Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003910

Physical Location & Seq

Genomic Coordinates Forward (+)

2888587 .. 2889995

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCACAGGAACCTTTCAGCTACGGCCCTCGAAATATTTAGTAAACAAATTCAACTATGTTCGTCTCCTCGGAACATTGATGAAGTTACCCTCACCCTTGCTGCCAAGGCTTGCCCAGAAGACCCGAAACCCGGATGCCAAATCCACGGGTTTGCAGTTTCTTCTGGGTTTATTTCCTATGTTACAGTTTCGAATTCGTTGATGAGTATGTACACGAAAGCTGGGAGGTTTGATAGTGCAATGTGCATTTTTGATGGTATGTGTTATACTGATATAGTTTCTTGGAATACTATTCTTTCGGGGTTTCAAACGAGTGAGGGGGCGTTGAGTTTTGCTCTCAGGATGCATTCAAATGGGATAGGTTTGGATCCGGTGACTTGTACGGTTCTTGCTTTTTGTGCGGAGTATGAAGATTTTCTGTTTGGGTTACAATTGCATTCTCTCATACTTAAGTCTGGGTTGGATCGTGAAGTTTTTGTTGGGAATGCGCTTATAAGTATGTATTCAAGGTGGAGACGTTTGATTGAAGCTAGGAATGTGGTTGATGAAATGCGGATTAAGGATGTGGTTTCTTGGAATGCAATACTATCAGCTCCAACCCATCTTGATGTGAGGTGTCTTCGACTCTCCGGTCTTTCAAGCCCCACCCAGTCCCCACCGCCGAGCTTCTTGCCCAGCAACCTGCAACTAGCAAACCCATCTCCGGTCTCTGATCTCCGCCTCCAGCCCTCCAAGTATCTCTCTCCCCCTCTGACCTCTCCGTCTTTTTCTCCTCCTCGAGTGGTTCATGGTTGTCTTTGCAAGTTTGCATTGAATGAAGAGGACAGAGGCCGGAGGCAGATTGCGGACATGGTCGGAGTGTCGGACAAGGGCGGACAATGCCGCGGACTCGAGGAGAAGTCAACGACTGAACTGAGTCAACTGACTGAAGTTTTGATCTTGATTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

317

Amino Acids

34.69

Weight (kDa)

6.31

Isoelectric Point (pI)

61.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32430 AT4G32430
fragaria_vesca	FvH4_1g03430
malus_domestica	MD15G1174400.v1.1
prunus_persica	Prupe.5G003100_v2.0.a1 Prupe.7G240400_v2.0.a1 Prupe.7G241500_v2.0.a1 Prupe.7G241700_v2.0.a1 Prupe.8G249000_v2.0.a1
pyrus_communis	pycom15g15600
rosa_chinensis	RchiOBHm_Chr2g0088661 RchiOBHm_Chr5g0002171
rosa_laevigata	RLG00000015973 RLG00000015974 RLG00000031004
rosa_multiflora	Rmu_sc0006835.1_g000012 Rmu_sc0006835.1_g000013 Rmu_sc0013155.1_g000001 Rmu_sc0015442.1_g000012 Rmu_sc0015442.1_g000013 Rmu_sc0024326.1_g000001 Rmu_sc0041985.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152420
rosa_rugosa	Rorug01G0485700
rosa_samantha	Rh2AG041200 Rh2BG039900 Rh2CG040700 Rh2DG040300 Rh5AG016800 Rh5AG016900 Rh5CG018300 Rh5CG018400 Rh5CG018500
rosa_wichuraiana	Rw2G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AasI	GACNNNNNNGTC	2 cut(s)	630, 760
Acc36I	ACCTGC	1 cut(s)	690
AccII	CGCG	1 cut(s)	885
AciI	CCGC	8 cut(s)	401, 553, 659, 718, 845, 873, 883, 885
AclWI	GGATC	3 cut(s)	362, 375, 471
AcsI	RAATTY	2 cut(s)	48, 193
AcuI	CTGAAG	1 cut(s)	948
AfaI	GTAC	2 cut(s)	212, 382
AfiI	CCNNNNNNNGG	2 cut(s)	131, 703
AflII	CTTAAG	1 cut(s)	449
AgsI	TTSAA	7 cut(s)	53, 308, 351, 507, 527, 639, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	5 cut(s)	20, 221, 530, 593, 666
AluI	AGCT	5 cut(s)	20, 221, 530, 593, 666
Alw26I	GTCTC	3 cut(s)	69, 508, 712
AlwI	GGATC	3 cut(s)	362, 375, 471
Ama87I	CYCGRG	2 cut(s)	777, 890
AoxI	GGCC	2 cut(s)	24, 829
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	48, 193
ArsI	GACNNNNNNTTYG	2 cut(s)	916, 948
Asp700I	GAANNNNTTC	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	85, 385
AsuII	TTCGAA	1 cut(s)	191
AvaI	CYCGRG	2 cut(s)	777, 890
BamHI	GGATCC	1 cut(s)	367
BbsI	GAAGAC	2 cut(s)	126, 611
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	3 cut(s)	248, 609, 706
BceAI	ACGGC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	652, 686
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	3 cut(s)	69, 508, 712
BfaI	CTAG	2 cut(s)	531, 689
BfrI	CTTAAG	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	690
BisI	GCNGC	2 cut(s)	102, 883
BlsI	GCNGC	2 cut(s)	103, 884
Bme1390I	CCNGG	1 cut(s)	132
BmeT110I	CYCGRG	2 cut(s)	777, 890
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	11, 369
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	643
BmsI	GCATC	2 cut(s)	125, 333
BmuI	ACTGGG	1 cut(s)	643
BpiI	GAAGAC	2 cut(s)	126, 611
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpmI	CTGGAG	1 cut(s)	707
Bpu14I	TTCGAA	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	712
BsaJI	CCNNGG	4 cut(s)	68, 105, 145, 883
BsaWI	WCCGGW	3 cut(s)	370, 629, 703
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 703
Bse1I	ACTGG	1 cut(s)	649
Bse3DI	GCAATG	1 cut(s)	246
BseDI	CCNNGG	4 cut(s)	68, 105, 145, 883
BseGI	GGATG	3 cut(s)	140, 348, 568
BseLI	CCNNNNNNNGG	2 cut(s)	131, 703
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	352, 905
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	4 cut(s)	57, 762, 765, 908
BseXI	GCAGC	1 cut(s)	88
BseYI	CCCAGC	2 cut(s)	221, 674
Bsh1236I	CGCG	1 cut(s)	885
BshFI	GGCC	2 cut(s)	26, 831
BsiHKCI	CYCGRG	2 cut(s)	777, 890
BsiSI	CCGG	5 cut(s)	132, 371, 630, 704, 832
BslFI	GGGAC	1 cut(s)	637
BslI	CCNNNNNNNGG	2 cut(s)	131, 703
BsmAI	GTCTC	3 cut(s)	69, 508, 712
BsmBI	CGTCTC	2 cut(s)	69, 508
BsmFI	GGGAC	1 cut(s)	637
BsmI	GAATGC	4 cut(s)	346, 436, 490, 583
BsnI	GGCC	2 cut(s)	26, 831
Bso31I	GGTCTC	1 cut(s)	712
BsoBI	CYCGRG	2 cut(s)	777, 890
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	367, 463, 712, 936
BspACI	CCGC	8 cut(s)	401, 553, 659, 718, 845, 873, 883, 885
BspANI	GGCC	2 cut(s)	26, 831
BspCNI	CTCAG	2 cut(s)	351, 906
BspFNI	CGCG	1 cut(s)	885
BspLI	GGNNCC	2 cut(s)	11, 369
BspMI	ACCTGC	1 cut(s)	690
BspPI	GGATC	3 cut(s)	362, 375, 471
BspT104I	TTCGAA	1 cut(s)	191
BspTI	CTTAAG	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	712
BsrDI	GCAATG	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	4 cut(s)	68, 105, 145, 883
BssMI	GATC	4 cut(s)	367, 463, 712, 936
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	187, 385
Bst6I	CTCTTC	1 cut(s)	813
BstAFI	CTTAAG	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	338, 914
BstDSI	CCRYGG	2 cut(s)	145, 883
BstF5I	GGATG	3 cut(s)	140, 348, 568
BstFNI	CGCG	1 cut(s)	885
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	4 cut(s)	370, 466, 715, 939
BstMAI	GTCTC	3 cut(s)	69, 508, 712
BstMBI	GATC	4 cut(s)	367, 463, 712, 936
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 398, 879
BstSCI	CCNGG	1 cut(s)	130
BstUI	CGCG	1 cut(s)	885
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	2 cut(s)	126, 611
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	26, 831
BtgI	CCRYGG	2 cut(s)	145, 883
BtsCI	GGATG	3 cut(s)	140, 348, 568
BveI	ACCTGC	1 cut(s)	690
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	25
Cfr42I	CCGCGG	1 cut(s)	886
Csp6I	GTAC	2 cut(s)	211, 381
CviAII	CATG	2 cut(s)	788, 850
CviQI	GTAC	2 cut(s)	211, 381
DdeI	CTNAG	2 cut(s)	338, 914
DpnI	GATC	4 cut(s)	369, 465, 714, 938
DpnII	GATC	4 cut(s)	367, 463, 712, 936
DrdI	GACNNNNNNGTC	2 cut(s)	630, 760
DseDI	GACNNNNNNGTC	2 cut(s)	630, 760
Eam1104I	CTCTTC	1 cut(s)	813
EarI	CTCTTC	1 cut(s)	813
EciI	GGCGGA	2 cut(s)	707, 888
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	948
Eco88I	CYCGRG	2 cut(s)	777, 890
EcoRI	GAATTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	2 cut(s)	69, 508
FaeI	CATG	2 cut(s)	791, 853
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	2 cut(s)	787, 849
Fnu4HI	GCNGC	2 cut(s)	102, 883
FokI	GGATG	3 cut(s)	147, 355, 575
Fsp4HI	GCNGC	2 cut(s)	102, 883
FspBI	CTAG	2 cut(s)	531, 689
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	2 cut(s)	102, 883
GsaI	CCCAGC	2 cut(s)	225, 678
GsuI	CTGGAG	1 cut(s)	707
HaeIII	GGCC	2 cut(s)	26, 831
HapII	CCGG	5 cut(s)	132, 371, 630, 704, 832
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	2 cut(s)	791, 853
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	2 cut(s)	903, 920
HindII	GTYRAC	2 cut(s)	903, 920
HinfI	GANTC	3 cut(s)	624, 888, 916
HpaII	CCGG	5 cut(s)	132, 371, 630, 704, 832
HphI	GGTGA	2 cut(s)	85, 385
Hpy166II	GTNNAC	4 cut(s)	44, 213, 903, 920
Hpy188I	TCNGA	5 cut(s)	72, 712, 753, 857, 865
Hpy188III	TCNNGA	4 cut(s)	340, 467, 605, 940
Hpy8I	GTNNAC	4 cut(s)	44, 213, 903, 920
HpyCH4III	ACNGT	2 cut(s)	187, 385
HpyCH4IV	ACGT	1 cut(s)	517
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 398, 879
HpyF3I	CTNAG	2 cut(s)	338, 914
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	2 cut(s)	791, 853
HspAI	GCGC	1 cut(s)	488
KspI	CCGCGG	1 cut(s)	886
Kzo9I	GATC	4 cut(s)	367, 463, 712, 936
LmnI	GCTCC	1 cut(s)	598
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	2 cut(s)	125, 333
MaeI	CTAG	2 cut(s)	531, 689
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	4 cut(s)	85, 181, 373, 426
MalI	GATC	4 cut(s)	369, 465, 714, 938
MboI	GATC	4 cut(s)	367, 463, 712, 936
MboII	GAAGA	5 cut(s)	131, 153, 422, 611, 830
MfeI	CAATTG	1 cut(s)	431
MflI	RGATCY	1 cut(s)	367
MluCI	AATT	3 cut(s)	48, 193, 431
MlyI	GAGTC	3 cut(s)	618, 882, 925
MmeI	TCCRAC	4 cut(s)	441, 620, 835, 843
Mph1103I	ATGCAT	1 cut(s)	348
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	2 cut(s)	450, 558
MslI	CAYNNNNRTG	2 cut(s)	351, 606
MspA1I	CMGCKG	1 cut(s)	885
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	5 cut(s)	132, 371, 630, 704, 832
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	431
Mva1269I	GAATGC	4 cut(s)	346, 436, 490, 583
MvnI	CGCG	1 cut(s)	885
MwoI	GCNNNNNNNGC	3 cut(s)	107, 398, 879
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	4 cut(s)	367, 463, 712, 936
NlaIII	CATG	2 cut(s)	791, 853
NlaIV	GGNNCC	2 cut(s)	11, 369
NmeAIII	GCCGAG	1 cut(s)	687
NmuCI	GTSAC	1 cut(s)	373
NsiI	ATGCAT	1 cut(s)	348
NspV	TTCGAA	1 cut(s)	191
PaeR7I	CTCGAG	2 cut(s)	777, 890
PctI	GAATGC	4 cut(s)	346, 436, 490, 583
PdmI	GAANNNNTTC	1 cut(s)	414
PflFI	GACNNNGTC	1 cut(s)	851
PkrI	GCNGC	2 cut(s)	103, 884
PleI	GAGTC	3 cut(s)	618, 882, 924
PpsI	GAGTC	3 cut(s)	618, 882, 924
PsiI	TTATAA	1 cut(s)	494
PspFI	CCCAGC	2 cut(s)	221, 674
PspN4I	GGNNCC	2 cut(s)	11, 369
PspPI	GGNCC	1 cut(s)	25
PspXI	VCTCGAGB	2 cut(s)	777, 890
PsuI	RGATCY	1 cut(s)	367
PsyI	GACNNNGTC	1 cut(s)	851
RsaI	GTAC	2 cut(s)	212, 382
RsaNI	GTAC	2 cut(s)	211, 381
RseI	CAYNNNNRTG	2 cut(s)	351, 606
SacII	CCGCGG	1 cut(s)	886
SaqAI	TTAA	2 cut(s)	450, 558
SatI	GCNGC	2 cut(s)	102, 883
Sau3AI	GATC	4 cut(s)	367, 463, 712, 936
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	3 cut(s)	618, 882, 925
ScrFI	CCNGG	1 cut(s)	132
SfaNI	GCATC	2 cut(s)	125, 333
Sfr274I	CTCGAG	2 cut(s)	777, 890
Sfr303I	CCGCGG	1 cut(s)	886
SfuI	TTCGAA	1 cut(s)	191
SgrBI	CCGCGG	1 cut(s)	886
SlaI	CTCGAG	2 cut(s)	777, 890
SmiMI	CAYNNNNRTG	2 cut(s)	351, 606
SmlI	CTYRAG	3 cut(s)	449, 777, 890
SmoI	CTYRAG	3 cut(s)	449, 777, 890
Sse9I	AATT	3 cut(s)	48, 193, 431
SsiI	CCGC	8 cut(s)	401, 553, 659, 718, 845, 873, 883, 885
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	2 cut(s)	531, 689
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	187, 385
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	5 cut(s)	30, 191, 622, 778, 891
TasI	AATT	3 cut(s)	48, 193, 431
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	1 cut(s)	885
Tru1I	TTAA	2 cut(s)	450, 558
Tru9I	TTAA	2 cut(s)	450, 558
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	5 cut(s)	96, 423, 561, 776, 831
TspGWI	ACGGA	1 cut(s)	750
Tth111I	GACNNNGTC	1 cut(s)	851
Vha464I	CTTAAG	1 cut(s)	449
XapI	RAATTY	2 cut(s)	48, 193
XhoI	CTCGAG	2 cut(s)	777, 890
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	2 cut(s)	531, 689
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.