Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005486.1

Orthogroup ID

OG0003420

Physical Location & Seq

Genomic Coordinates Forward (+)

45188 .. 46041

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005486.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atggataactgtttgaaggttactgctggtgttaaccatgttttcaaccttgctgctgacatgggaggtatggggttcattcagtccaaccattctgtcattatgtataacaacacaatgatcagctttaatatgctcgaggcagcaaggatcaatggagctaagaggttcttttatgcttctagtgcttgcatttaccctgaattcaaacagttggatactaatgtgagcttgaaggagtctgatgcttggcctgcagaggtttttactttcgcagaaagcttatgctataaaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko00520 ko01100 ko01110 map00053 map00520 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

99

Amino Acids

11.04

Weight (kDa)

5.51

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28840 AT5G28840
fragaria_vesca	FvH4_6g02980
malus_domestica	MD04G1224100.v1.1 MD04G1224200.v1.1 MD12G1240900.v1.1
prunus_persica	Prupe.1G025100_v2.0.a1 Prupe.1G025100_v2.0.a1 Prupe.6G342800_v2.0.a1
pyrus_communis	pycom04g19750
rosa_chinensis	RchiOBHm_Chr3g0451161 RchiOBHm_Chr4g0388911
rosa_laevigata	RLG00000010008 RLG00000010011 RLG00000025681 RLG00000025682
rosa_multiflora	Rmu_co8299443.1_g000001 Rmu_sc0005486.1_g000010 Rmu_ssc0000028.1_g000003
rosa_roxburghii	Rroxscaffold_5G00335220 Rroxscaffold_6G00428630
rosa_rugosa	Rorug02G0632400 Rorug02G0632500 Rorug03G0321000 Rorug03G0321000 Rorug03G0321100
rosa_samantha	Rh3AG034900 Rh3BG035300 Rh3CG033800 Rh3CG033900 Rh3DG034900 Rh4BG018800 Rh4CG028600 Rh4DG019300
rosa_wichuraiana	Rw3G002560 Rw4G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	16, 46, 208, 235
AluBI	AGCT	4 cut(s)	126, 161, 231, 282
AluI	AGCT	4 cut(s)	126, 161, 231, 282
AlwI	GGATC	1 cut(s)	158
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	53, 143
ApoI	RAATTY	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	137
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BbvI	GCAGC	2 cut(s)	40, 155
BciVI	GTATCC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	120
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	54, 144
BlsI	GCNGC	2 cut(s)	55, 145
BmeT110I	CYCGRG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	40, 155
BshFI	GGCC	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	137
BsnI	GGCC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	120, 150
BspANI	GGCC	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	158
BssMI	GATC	2 cut(s)	120, 150
Bst4CI	ACNGT	2 cut(s)	11, 213
BstC8I	GCNNGC	2 cut(s)	190, 255
BstDEI	CTNAG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	123, 153
BstMBI	GATC	2 cut(s)	120, 150
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 254
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	40, 155
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	190, 255
CviAII	CATG	2 cut(s)	38, 61
CviJI	RGCY	5 cut(s)	126, 161, 231, 253, 282
CviKI_1	RGCY	5 cut(s)	126, 161, 231, 253, 282
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	122, 152
DpnII	GATC	2 cut(s)	120, 150
Eco88I	CYCGRG	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	203
FaeI	CATG	2 cut(s)	41, 64
FaiI	YATR	9 cut(s)	39, 62, 71, 104, 108, 134, 177, 286, 291
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	2 cut(s)	37, 60
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	54, 144
Fsp4HI	GCNGC	2 cut(s)	54, 144
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	2 cut(s)	54, 144
HaeIII	GGCC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	41, 64
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	1 cut(s)	239
HpaI	GTTAAC	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	10, 229
HpyCH4III	ACNGT	2 cut(s)	11, 213
HpyCH4V	TGCA	2 cut(s)	192, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 254
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	41, 64
Ksp22I	TGATCA	1 cut(s)	120
KspAI	GTTAAC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	120, 150
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	3 cut(s)	12, 213, 267
Lsp1109I	GCAGC	2 cut(s)	40, 155
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	122, 152
MboI	GATC	2 cut(s)	120, 150
MluCI	AATT	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	2 cut(s)	111, 195
MnlI	CCTC	4 cut(s)	59, 133, 159, 253
MseI	TTAA	3 cut(s)	33, 129, 298
MwoI	GCNNNNNNNGC	2 cut(s)	185, 254
NdeII	GATC	2 cut(s)	120, 150
NlaIII	CATG	2 cut(s)	41, 64
PaeR7I	CTCGAG	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	55, 145
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PspXI	VCTCGAGB	1 cut(s)	137
PstI	CTGCAG	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	33, 129, 298
SatI	GCNGC	2 cut(s)	54, 144
Sau3AI	GATC	2 cut(s)	120, 150
SchI	GAGTC	1 cut(s)	248
SetI	ASST	9 cut(s)	21, 51, 70, 128, 163, 170, 233, 264, 284
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	203
SspMI	CTAG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	11, 213
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	203
Tru1I	TTAA	3 cut(s)	33, 129, 298
Tru9I	TTAA	3 cut(s)	33, 129, 298
TseI	GCWGC	2 cut(s)	53, 143
TspDTI	ATGAA	1 cut(s)	67
XapI	RAATTY	1 cut(s)	203
XhoI	CTCGAG	1 cut(s)	137
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.