Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003420

Physical Location & Seq

Genomic Coordinates Forward (+)

2371387 .. 2374676

Gene Structure 3290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41846

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGAAGTGCTGGTGAAAGTGGTTATGGTGCATACACCTATGAGGCTCTTGAGAGGGAGCCTTATTGGCCCTCAGAAAAACTCCGAATTTCCATTACTGGGGCTGGTGGCTTTATTGCCTCCCACATTGCCCGCCGATTGAAGAATGAGGGCCACTACATTATTGCCTCTGACTGGAAGAAGAATGAGCACATGAGTGAAGACATGTTCTGCCATGAATTCCATCTTGCGGACCTCAGGGTCATGGATAACTGCTTGAAGGTTACCAAGGATGTCGATCATGTGTTCAACCTTGCTGCTGATATGGGCGGCATGGGATTCATTCAGTCCAACCACTCTGTCATTATGTACAATAATACCATGATCAGCTTTAACATGCTGGAAGCTGCTAGGATCAGTGGAGTGAAAAGGTTATTCTATGCTTCCAGTGCTTGTATTTATCCCGAGTTTAAGCAGCTGGAAACCAATGTGAGCTTGAAGGAGGCTGATGCCTGGCCTGCAGAGCCTCAAGATGCTTATGGCTTAGAGAAACTTGCAACTGAGGAGTTGTGCAAGCACTACACCAAAGACTTTGGAATCGAATGCCGTATTGGAAGGTTCCACAACATCTATGGTCCTTTCGGAACCTGGAAAGGGGGCAGGGAGAAGGCTCCTGCTGCTTTCTGCAGAAAGGCTCTCACTTCCACTGATAAGTTTGAGATGTGGGGAGATGGACTCCAGACCCGATCCTTCACCTTTATTGATGAATGTGTTGAAGGTGTACTCCGGTTGACAAAGTCCGACTTCCGTGAGCCAGTGAATATTGGAAGCGATGAGATGGTTAGCATGAATGAGATGGCTGAGATTGTTCTTAGCTTTGAGAACAAGAAGCTGCCTATTCAGCACATTCCTGGACCTGAGGGTGTCCGTGGTCGTAACTCTGACAACACCCTGATCAAAGAGAAACTTGGCTGGGCTCCTACCATGAGGCTGAAGGATGGACTGAGGTTTACATACTTCTGGATCAAGGAACAGATTGAGAAAGAGAAAGCACAAGGTACTGACCTGTCGCTTTATGGGTCATCTAAGGTGGTGGGAACTCAAGCCCCAGTTCAACTTGGTTCACTTCGTGCCGCTGACGGCAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko00520 ko01100 ko01110 map00053 map00520 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

376

Amino Acids

42.36

Weight (kDa)

5.99

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	30 - 269	2.1e-45	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	32 - 329	1e-26	GDP-mannose 4,6 dehydratase
3Beta_HSD	PF01073	32 - 184	1.5e-09	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28840 AT5G28840
fragaria_vesca	FvH4_6g02980
malus_domestica	MD04G1224100.v1.1 MD04G1224200.v1.1 MD12G1240900.v1.1
prunus_persica	Prupe.1G025100_v2.0.a1 Prupe.1G025100_v2.0.a1 Prupe.6G342800_v2.0.a1
pyrus_communis	pycom04g19750
rosa_chinensis	RchiOBHm_Chr3g0451161 RchiOBHm_Chr4g0388911
rosa_laevigata	RLG00000010008 RLG00000010011 RLG00000025681 RLG00000025682
rosa_multiflora	Rmu_co8299443.1_g000001 Rmu_sc0005486.1_g000010 Rmu_ssc0000028.1_g000003
rosa_roxburghii	Rroxscaffold_5G00335220 Rroxscaffold_6G00428630
rosa_rugosa	Rorug02G0632400 Rorug02G0632500 Rorug03G0321000 Rorug03G0321000 Rorug03G0321100
rosa_samantha	Rh3AG034900 Rh3BG035300 Rh3CG033800 Rh3CG033900 Rh3DG034900 Rh4BG018800 Rh4CG028600 Rh4DG019300
rosa_wichuraiana	Rw3G002560 Rw4G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
AciI	CCGC	4 cut(s)	133, 230, 309, 1113
AclWI	GGATC	3 cut(s)	401, 720, 1010
AcsI	RAATTY	2 cut(s)	87, 218
AcuI	CTGAAG	1 cut(s)	992
AdeI	CACNNNGTG	1 cut(s)	1109
AfaI	GTAC	3 cut(s)	350, 762, 1039
AfiI	CCNNNNNNNGG	4 cut(s)	99, 174, 229, 633
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	6 cut(s)	142, 259, 289, 478, 755, 1094
AjnI	CCWGG	3 cut(s)	491, 626, 889
AjuI	GAANNNNNNNTTGG	2 cut(s)	573, 605
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	6 cut(s)	369, 386, 457, 474, 855, 871
AluI	AGCT	6 cut(s)	369, 386, 457, 474, 855, 871
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	401, 720, 1010
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	3 cut(s)	68, 151, 494
ApeKI	GCWGC	5 cut(s)	296, 386, 454, 656, 871
ApoI	RAATTY	2 cut(s)	87, 218
AspS9I	GGNCC	5 cut(s)	69, 151, 232, 614, 893
AsuHPI	GGTGA	2 cut(s)	26, 724
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	3 cut(s)	232, 614, 893
AxyI	CCTNAGG	2 cut(s)	236, 897
BanII	GRGCYC	1 cut(s)	958
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	5 cut(s)	283, 373, 466, 643, 858
BccI	CCATC	5 cut(s)	231, 704, 811, 829, 971
BceAI	ACGGC	1 cut(s)	570
BciT130I	CCWGG	3 cut(s)	493, 628, 891
BclI	TGATCA	2 cut(s)	363, 933
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	2 cut(s)	498, 664
BglI	GCCNNNNNGGC	1 cut(s)	67
BisI	GCNGC	7 cut(s)	297, 310, 387, 455, 657, 872, 1113
BlsI	GCNGC	7 cut(s)	298, 311, 388, 456, 658, 873, 1114
Bme1390I	CCNGG	3 cut(s)	493, 628, 891
Bme18I	GGWCC	3 cut(s)	232, 614, 893
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	5 cut(s)	69, 151, 232, 614, 893
BmiI	GGNNCC	5 cut(s)	60, 599, 625, 651, 957
BmrFI	CCNGG	3 cut(s)	493, 628, 891
BmrI	ACTGGG	2 cut(s)	108, 1082
BmsI	GCATC	2 cut(s)	478, 502
BmuI	ACTGGG	2 cut(s)	108, 1082
BpiI	GAAGAC	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	699, 731
BpmI	CTGGAG	1 cut(s)	701
BpuEI	CTTGAG	3 cut(s)	71, 492, 1065
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	267, 907
BsaWI	WCCGGW	1 cut(s)	765
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 174, 229, 633
Bse1I	ACTGG	5 cut(s)	103, 179, 426, 794, 1088
Bse21I	CCTNAGG	2 cut(s)	236, 897
Bse3DI	GCAATG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	3 cut(s)	493, 628, 891
BseDI	CCNNGG	2 cut(s)	267, 907
BseGI	GGATG	2 cut(s)	277, 982
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	4 cut(s)	99, 174, 229, 633
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	6 cut(s)	87, 250, 531, 831, 888, 974
BseNI	ACTGG	5 cut(s)	103, 179, 426, 794, 1088
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	5 cut(s)	283, 373, 466, 643, 858
BseYI	CCCAGC	1 cut(s)	951
BshFI	GGCC	3 cut(s)	70, 153, 496
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	766
BslI	CCNNNNNNNGG	4 cut(s)	99, 174, 229, 633
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	3 cut(s)	70, 153, 496
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	192, 958
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	6 cut(s)	277, 363, 393, 725, 933, 1002
BspACI	CCGC	4 cut(s)	133, 230, 309, 1113
BspANI	GGCC	3 cut(s)	70, 153, 496
BspCNI	CTCAG	6 cut(s)	86, 249, 532, 832, 889, 975
BspLI	GGNNCC	5 cut(s)	60, 599, 625, 651, 957
BspMAI	CTGCAG	2 cut(s)	502, 668
BspPI	GGATC	3 cut(s)	401, 720, 1010
BsrDI	GCAATG	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	5 cut(s)	103, 179, 426, 794, 1088
BssECI	CCNNGG	2 cut(s)	267, 907
BssMI	GATC	6 cut(s)	277, 363, 393, 725, 933, 1002
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	3 cut(s)	493, 628, 891
BstAUI	TGTACA	1 cut(s)	348
BstC8I	GCNNGC	3 cut(s)	133, 498, 554
BstDEI	CTNAG	9 cut(s)	73, 236, 523, 540, 840, 851, 897, 983, 1065
BstDSI	CCRYGG	1 cut(s)	907
BstEII	GGTNACC	1 cut(s)	262
BstF5I	GGATG	2 cut(s)	277, 982
BstKTI	GATC	6 cut(s)	280, 366, 396, 728, 936, 1005
BstMBI	GATC	6 cut(s)	277, 363, 393, 725, 933, 1002
BstMWI	GCNNNNNNNGC	6 cut(s)	67, 428, 497, 502, 656, 880
BstNI	CCWGG	3 cut(s)	493, 628, 891
BstNSI	RCATGY	2 cut(s)	208, 379
BstPI	GGTNACC	1 cut(s)	262
BstSCI	CCNGG	3 cut(s)	491, 626, 889
BstSFI	CTRYAG	2 cut(s)	498, 664
BstV1I	GCAGC	5 cut(s)	283, 373, 466, 643, 858
BstV2I	GAAGAC	1 cut(s)	207
Bsu36I	CCTNAGG	2 cut(s)	236, 897
BsuRI	GGCC	3 cut(s)	70, 153, 496
BtgI	CCRYGG	1 cut(s)	907
BtgZI	GCGATG	1 cut(s)	825
BtsCI	GGATG	2 cut(s)	277, 982
BtsIMutI	CAGTG	4 cut(s)	403, 433, 684, 801
Cac8I	GCNNGC	3 cut(s)	133, 498, 554
Cfr13I	GGNCC	5 cut(s)	69, 151, 232, 614, 893
Csp6I	GTAC	3 cut(s)	349, 761, 1038
CviQI	GTAC	3 cut(s)	349, 761, 1038
DdeI	CTNAG	9 cut(s)	73, 236, 523, 540, 840, 851, 897, 983, 1065
DpnI	GATC	6 cut(s)	279, 365, 395, 727, 935, 1004
DpnII	GATC	6 cut(s)	277, 363, 393, 725, 933, 1002
DraIII	CACNNNGTG	1 cut(s)	1109
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	958
Eco47I	GGWCC	3 cut(s)	232, 614, 893
Eco57I	CTGAAG	1 cut(s)	992
Eco81I	CCTNAGG	2 cut(s)	236, 897
Eco88I	CYCGRG	1 cut(s)	443
Eco91I	GGTNACC	1 cut(s)	262
EcoO65I	GGTNACC	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	218
EcoRII	CCWGG	3 cut(s)	491, 626, 889
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	958
ErhI	CCWWGG	1 cut(s)	267
FalI	AAGNNNNNCTT	4 cut(s)	767, 799, 930, 962
FauI	CCCGC	1 cut(s)	140
FbaI	TGATCA	2 cut(s)	363, 933
Fnu4HI	GCNGC	7 cut(s)	297, 310, 387, 455, 657, 872, 1113
FokI	GGATG	2 cut(s)	284, 989
FriOI	GRGCYC	1 cut(s)	958
Fsp4HI	GCNGC	7 cut(s)	297, 310, 387, 455, 657, 872, 1113
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	7 cut(s)	297, 310, 387, 455, 657, 872, 1113
GsaI	CCCAGC	1 cut(s)	955
GsuI	CTGGAG	1 cut(s)	701
HaeIII	GGCC	3 cut(s)	70, 153, 496
HapII	CCGG	1 cut(s)	766
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HinfI	GANTC	3 cut(s)	318, 576, 714
HpaII	CCGG	1 cut(s)	766
HphI	GGTGA	2 cut(s)	26, 724
Hpy166II	GTNNAC	4 cut(s)	761, 771, 990, 1103
Hpy188I	TCNGA	6 cut(s)	76, 86, 172, 623, 781, 922
Hpy188III	TCNNGA	5 cut(s)	50, 443, 509, 718, 1000
Hpy8I	GTNNAC	4 cut(s)	761, 771, 990, 1103
HpyAV	CCTTC	7 cut(s)	253, 472, 588, 640, 739, 749, 967
HpyCH4V	TGCA	5 cut(s)	32, 500, 536, 552, 666
HpyF10VI	GCNNNNNNNGC	6 cut(s)	67, 428, 497, 502, 656, 880
HpyF3I	CTNAG	9 cut(s)	73, 236, 523, 540, 840, 851, 897, 983, 1065
Ksp22I	TGATCA	2 cut(s)	363, 933
Kzo9I	GATC	6 cut(s)	277, 363, 393, 725, 933, 1002
LmnI	GCTCC	3 cut(s)	58, 655, 961
Lsp1109I	GCAGC	5 cut(s)	283, 373, 466, 643, 858
LweI	GCATC	2 cut(s)	478, 502
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	262, 914
MalI	GATC	6 cut(s)	279, 365, 395, 727, 935, 1004
MboI	GATC	6 cut(s)	277, 363, 393, 725, 933, 1002
MboII	GAAGA	4 cut(s)	154, 190, 193, 212
MhlI	GDGCHC	2 cut(s)	192, 958
MluCI	AATT	2 cut(s)	87, 218
MlyI	GAGTC	1 cut(s)	708
MmeI	TCCRAC	2 cut(s)	354, 804
MseI	TTAA	2 cut(s)	372, 450
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	2 cut(s)	457, 1115
MspI	CCGG	1 cut(s)	766
MspR9I	CCNGG	3 cut(s)	493, 628, 891
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	3 cut(s)	493, 628, 891
MwoI	GCNNNNNNNGC	6 cut(s)	67, 428, 497, 502, 656, 880
NdeII	GATC	6 cut(s)	277, 363, 393, 725, 933, 1002
NlaIV	GGNNCC	5 cut(s)	60, 599, 625, 651, 957
NspI	RCATGY	2 cut(s)	208, 379
OliI	CACNNNNGTG	1 cut(s)	195
PciI	ACATGT	1 cut(s)	204
PctI	GAATGC	1 cut(s)	587
PfeI	GAWTC	2 cut(s)	318, 576
PflFI	GACNNNGTC	1 cut(s)	775
PfoI	TCCNGGA	1 cut(s)	889
PkrI	GCNGC	7 cut(s)	298, 311, 388, 456, 658, 873, 1114
PleI	GAGTC	1 cut(s)	708
PpsI	GAGTC	1 cut(s)	708
PscI	ACATGT	1 cut(s)	204
Psp6I	CCWGG	3 cut(s)	491, 626, 889
PspEI	GGTNACC	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	951
PspGI	CCWGG	3 cut(s)	491, 626, 889
PspN4I	GGNNCC	5 cut(s)	60, 599, 625, 651, 957
PspPI	GGNCC	5 cut(s)	69, 151, 232, 614, 893
PstI	CTGCAG	2 cut(s)	502, 668
PsyI	GACNNNGTC	1 cut(s)	775
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	3 cut(s)	350, 762, 1039
RsaNI	GTAC	3 cut(s)	349, 761, 1038
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	372, 450
SatI	GCNGC	7 cut(s)	297, 310, 387, 455, 657, 872, 1113
Sau3AI	GATC	6 cut(s)	277, 363, 393, 725, 933, 1002
Sau96I	GGNCC	5 cut(s)	69, 151, 232, 614, 893
SchI	GAGTC	1 cut(s)	708
ScrFI	CCNGG	3 cut(s)	493, 628, 891
SduI	GDGCHC	2 cut(s)	192, 958
SfaNI	GCATC	2 cut(s)	478, 502
SfcI	CTRYAG	2 cut(s)	498, 664
SinI	GGWCC	3 cut(s)	232, 614, 893
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	3 cut(s)	50, 507, 1080
SmoI	CTYRAG	3 cut(s)	50, 507, 1080
Sse9I	AATT	2 cut(s)	87, 218
SsiI	CCGC	4 cut(s)	133, 230, 309, 1113
SspI	AATATT	1 cut(s)	802
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	3 cut(s)	491, 626, 889
StyI	CCWWGG	1 cut(s)	267
TaqI	TCGA	2 cut(s)	276, 579
TasI	AATT	2 cut(s)	87, 218
TatI	WGTACW	2 cut(s)	348, 760
TauI	GCSGC	2 cut(s)	312, 1115
TfiI	GAWTC	2 cut(s)	318, 576
Tru1I	TTAA	2 cut(s)	372, 450
Tru9I	TTAA	2 cut(s)	372, 450
TscAI	CASTG	4 cut(s)	403, 433, 691, 801
TseI	GCWGC	5 cut(s)	296, 386, 454, 656, 871
TspDTI	ATGAA	4 cut(s)	231, 310, 759, 842
TspGWI	ACGGA	2 cut(s)	776, 896
TspRI	CASTG	4 cut(s)	403, 433, 691, 801
Tth111I	GACNNNGTC	1 cut(s)	775
VpaK11BI	GGWCC	3 cut(s)	232, 614, 893
XapI	RAATTY	2 cut(s)	87, 218
XceI	RCATGY	2 cut(s)	208, 379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.