACNGT	1 cut(s)	82
BstAUI	TGTACA	1 cut(s)	1095
BstC8I	GCNNGC	5 cut(s)	434, 492, 880, 1245, 1301
BstDSI	CCRYGG	1 cut(s)	1654
BstEII	GGTNACC	1 cut(s)	1009
BstF5I	GGATG	3 cut(s)	423, 1024, 1729
BstMAI	GTCTC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	6 cut(s)	500, 814, 1175, 1244, 1249, 1403
BstNI	CCWGG	3 cut(s)	1240, 1375, 1638
BstNSI	RCATGY	4 cut(s)	140, 436, 955, 1126
BstPI	GGTNACC	1 cut(s)	1009
BstSCI	CCNGG	3 cut(s)	1238, 1373, 1636
BstSFI	CTRYAG	2 cut(s)	1245, 1411
BstV1I	GCAGC	7 cut(s)	512, 566, 1030, 1120, 1213, 1390, 1605
BstV2I	GAAGAC	1 cut(s)	954
BstX2I	RGATCY	2 cut(s)	38, 177
BstYI	RGATCY	2 cut(s)	38, 177
Bsu36I	CCTNAGG	2 cut(s)	983, 1644
BsuRI	GGCC	5 cut(s)	656, 817, 900, 1243, 1642
BtgI	CCRYGG	1 cut(s)	1654
BtgZI	GCGATG	1 cut(s)	1572
BtsCI	GGATG	3 cut(s)	423, 1024, 1729
BtsIMutI	CAGTG	6 cut(s)	65, 434, 1150, 1180, 1431, 1548
Cac8I	GCNNGC	5 cut(s)	434, 492, 880, 1245, 1301
Cfr13I	GGNCC	6 cut(s)	654, 816, 898, 979, 1361, 1640
Csp6I	GTAC	3 cut(s)	1096, 1508, 1785
CviQI	GTAC	3 cut(s)	1096, 1508, 1785
DraIII	CACNNNGTG	1 cut(s)	1856
DrdI	GACNNNNNNGTC	1 cut(s)	986
DseDI	GACNNNNNNGTC	1 cut(s)	986
Eco130I	CCWWGG	1 cut(s)	1014
Eco24I	GRGCYC	1 cut(s)	1705
Eco47I	GGWCC	2 cut(s)	979, 1361
Eco57I	CTGAAG	1 cut(s)	1739
Eco81I	CCTNAGG	2 cut(s)	983, 1644
Eco91I	GGTNACC	1 cut(s)	1009
EcoO65I	GGTNACC	1 cut(s)	1009
EcoRI	GAATTC	1 cut(s)	965
EcoRII	CCWGG	3 cut(s)	1238, 1373, 1636
EcoT14I	CCWWGG	1 cut(s)	1014
EcoT38I	GRGCYC	1 cut(s)	1705
ErhI	CCWWGG	1 cut(s)	1014
FalI	AAGNNNNNCTT	4 cut(s)	1514, 1546, 1677, 1709
FaqI	GGGAC	1 cut(s)	45
FauI	CCCGC	1 cut(s)	887
FbaI	TGATCA	6 cut(s)	234, 307, 420, 582, 1110, 1680
Fnu4HI	GCNGC	9 cut(s)	501, 555, 1044, 1057, 1134, 1202, 1404, 1619, 1860
FokI	GGATG	3 cut(s)	410, 1031, 1736
FriOI	GRGCYC	1 cut(s)	1705
Fsp4HI	GCNGC	9 cut(s)	501, 555, 1044, 1057, 1134, 1202, 1404, 1619, 1860
FspBI	CTAG	3 cut(s)	42, 491, 1137
GluI	GCNGC	9 cut(s)	501, 555, 1044, 1057, 1134, 1202, 1404, 1619, 1860
GsaI	CCCAGC	1 cut(s)	1702
GsuI	CTGGAG	2 cut(s)	386, 1448
HaeIII	GGCC	5 cut(s)	656, 817, 900, 1243, 1642
HapII	CCGG	1 cut(s)	1513
HincII	GTYRAC	1 cut(s)	1518
HindII	GTYRAC	1 cut(s)	1518
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	3 cut(s)	1065, 1323, 1461
HpaII	CCGG	1 cut(s)	1513
HphI	GGTGA	2 cut(s)	773, 1471
Hpy166II	GTNNAC	5 cut(s)	403, 1508, 1518, 1737, 1850
Hpy188I	TCNGA	9 cut(s)	187, 582, 679, 823, 833, 919, 1370, 1528, 1669
Hpy188III	TCNNGA	7 cut(s)	42, 586, 797, 1190, 1256, 1465, 1747
Hpy8I	GTNNAC	5 cut(s)	403, 1508, 1518, 1737, 1850
HpyAV	CCTTC	8 cut(s)	436, 1000, 1219, 1335, 1387, 1486, 1496, 1714
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	9 cut(s)	78, 432, 500, 575, 779, 1247, 1283, 1299, 1413
HpyF10VI	GCNNNNNNNGC	6 cut(s)	500, 814, 1175, 1244, 1249, 1403
Ksp22I	TGATCA	6 cut(s)	234, 307, 420, 582, 1110, 1680
LmnI	GCTCC	3 cut(s)	805, 1402, 1708
Lsp1109I	GCAGC	7 cut(s)	512, 566, 1030, 1120, 1213, 1390, 1605
LweI	GCATC	2 cut(s)	1225, 1249
MaeI	CTAG	3 cut(s)	42, 491, 1137
MaeIII	GTNAC	5 cut(s)	130, 246, 647, 1009, 1661
MboII	GAAGA	9 cut(s)	691, 694, 697, 700, 703, 901, 937, 940, 959
MfeI	CAATTG	2 cut(s)	495, 504
MflI	RGATCY	2 cut(s)	38, 177
MhlI	GDGCHC	2 cut(s)	939, 1705
MluCI	AATT	9 cut(s)	47, 108, 200, 238, 495, 504, 530, 834, 965
MlyI	GAGTC	1 cut(s)	1455
MmeI	TCCRAC	3 cut(s)	569, 1101, 1551
MseI	TTAA	4 cut(s)	203, 273, 1119, 1197
MslI	CAYNNNNRTG	2 cut(s)	437, 942
MspA1I	CMGCKG	3 cut(s)	557, 1204, 1862
MspI	CCGG	1 cut(s)	1513
MspR9I	CCNGG	3 cut(s)	1240, 1375, 1638
MunI	CAATTG	2 cut(s)	495, 504
Mva1269I	GAATGC	1 cut(s)	1334
MvaI	CCWGG	3 cut(s)	1240, 1375, 1638
MwoI	GCNNNNNNNGC	6 cut(s)	500, 814, 1175, 1244, 1249, 1403
NheI	GCTAGC	1 cut(s)	490
NlaIV	GGNNCC	5 cut(s)	807, 1346, 1372, 1398, 1704
NmeAIII	GCCGAG	1 cut(s)	667
NmuCI	GTSAC	1 cut(s)	246
NspI	RCATGY	4 cut(s)	140, 436, 955, 1126
OliI	CACNNNNGTG	1 cut(s)	942
PaeI	GCATGC	1 cut(s)	436
PciI	ACATGT	1 cut(s)	951
PctI	GAATGC	1 cut(s)	1334
PfeI	GAWTC	2 cut(s)	1065, 1323
PflFI	GACNNNGTC	1 cut(s)	1522
PkrI	GCNGC	9 cut(s)	502, 556, 1045, 1058, 1135, 1203, 1405, 1620, 1861
PleI	GAGTC	1 cut(s)	1455
PpsI	GAGTC	1 cut(s)	1455
PscI	ACATGT	1 cut(s)	951
Psp6I	CCWGG	3 cut(s)	1238, 1373, 1636
PspEI	GGTNACC	1 cut(s)	1009
PspFI	CCCAGC	1 cut(s)	1698
PspGI	CCWGG	3 cut(s)	1238, 1373, 1636
PspN4I	GGNNCC	5 cut(s)	807, 1346, 1372, 1398, 1704
PspPI	GGNCC	6 cut(s)	654, 816, 898, 979, 1361, 1640
PstI	CTGCAG	2 cut(s)	1249, 1415
PsuI	RGATCY	2 cut(s)	38, 177
PsyI	GACNNNGTC	1 cut(s)	1522
PvuII	CAGCTG	2 cut(s)	557, 1204
RsaI	GTAC	3 cut(s)	1097, 1509, 1786
RsaNI	GTAC	3 cut(s)	1096, 1508, 1785
RseI	CAYNNNNRTG	2 cut(s)	437, 942
SaqAI	TTAA	4 cut(s)	203, 273, 1119, 1197
SatI	GCNGC	9 cut(s)	501, 555, 1044, 1057, 1134, 1202, 1404, 1619, 1860
Sau96I	GGNCC	6 cut(s)	654, 816, 898, 979, 1361, 1640
SchI	GAGTC	1 cut(s)	1455
ScrFI	CCNGG	3 cut(s)	1240, 1375, 1638
SduI	GDGCHC	2 cut(s)	939, 1705
SfaNI	GCATC	2 cut(s)	1225, 1249
SfcI	CTRYAG	2 cut(s)	1245, 1411
SinI	GGWCC	2 cut(s)	979, 1361
SmiMI	CAYNNNNRTG	2 cut(s)	437, 942
SmlI	CTYRAG	3 cut(s)	797, 1254, 1827
SmoI	CTYRAG	3 cut(s)	797, 1254, 1827
SphI	GCATGC	1 cut(s)	436
Sse9I	AATT	9 cut(s)	47, 108, 200, 238, 495, 504, 530, 834, 965
SsiI	CCGC	4 cut(s)	880, 977, 1056, 1860
SspI	AATATT	2 cut(s)	192, 1549
SspMI	CTAG	3 cut(s)	42, 491, 1137
StyD4I	CCNGG	3 cut(s)	1238, 1373, 1636
StyI	CCWWGG	1 cut(s)	1014
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	1023, 1326
TasI	AATT	9 cut(s)	47, 108, 200, 238, 495, 504, 530, 834, 965
TatI	WGTACW	2 cut(s)	1095, 1507
TauI	GCSGC	2 cut(s)	1059, 1862
TfiI	GAWTC	2 cut(s)	1065, 1323
Tru1I	TTAA	4 cut(s)	203, 273, 1119, 1197
Tru9I	TTAA	4 cut(s)	203, 273, 1119, 1197
TscAI	CASTG	6 cut(s)	72, 434, 1150, 1180, 1438, 1548
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	7 cut(s)	500, 554, 1043, 1133, 1201, 1403, 1618
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	8 cut(s)	219, 231, 455, 464, 978, 1057, 1506, 1589
TspGWI	ACGGA	3 cut(s)	46, 1523, 1643
TspRI	CASTG	6 cut(s)	72, 434, 1150, 1180, 1438, 1548
Tth111I	GACNNNGTC	1 cut(s)	1522
VpaK11BI	GGWCC	2 cut(s)	979, 1361
XapI	RAATTY	4 cut(s)	47, 530, 834, 965
XbaI	TCTAGA	1 cut(s)	41
XceI	RCATGY	4 cut(s)	140, 436, 955, 1126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1355
XspI	CTAG	3 cut(s)	42, 491, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.