Prupe.7G240400_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
20706308 .. 20707998
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G240400.1

Sequence Viewer

Length: 1488 bp
ATGGGGTTAGATCATGTCCCATTTACTAGTGCAGTTTCAGCTTGCGGTCATGAAATGAATTTAGGACTTGGGAAACAGATACATGGCTTGACGATTAAATCAGGATATGGAAGTCATGTTTCAGTTTGTAATGTATTGATCTCGACATATTCAAAATGTGAGGTTATTGAAGATGCAAAAGTAGTCTTTCATTGCATGAATGATCGCAACGTAGTGTCTTGGACGACTATGATTTTTATAGACGAAGAAGATGTCATCTCTCTATTTGATGAGATGAGATTGGATGGAGTATATCCAAATGATGTTACATTTGTTGGACTAATCCATGCTATATCAATTAGGAAGTTGGTAGCAGAAGGCGAAATGATTCATGGCTTGATTACCATGTATGCTAAGTTTGAGTCCATAAAGAAGATCGTCATCAAAGTTTTTGAGGAGTTAAACAGTAGAGAAATCATAACGTGGAATGCTTTGATTTCAGGGTTTGCTCAGAACAGGTTGTGTCAAGATGCACTAAAAACATTCTTGGTAGCAACTATGGAGTCGAGGCCAAACAATTACACATTTGGTAGTGTCTTGAGTGCAATTGGTGATGCTCAGGATATTTCTCTGAAATTTGGCCAACGATGCCACTCTTCCTTGATCAAACTTGGATTAGTGACTGACCCAATTATCGCAGGTGCTCTTCTTGATATGTATGCAAAGCGAGGAAGCATTTGTGAGTCCAAAAGAGTTTTCAGTGAGACGCCTCATAAAAGTCAGTTTGCTTGGACTGCAATAATATCTGCATATGCTGGGCATGGAGACTATGACTCGGTGATAGAATTGTTCAAGGAGATGGAGAAAGAAGGGGTAAGACCAGATTCGGTCACATTTCTTTCTTTTCTTTCTATACTAACAGCATGCAGCAGAAAGGGAATGGTGGAGATGGGCCGGCACCTCTTTCACTCAATGGTGAAAGACTATCATATTGAACCATCTCCTCAACATTATTCAAGTATGGTGGACATGTTGGGACGGGCAGGGAAATTGGAGGAAGCAGAGGAATTGATGAGTCAGATCCCGGGACAGCCAGGGTTTTCGTTGTTGCAAAGCCTGCTTGGGGCTTGCAGGATCCATGGGAATGTGGAGATGGAGGAGAGAGTAGCCGATAGATTGATGAGATTGGAACCAATGGAATCAGGTTCTTTTGTGTTGATGTCCAACTTGTATGCTGAGAAAGGGGACTGGGAAATGGTAGCAAAAGTTAGGAAAGGGATGAGAGATAAAGGAGTGAGAAAGGAAGTGGGATATAGTTGGGTGGATACTGGCGATGCTGATGGTTCCTTATATTTGCATGGGTTTTCATCAGGTGATAAATCCCACCCACAGTCTGGGGAGATATGTAGAATGGCAAAATGTCTAGGATTAGAGATGAAAATTTTGAGAGAGAACATGTGGGAGACAAAATCACTGAAAATGGACTCCTCCTCAAGGCCCTCACTTTGA

Protein Analysis

496

Amino Acids

55.18

Weight (kDa)

5.96

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 668
Acc36I ACCTGC 1 cut(s) 668
AccB1I GGYRCC 1 cut(s) 936
AccB7I CCANNNNNTGG 1 cut(s) 1373
AciI CCGC 1 cut(s) 45
AclWI GGATC 3 cut(s) 1054, 1108, 1121
AcoI YGGCCR 1 cut(s) 619
AcsI RAATTY 3 cut(s) 58, 614, 1419
AcyI GRCGYC 1 cut(s) 746
AfiI CCNNNNNNNGG 3 cut(s) 1102, 1373, 1473
AflIII ACRYGT 2 cut(s) 1008, 1434
AgsI TTSAA 5 cut(s) 153, 170, 832, 974, 996
AhlI ACTAGT 1 cut(s) 26
AjnI CCWGG 1 cut(s) 1072
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 3 cut(s) 737, 798, 1436
AlwI GGATC 3 cut(s) 1054, 1108, 1121
Ama87I CYCGRG 1 cut(s) 1063
AoxI GGCC 4 cut(s) 548, 619, 931, 1475
ApeKI GCWGC 1 cut(s) 906
ApoI RAATTY 3 cut(s) 58, 614, 1419
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 931, 1476
AsuC2I CCSGG 2 cut(s) 1064, 1065
AsuHPI GGTGA 4 cut(s) 602, 829, 967, 1364
AvaI CYCGRG 1 cut(s) 1063
BalI TGGCCA 1 cut(s) 621
BamHI GGATCC 1 cut(s) 1113
BanI GGYRCC 1 cut(s) 936
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 1 cut(s) 918
BccI CCATC 6 cut(s) 278, 832, 922, 985, 1126, 1313
BciT130I CCWGG 1 cut(s) 1074
BciVI GTATCC 1 cut(s) 1297
BclI TGATCA 1 cut(s) 642
BcnI CCSGG 2 cut(s) 1064, 1065
BcoDI GTCTC 3 cut(s) 737, 798, 1436
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 2 cut(s) 27, 1403
BfuAI ACCTGC 1 cut(s) 668
BfuI GTATCC 1 cut(s) 1297
BisI GCNGC 1 cut(s) 907
BlsI GCNGC 1 cut(s) 908
Bme1390I CCNGG 3 cut(s) 1064, 1065, 1074
BmeT110I CYCGRG 1 cut(s) 1063
BmgT120I GGNCC 2 cut(s) 931, 1476
BmiI GGNNCC 4 cut(s) 938, 1115, 1170, 1324
BmrFI CCNGG 3 cut(s) 1064, 1065, 1074
BmrI ACTGGG 1 cut(s) 1237
BmsI GCATC 5 cut(s) 163, 499, 583, 617, 1303
BmuI ACTGGG 1 cut(s) 1237
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 2 cut(s) 598, 1456
BpuMI CCSGG 2 cut(s) 1064, 1065
BsaBI GATNNNNATC 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 746
BsaJI CCNNGG 3 cut(s) 1063, 1073, 1117
Bsc4I CCNNNNNNNGG 3 cut(s) 1102, 1373, 1473
Bse118I RCCGGY 1 cut(s) 933
Bse1I ACTGG 2 cut(s) 1232, 1312
Bse3DI GCAATG 1 cut(s) 190
Bse8I GATNNNNATC 1 cut(s) 419
BseBI CCWGG 1 cut(s) 1074
BseDI CCNNGG 3 cut(s) 1063, 1073, 1117
BseGI GGATG 2 cut(s) 289, 1263
BseJI GATNNNNATC 1 cut(s) 419
BseLI CCNNNNNNNGG 3 cut(s) 1102, 1373, 1473
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 3 cut(s) 503, 611, 1206
BseNI ACTGG 2 cut(s) 1232, 1312
BseRI GAGGAG 5 cut(s) 449, 972, 1151, 1456, 1459
BseXI GCAGC 1 cut(s) 918
BseYI CCCAGC 1 cut(s) 794
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 4 cut(s) 550, 621, 933, 1477
BshNI GGYRCC 1 cut(s) 936
BsiHKAI GWGCWC 1 cut(s) 685
BsiHKCI CYCGRG 1 cut(s) 1063
BsiSI CCGG 2 cut(s) 934, 1064
BslFI GGGAC 4 cut(s) 2, 1029, 1080, 1238
BslI CCNNNNNNNGG 3 cut(s) 1102, 1373, 1473
BsmAI GTCTC 3 cut(s) 737, 798, 1436
BsmBI CGTCTC 1 cut(s) 737
BsmFI GGGAC 4 cut(s) 2, 1029, 1080, 1238
BsmI GAATGC 1 cut(s) 472
BsnI GGCC 4 cut(s) 550, 621, 933, 1477
BsoBI CYCGRG 1 cut(s) 1063
Bsp1286I GDGCHC 1 cut(s) 685
Bsp143I GATC 7 cut(s) 10, 138, 202, 414, 642, 1059, 1113
Bsp19I CCATGG 1 cut(s) 1117
BspACI CCGC 1 cut(s) 45
BspANI GGCC 4 cut(s) 550, 621, 933, 1477
BspCNI CTCAG 3 cut(s) 502, 610, 1207
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 4 cut(s) 938, 1115, 1170, 1324
BspMI ACCTGC 1 cut(s) 668
BspPI GGATC 3 cut(s) 1054, 1108, 1121
BspQI GCTCTTC 1 cut(s) 690
BspT107I GGYRCC 1 cut(s) 936
BsrDI GCAATG 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 933
BsrI ACTGG 2 cut(s) 1232, 1312
BssAI RCCGGY 1 cut(s) 933
BssECI CCNNGG 3 cut(s) 1063, 1073, 1117
BssMI GATC 7 cut(s) 10, 138, 202, 414, 642, 1059, 1113
BssNI GRCGYC 1 cut(s) 746
BssT1I CCWWGG 1 cut(s) 1117
Bst2UI CCWGG 1 cut(s) 1074
Bst4CI ACNGT 2 cut(s) 446, 1371
Bst6I CTCTTC 2 cut(s) 640, 690
BstACI GRCGYC 1 cut(s) 746
BstAPI GCANNNNNTGC 1 cut(s) 1096
BstC8I GCNNGC 5 cut(s) 43, 904, 935, 1097, 1108
BstDEI CTNAG 4 cut(s) 393, 489, 597, 1215
BstDSI CCRYGG 1 cut(s) 1117
BstENI CCTNNNNNAGG 1 cut(s) 1471
BstF5I GGATG 2 cut(s) 289, 1263
BstKTI GATC 7 cut(s) 13, 141, 205, 417, 645, 1062, 1116
BstMAI GTCTC 3 cut(s) 737, 798, 1436
BstMBI GATC 7 cut(s) 10, 138, 202, 414, 642, 1059, 1113
BstMWI GCNNNNNNNGC 4 cut(s) 38, 627, 773, 1096
BstNI CCWGG 1 cut(s) 1074
BstNSI RCATGY 3 cut(s) 906, 1012, 1438
BstSCI CCNGG 3 cut(s) 1062, 1063, 1072
BstV1I GCAGC 1 cut(s) 918
BstX2I RGATCY 2 cut(s) 1059, 1113
BstYI RGATCY 2 cut(s) 1059, 1113
BsuI GTATCC 1 cut(s) 1297
BsuRI GGCC 4 cut(s) 550, 621, 933, 1477
BtgI CCRYGG 1 cut(s) 1117
BtgZI GCGATG 1 cut(s) 1326
BtsCI GGATG 2 cut(s) 289, 1263
BtsIMutI CAGTG 2 cut(s) 745, 1451
BveI ACCTGC 1 cut(s) 668
Cac8I GCNNGC 5 cut(s) 43, 904, 935, 1097, 1108
CciI TCATGA 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 933
Cfr13I GGNCC 2 cut(s) 931, 1476
Cfr9I CCCGGG 1 cut(s) 1063
CseI GACGC 1 cut(s) 754
CspCI CAANNNNNGTGG 2 cut(s) 984, 1019
DdeI CTNAG 4 cut(s) 393, 489, 597, 1215
DpnI GATC 7 cut(s) 12, 140, 204, 416, 644, 1061, 1115
DpnII GATC 7 cut(s) 10, 138, 202, 414, 642, 1059, 1113
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 2 cut(s) 640, 690
EarI CTCTTC 2 cut(s) 640, 690
Eco130I CCWWGG 1 cut(s) 1117
Eco88I CYCGRG 1 cut(s) 1063
EcoNI CCTNNNNNAGG 1 cut(s) 1471
EcoO109I RGGNCCY 1 cut(s) 1476
EcoRII CCWGG 1 cut(s) 1072
EcoT14I CCWWGG 1 cut(s) 1117
ErhI CCWWGG 1 cut(s) 1117
Esp3I CGTCTC 1 cut(s) 737
FaqI GGGAC 4 cut(s) 2, 1029, 1080, 1238
FauNDI CATATG 1 cut(s) 790
FbaI TGATCA 1 cut(s) 642
Fnu4HI GCNGC 1 cut(s) 907
FokI GGATG 2 cut(s) 296, 1270
Fsp4HI GCNGC 1 cut(s) 907
FspBI CTAG 2 cut(s) 27, 1403
GluI GCNGC 1 cut(s) 907
GsaI CCCAGC 1 cut(s) 798
HaeIII GGCC 4 cut(s) 550, 621, 933, 1477
HapII CCGG 2 cut(s) 934, 1064
HgaI GACGC 1 cut(s) 754
Hin1I GRCGYC 1 cut(s) 746
HinfI GANTC 9 cut(s) 367, 401, 542, 722, 812, 863, 1054, 1178, 1463
HpaII CCGG 2 cut(s) 934, 1064
HphI GGTGA 4 cut(s) 602, 829, 967, 1364
Hpy166II GTNNAC 1 cut(s) 1006
Hpy188I TCNGA 3 cut(s) 492, 612, 1059
Hpy188III TCNNGA 7 cut(s) 50, 102, 142, 506, 577, 599, 689
Hpy8I GTNNAC 1 cut(s) 1006
HpyAV CCTTC 2 cut(s) 350, 842
HpyCH4III ACNGT 2 cut(s) 446, 1371
HpyCH4IV ACGT 2 cut(s) 210, 461
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 627, 773, 1096
HpyF3I CTNAG 4 cut(s) 393, 489, 597, 1215
HpySE526I ACGT 2 cut(s) 210, 461
Hsp92I GRCGYC 1 cut(s) 746
KroI GCCGGC 1 cut(s) 933
KroNI GCCGGC 1 cut(s) 935
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 7 cut(s) 10, 138, 202, 414, 642, 1059, 1113
LguI GCTCTTC 1 cut(s) 690
Lsp1109I GCAGC 1 cut(s) 918
LweI GCATC 5 cut(s) 163, 499, 583, 617, 1303
MaeI CTAG 2 cut(s) 27, 1403
MaeII ACGT 2 cut(s) 210, 461
MaeIII GTNAC 3 cut(s) 304, 658, 868
MalI GATC 7 cut(s) 12, 140, 204, 416, 644, 1061, 1115
MboI GATC 7 cut(s) 10, 138, 202, 414, 642, 1059, 1113
MboII GAAGA 6 cut(s) 182, 257, 260, 424, 627, 677
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 2 cut(s) 1059, 1113
MhlI GDGCHC 1 cut(s) 685
MlsI TGGCCA 1 cut(s) 621
MluNI TGGCCA 1 cut(s) 621
MlyI GAGTC 6 cut(s) 410, 551, 731, 806, 1063, 1457
MmeI TCCRAC 2 cut(s) 295, 1227
Mox20I TGGCCA 1 cut(s) 621
MroNI GCCGGC 1 cut(s) 933
MroXI GAANNNNTTC 1 cut(s) 366
MscI TGGCCA 1 cut(s) 621
MseI TTAA 2 cut(s) 96, 440
MslI CAYNNNNRTG 1 cut(s) 1122
Msp20I TGGCCA 1 cut(s) 621
MspI CCGG 2 cut(s) 934, 1064
MspR9I CCNGG 3 cut(s) 1064, 1065, 1074
MunI CAATTG 1 cut(s) 585
Mva1269I GAATGC 1 cut(s) 472
MvaI CCWGG 1 cut(s) 1074
MwoI GCNNNNNNNGC 4 cut(s) 38, 627, 773, 1096
NaeI GCCGGC 1 cut(s) 935
NciI CCSGG 2 cut(s) 1064, 1065
NcoI CCATGG 1 cut(s) 1117
NdeI CATATG 1 cut(s) 790
NdeII GATC 7 cut(s) 10, 138, 202, 414, 642, 1059, 1113
NgoMIV GCCGGC 1 cut(s) 933
NlaIV GGNNCC 4 cut(s) 938, 1115, 1170, 1324
NmuCI GTSAC 2 cut(s) 658, 868
NspI RCATGY 3 cut(s) 906, 1012, 1438
PaeI GCATGC 1 cut(s) 906
PagI TCATGA 1 cut(s) 49
PaqCI CACCTGC 1 cut(s) 668
PciI ACATGT 2 cut(s) 1008, 1434
PciSI GCTCTTC 1 cut(s) 690
PctI GAATGC 1 cut(s) 472
PdiI GCCGGC 1 cut(s) 935
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 3 cut(s) 367, 863, 1178
PflMI CCANNNNNTGG 1 cut(s) 1373
PkrI GCNGC 1 cut(s) 908
PleI GAGTC 6 cut(s) 409, 550, 730, 806, 1062, 1457
PpsI GAGTC 6 cut(s) 409, 550, 730, 806, 1062, 1457
PscI ACATGT 2 cut(s) 1008, 1434
Psp6I CCWGG 1 cut(s) 1072
PspFI CCCAGC 1 cut(s) 794
PspGI CCWGG 1 cut(s) 1072
PspN4I GGNNCC 4 cut(s) 938, 1115, 1170, 1324
PspPI GGNCC 2 cut(s) 931, 1476
PsuI RGATCY 2 cut(s) 1059, 1113
RseI CAYNNNNRTG 1 cut(s) 1122
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 2 cut(s) 96, 440
SatI GCNGC 1 cut(s) 907
Sau3AI GATC 7 cut(s) 10, 138, 202, 414, 642, 1059, 1113
Sau96I GGNCC 2 cut(s) 931, 1476
SchI GAGTC 6 cut(s) 410, 551, 731, 806, 1063, 1457
ScrFI CCNGG 3 cut(s) 1064, 1065, 1074
SduI GDGCHC 1 cut(s) 685
SetI ASST 9 cut(s) 43, 165, 213, 464, 500, 682, 942, 1186, 1354
SfaNI GCATC 5 cut(s) 163, 499, 583, 617, 1303
SmaI CCCGGG 1 cut(s) 1065
SmiMI CAYNNNNRTG 1 cut(s) 1122
SmlI CTYRAG 2 cut(s) 577, 1471
SmoI CTYRAG 2 cut(s) 577, 1471
SpeI ACTAGT 1 cut(s) 26
SphI GCATGC 1 cut(s) 906
SsiI CCGC 1 cut(s) 45
SspMI CTAG 2 cut(s) 27, 1403
StyD4I CCNGG 3 cut(s) 1062, 1063, 1072
StyI CCWWGG 1 cut(s) 1117
TaaI ACNGT 2 cut(s) 446, 1371
TaiI ACGT 2 cut(s) 213, 464
TaqI TCGA 2 cut(s) 143, 545
TaqII GACCGA 1 cut(s) 856
TfiI GAWTC 3 cut(s) 367, 863, 1178
Tru1I TTAA 2 cut(s) 96, 440
Tru9I TTAA 2 cut(s) 96, 440
TscAI CASTG 2 cut(s) 745, 1458
TseFI GTSAC 2 cut(s) 658, 868
TseI GCWGC 1 cut(s) 906
Tsp45I GTSAC 2 cut(s) 658, 868
TspDTI ATGAA 7 cut(s) 66, 71, 179, 212, 359, 1335, 1430
TspMI CCCGGG 1 cut(s) 1063
TspRI CASTG 2 cut(s) 745, 1458
Van91I CCANNNNNTGG 1 cut(s) 1373
XagI CCTNNNNNAGG 1 cut(s) 1471
XapI RAATTY 3 cut(s) 58, 614, 1419
XceI RCATGY 3 cut(s) 906, 1012, 1438
XcmI CCANNNNNNNNNTGG 1 cut(s) 1370
XmaI CCCGGG 1 cut(s) 1063
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 2 cut(s) 27, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.