Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003420

Physical Location & Seq

Genomic Coordinates Reverse (-)

21404736 .. 21406671

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGACTGAAGATATGTTCTGCCATGAATTCCATCTTGCTGACCTCAGGGTCATGGATAATTGCTTGAAGGTTACTAAGAATGTTGACCATGTGTTCAACCTCGCAGCTGATATGGGCGGAATGGGCTTCATTCAGTCCAACCATTCCGTCATCTTTTATAATAATACCATGATTAGCTTCAACATGGTTGAAGCTTCTCGGATCAATGATGTGAAGAGGTTTTTCTATGCTTCAAGTGCTTGTATTTATCCTGAATTTAAGCAGCTGGAAACCAATGTGAGCCTGAAGGAGTCTGATGCTTGGCCTGCAGAGCCTCAAGATGCTTATGGCTTGGAGAAGCTTGCAACTGAGGAATTGTGCAAGCACTACACCAAGGACTTCGGAATTGAGTGCCGTATTGGAAGGTTCCATAACATTTATGGTCCTTTCGGAACCTGGAAAGGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGCAGAAAGGCTCTCACTGCCACTGATAAGTTTGAGATGTGGGGAGATGGACTTCAGACTCGATCCTTCACTTTTATTGATGAATGTGTAGAAGGTGTTCTTCGGTTGACGAAGTCAGACTTCCGCGAGCCAGTGAATATTGGAAGTGATGAGATGGTTAGCATGAATGAGATGGCTGAGATGGTTCTTAGCTTTGAGGACAAGAAGCTGCCTATCCAGCACATTCCTGGGCCAGAGGGTGTCCGTGGTCGTAACTCGGACAACACGCTGATCAAAGAGAAACTTGGCTGGGCGCCTACCATGAGGTTGAAGGATGGTCTGAGAATTACGTACTTCTGGATCAACCAACAGATTGAGAAAGAGAAGGCACAAGGTGCTGACCTCTCGGTGTATGGCTCATCTAAGGTTGTCGGTACCCAAGCCCCAGTTCAACTTGGTTCGCTGCGTGCTGCTGATGGTAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko00520 ko01100 ko01110 map00053 map00520 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

313

Amino Acids

35.28

Weight (kDa)

5.62

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28840 AT5G28840
fragaria_vesca	FvH4_6g02980
malus_domestica	MD04G1224100.v1.1 MD04G1224200.v1.1 MD12G1240900.v1.1
prunus_persica	Prupe.1G025100_v2.0.a1 Prupe.1G025100_v2.0.a1 Prupe.6G342800_v2.0.a1
pyrus_communis	pycom04g19750
rosa_chinensis	RchiOBHm_Chr3g0451161 RchiOBHm_Chr4g0388911
rosa_laevigata	RLG00000010008 RLG00000010011 RLG00000025681 RLG00000025682
rosa_multiflora	Rmu_co8299443.1_g000001 Rmu_sc0005486.1_g000010 Rmu_ssc0000028.1_g000003
rosa_roxburghii	Rroxscaffold_5G00335220 Rroxscaffold_6G00428630
rosa_rugosa	Rorug02G0632400 Rorug02G0632500 Rorug03G0321000 Rorug03G0321000 Rorug03G0321100
rosa_samantha	Rh3AG034900 Rh3BG035300 Rh3CG033800 Rh3CG033900 Rh3DG034900 Rh4BG018800 Rh4CG028600 Rh4DG019300
rosa_wichuraiana	Rw3G002560 Rw4G001840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AasI	GACNNNNNNGTC	1 cut(s)	47
Acc65I	GGTACC	1 cut(s)	884
AccB1I	GGYRCC	2 cut(s)	763, 884
AccII	CGCG	1 cut(s)	597
AciI	CCGC	2 cut(s)	117, 595
AclWI	GGATC	3 cut(s)	209, 528, 818
AcsI	RAATTY	2 cut(s)	26, 254
AcuI	CTGAAG	3 cut(s)	27, 305, 509
AcyI	GRCGYC	1 cut(s)	764
AdeI	CACNNNGTG	1 cut(s)	845
AfaI	GTAC	2 cut(s)	803, 886
AgsI	TTSAA	7 cut(s)	67, 97, 181, 191, 234, 781, 902
AjnI	CCWGG	2 cut(s)	434, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	882, 914
AluBI	AGCT	7 cut(s)	107, 177, 194, 265, 340, 663, 679
AluI	AGCT	7 cut(s)	107, 177, 194, 265, 340, 663, 679
AlwI	GGATC	3 cut(s)	209, 528, 818
AoxI	GGCC	2 cut(s)	302, 701
ApeKI	GCWGC	6 cut(s)	104, 262, 464, 679, 913, 920
ApoI	RAATTY	2 cut(s)	26, 254
Asp700I	GAANNNNTTC	1 cut(s)	567
Asp718I	GGTACC	1 cut(s)	884
AspLEI	GCGC	1 cut(s)	766
AspS9I	GGNCC	2 cut(s)	422, 701
AvaII	GGWCC	1 cut(s)	422
AxyI	CCTNAGG	1 cut(s)	44
BanI	GGYRCC	2 cut(s)	763, 884
BbvI	GCAGC	6 cut(s)	116, 274, 451, 666, 900, 907
BccI	CCATC	7 cut(s)	39, 512, 619, 637, 646, 779, 920
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	2 cut(s)	436, 699
BclI	TGATCA	1 cut(s)	741
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	767
BisI	GCNGC	6 cut(s)	105, 263, 465, 680, 914, 921
BlsI	GCNGC	6 cut(s)	106, 264, 466, 681, 915, 922
Bme1390I	CCNGG	2 cut(s)	436, 699
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	2 cut(s)	422, 701
BmiI	GGNNCC	5 cut(s)	407, 433, 459, 765, 886
BmrFI	CCNGG	2 cut(s)	436, 699
BmrI	ACTGGG	1 cut(s)	890
BmsI	GCATC	2 cut(s)	286, 310
BmuI	ACTGGG	1 cut(s)	890
BpuEI	CTTGAG	1 cut(s)	300
BsaAI	YACGTR	1 cut(s)	801
BsaHI	GRCGYC	1 cut(s)	764
BsaJI	CCNNGG	3 cut(s)	372, 698, 715
Bse1I	ACTGG	2 cut(s)	602, 896
Bse21I	CCTNAGG	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	436, 699
BseDI	CCNNGG	3 cut(s)	372, 698, 715
BseGI	GGATG	1 cut(s)	790
BseMII	CTCAG	4 cut(s)	58, 339, 639, 782
BseNI	ACTGG	2 cut(s)	602, 896
BseXI	GCAGC	6 cut(s)	116, 274, 451, 666, 900, 907
BseYI	CCCAGC	1 cut(s)	759
Bsh1236I	CGCG	1 cut(s)	597
BshFI	GGCC	2 cut(s)	304, 703
BshNI	GGYRCC	2 cut(s)	763, 884
BsnI	GGCC	2 cut(s)	304, 703
Bsp143I	GATC	4 cut(s)	201, 533, 741, 810
BspACI	CCGC	2 cut(s)	117, 595
BspANI	GGCC	2 cut(s)	304, 703
BspCNI	CTCAG	4 cut(s)	57, 340, 640, 783
BspFNI	CGCG	1 cut(s)	597
BspLI	GGNNCC	5 cut(s)	407, 433, 459, 765, 886
BspMAI	CTGCAG	1 cut(s)	310
BspPI	GGATC	3 cut(s)	209, 528, 818
BspT107I	GGYRCC	2 cut(s)	763, 884
BsrI	ACTGG	2 cut(s)	602, 896
BssECI	CCNNGG	3 cut(s)	372, 698, 715
BssMI	GATC	4 cut(s)	201, 533, 741, 810
BssNI	GRCGYC	1 cut(s)	764
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	436, 699
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	764
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstBAI	YACGTR	1 cut(s)	801
BstC8I	GCNNGC	5 cut(s)	306, 342, 362, 599, 918
BstDEI	CTNAG	7 cut(s)	44, 75, 348, 648, 659, 791, 873
BstDSI	CCRYGG	1 cut(s)	715
BstF5I	GGATG	1 cut(s)	790
BstFNI	CGCG	1 cut(s)	597
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	1 cut(s)	766
BstKTI	GATC	4 cut(s)	204, 536, 744, 813
BstMBI	GATC	4 cut(s)	201, 533, 741, 810
BstMWI	GCNNNNNNNGC	8 cut(s)	123, 236, 305, 310, 464, 488, 688, 845
BstNI	CCWGG	2 cut(s)	436, 699
BstSCI	CCNGG	2 cut(s)	434, 697
BstSFI	CTRYAG	1 cut(s)	306
BstSNI	TACGTA	1 cut(s)	801
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	6 cut(s)	116, 274, 451, 666, 900, 907
Bsu36I	CCTNAGG	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	304, 703
BtgI	CCRYGG	1 cut(s)	715
BtsCI	GGATG	1 cut(s)	790
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	3 cut(s)	486, 492, 609
Cac8I	GCNNGC	5 cut(s)	306, 342, 362, 599, 918
CfoI	GCGC	1 cut(s)	766
Cfr13I	GGNCC	2 cut(s)	422, 701
Csp6I	GTAC	2 cut(s)	802, 885
CviAII	CATG	7 cut(s)	23, 52, 89, 169, 184, 634, 772
CviQI	GTAC	2 cut(s)	802, 885
DdeI	CTNAG	7 cut(s)	44, 75, 348, 648, 659, 791, 873
DinI	GGCGCC	1 cut(s)	765
DpnI	GATC	4 cut(s)	203, 535, 743, 812
DpnII	GATC	4 cut(s)	201, 533, 741, 810
DraIII	CACNNNGTG	1 cut(s)	845
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	132
Eco105I	TACGTA	1 cut(s)	801
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	3 cut(s)	27, 305, 509
Eco81I	CCTNAGG	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	434, 697
EcoT14I	CCWWGG	1 cut(s)	372
EgeI	GGCGCC	1 cut(s)	765
EheI	GGCGCC	1 cut(s)	765
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	7 cut(s)	26, 55, 92, 172, 187, 637, 775
FalI	AAGNNNNNCTT	6 cut(s)	555, 587, 575, 607, 738, 770
FatI	CATG	7 cut(s)	22, 51, 88, 168, 183, 633, 771
FbaI	TGATCA	1 cut(s)	741
Fnu4HI	GCNGC	6 cut(s)	105, 263, 465, 680, 914, 921
FokI	GGATG	1 cut(s)	797
Fsp4HI	GCNGC	6 cut(s)	105, 263, 465, 680, 914, 921
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	6 cut(s)	105, 263, 465, 680, 914, 921
GsaI	CCCAGC	1 cut(s)	763
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	2 cut(s)	304, 703
HhaI	GCGC	1 cut(s)	766
Hin1I	GRCGYC	1 cut(s)	764
Hin1II	CATG	7 cut(s)	26, 55, 92, 172, 187, 637, 775
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HincII	GTYRAC	2 cut(s)	85, 579
HindII	GTYRAC	2 cut(s)	85, 579
HindIII	AAGCTT	2 cut(s)	192, 338
HinfI	GANTC	2 cut(s)	290, 529
Hpy166II	GTNNAC	2 cut(s)	85, 579
Hpy188I	TCNGA	8 cut(s)	201, 295, 383, 431, 528, 589, 730, 792
Hpy188III	TCNNGA	3 cut(s)	251, 317, 808
Hpy8I	GTNNAC	2 cut(s)	85, 579
HpyAV	CCTTC	9 cut(s)	61, 280, 396, 441, 448, 547, 557, 775, 829
HpyCH4IV	ACGT	1 cut(s)	800
HpyCH4V	TGCA	4 cut(s)	308, 344, 360, 474
HpyF10VI	GCNNNNNNNGC	8 cut(s)	123, 236, 305, 310, 464, 488, 688, 845
HpyF3I	CTNAG	7 cut(s)	44, 75, 348, 648, 659, 791, 873
HpySE526I	ACGT	1 cut(s)	800
Hsp92I	GRCGYC	1 cut(s)	764
Hsp92II	CATG	7 cut(s)	26, 55, 92, 172, 187, 637, 775
HspAI	GCGC	1 cut(s)	764
KasI	GGCGCC	1 cut(s)	763
KpnI	GGTACC	1 cut(s)	888
Ksp22I	TGATCA	1 cut(s)	741
Kzo9I	GATC	4 cut(s)	201, 533, 741, 810
LmnI	GCTCC	1 cut(s)	463
Lsp1109I	GCAGC	6 cut(s)	116, 274, 451, 666, 900, 907
LweI	GCATC	2 cut(s)	286, 310
MaeII	ACGT	1 cut(s)	800
MaeIII	GTNAC	2 cut(s)	70, 722
MalI	GATC	4 cut(s)	203, 535, 743, 812
MboI	GATC	4 cut(s)	201, 533, 741, 810
MboII	GAAGA	3 cut(s)	20, 226, 563
MluCI	AATT	6 cut(s)	26, 58, 254, 353, 384, 795
Mly113I	GGCGCC	1 cut(s)	764
MlyI	GAGTC	2 cut(s)	299, 523
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	9 cut(s)	53, 110, 210, 324, 343, 661, 700, 768, 863
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	107, 265
MspR9I	CCNGG	2 cut(s)	436, 699
MvaI	CCWGG	2 cut(s)	436, 699
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	8 cut(s)	123, 236, 305, 310, 464, 488, 688, 845
NarI	GGCGCC	1 cut(s)	764
NdeII	GATC	4 cut(s)	201, 533, 741, 810
NlaIII	CATG	7 cut(s)	26, 55, 92, 172, 187, 637, 775
NlaIV	GGNNCC	5 cut(s)	407, 433, 459, 765, 886
PdmI	GAANNNNTTC	1 cut(s)	567
PflFI	GACNNNGTC	1 cut(s)	583
PkrI	GCNGC	6 cut(s)	106, 264, 466, 681, 915, 922
PleI	GAGTC	2 cut(s)	298, 523
PluTI	GGCGCC	1 cut(s)	767
PpsI	GAGTC	2 cut(s)	298, 523
Ppu21I	YACGTR	1 cut(s)	801
PsiI	TTATAA	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	434, 697
PspFI	CCCAGC	1 cut(s)	759
PspGI	CCWGG	2 cut(s)	434, 697
PspN4I	GGNNCC	5 cut(s)	407, 433, 459, 765, 886
PspPI	GGNCC	2 cut(s)	422, 701
PsrI	GAACNNNNNNTAC	2 cut(s)	552, 584
PstI	CTGCAG	1 cut(s)	310
PsyI	GACNNNGTC	1 cut(s)	583
PvuII	CAGCTG	2 cut(s)	107, 265
RsaI	GTAC	2 cut(s)	803, 886
RsaNI	GTAC	2 cut(s)	802, 885
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	6 cut(s)	105, 263, 465, 680, 914, 921
Sau3AI	GATC	4 cut(s)	201, 533, 741, 810
Sau96I	GGNCC	2 cut(s)	422, 701
SchI	GAGTC	2 cut(s)	299, 523
ScrFI	CCNGG	2 cut(s)	436, 699
SfaNI	GCATC	2 cut(s)	286, 310
SfcI	CTRYAG	1 cut(s)	306
SfoI	GGCGCC	1 cut(s)	765
SinI	GGWCC	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SnaBI	TACGTA	1 cut(s)	801
Sse9I	AATT	6 cut(s)	26, 58, 254, 353, 384, 795
SsiI	CCGC	2 cut(s)	117, 595
SspDI	GGCGCC	1 cut(s)	763
SspI	AATATT	1 cut(s)	610
StyD4I	CCNGG	2 cut(s)	434, 697
StyI	CCWWGG	1 cut(s)	372
TaiI	ACGT	1 cut(s)	803
TaqI	TCGA	1 cut(s)	532
TasI	AATT	6 cut(s)	26, 58, 254, 353, 384, 795
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	3 cut(s)	493, 499, 609
TseI	GCWGC	6 cut(s)	104, 262, 464, 679, 913, 920
TspDTI	ATGAA	4 cut(s)	39, 118, 567, 650
TspGWI	ACGGA	2 cut(s)	136, 704
TspRI	CASTG	3 cut(s)	493, 499, 609
Tth111I	GACNNNGTC	1 cut(s)	583
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	2 cut(s)	26, 254
XcmI	CCANNNNNNNNNTGG	2 cut(s)	416, 695
XmnI	GAANNNNTTC	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.