Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013155.1

Orthogroup ID

OG0003910

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1692

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013155.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1457 bp

gacgtttgatagaagctaggaatgtgtttgatgaaatgcggattaaggatgtggtttcttggaatgcaatactatcaggttactctcaagagggaaatcatgggcttgaagcagttttactcttcattgaaatggtgagaaaagggatgaaacttgatcatgtctcatttactagcgcagtttcagcttgcgggcatgagaagaatttaagacttgggagacagatacatggcttgacagtaaaatcagggaagttggtggaagaaggccttatgattcatgggttttgcacaaagactggatttttgtcaaagcataatgtttgcaatagctttatcaccatgtatgctaagtttgagtccatggatgattctgtcaaggtttttgaggagttggacttcagagaaatcatttcatggaatgctttgatctcagggtatgctcagaatgggctgtgtcaggatgcactgaagacattcttgtctgcaatcatggagtccacgcctaacaactacacatttggtagtgtcttgagtgcaattggtgatgctcatgacatttctctgaagtatggccagcgatgcctctccttttttataaaacttggatcagtcactgactcgattacagcaggtgctctccttgatatgtatgcaaagcgaggaagcatttgcgagtcccaaagagttttcagtgagacccctcacagaactcagtttgcttggacagcaataatatctgcatatgctgggcatggagactatgactcagtaatcgaattgttctaccagatggataaagaaggggtaaaacctgactcgatcacatttctttctgtactaagcgcatgtagcagaaagggatcagttgagatgggccaccatttctttgaatcaatggtcaaagactatcagattgaatcatctcctcaacattatgcttgtatggtggacatgttaggccgggcaggaaagctggaggaaccagaggaattgacgagtcagatgtcaggacagccgagtttttctttgttgcaaagcttgcttggggcttgcacgatacatgggaatgtggagatggctgagagagttgcagatgctttaatgcgaatggagccaactgaatcaggttcctatgtgctgttgtccaacttgtatgcagagaaaggggactgggaaatggtggcaaaaacaaggaaacagatgagagttaggggagtgagaaaggaagtgggatttagctggttggataatggtgatgctgatggttctttgtatctccacgggttttcgtcaggtgatacctctcaccgccagtctgaagagataagtagaatggcgaaatgcataggactagaaatgaagtttttgagagagaacatggctgagatagactcactgaaacaagacagtgagacacattctcaagtgcctcatgatgaagaaggcttgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

484

Amino Acids

54.04

Weight (kDa)

5.49

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32430 AT4G32430
fragaria_vesca	FvH4_1g03430
malus_domestica	MD15G1174400.v1.1
prunus_persica	Prupe.5G003100_v2.0.a1 Prupe.7G240400_v2.0.a1 Prupe.7G241500_v2.0.a1 Prupe.7G241700_v2.0.a1 Prupe.8G249000_v2.0.a1
pyrus_communis	pycom15g15600
rosa_chinensis	RchiOBHm_Chr2g0088661 RchiOBHm_Chr5g0002171
rosa_laevigata	RLG00000015973 RLG00000015974 RLG00000031004
rosa_multiflora	Rmu_sc0006835.1_g000012 Rmu_sc0006835.1_g000013 Rmu_sc0013155.1_g000001 Rmu_sc0015442.1_g000012 Rmu_sc0015442.1_g000013 Rmu_sc0024326.1_g000001 Rmu_sc0041985.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152420
rosa_rugosa	Rorug01G0485700
rosa_samantha	Rh2AG041200 Rh2BG039900 Rh2CG040700 Rh2DG040300 Rh5AG016800 Rh5AG016900 Rh5CG018300 Rh5CG018400 Rh5CG018500
rosa_wichuraiana	Rw2G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	598
AarI	CACCTGC	1 cut(s)	622
AasI	GACNNNNNNGTC	1 cut(s)	480
Acc36I	ACCTGC	1 cut(s)	622
AciI	CCGC	3 cut(s)	39, 191, 1311
AclWI	GGATC	2 cut(s)	615, 870
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	4 cut(s)	384, 490, 586, 1340
AfaI	GTAC	1 cut(s)	839
AflIII	ACRYGT	1 cut(s)	953
AgsI	TTSAA	4 cut(s)	109, 130, 892, 919
AluBI	AGCT	6 cut(s)	16, 187, 332, 975, 1040, 1241
AluI	AGCT	6 cut(s)	16, 187, 332, 975, 1040, 1241
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	5 cut(s)	168, 213, 691, 752, 1408
AlwI	GGATC	2 cut(s)	615, 870
AlwNI	CAGNNNCTG	1 cut(s)	616
AoxI	GGCC	4 cut(s)	267, 573, 876, 960
ApoI	RAATTY	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	288, 320
Asp700I	GAANNNNTTC	1 cut(s)	475
AspLEI	GCGC	2 cut(s)	178, 847
AspS9I	GGNCC	1 cut(s)	876
AsuC2I	CCSGG	1 cut(s)	964
AsuHPI	GGTGA	6 cut(s)	147, 330, 556, 1267, 1300, 1309
BalI	TGGCCA	1 cut(s)	575
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
BbsI	GAAGAC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	639
BccI	CCATC	4 cut(s)	786, 867, 1071, 1258
BclI	TGATCA	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	964
BcoDI	GTCTC	5 cut(s)	168, 213, 691, 752, 1408
BfaI	CTAG	3 cut(s)	17, 173, 1354
BfuAI	ACCTGC	1 cut(s)	622
Bme1390I	CCNGG	1 cut(s)	964
BmgT120I	GGNCC	1 cut(s)	876
BmiI	GGNNCC	3 cut(s)	983, 1115, 1131
BmrFI	CCNGG	1 cut(s)	964
BmrI	ACTGGG	1 cut(s)	1182
BmsI	GCATC	5 cut(s)	453, 537, 571, 1086, 1248
BmuI	ACTGGG	1 cut(s)	1182
BpiI	GAAGAC	1 cut(s)	478
BplI	GAGNNNNNCTC	2 cut(s)	1378, 1410
BpmI	CTGGAG	1 cut(s)	997
BpuEI	CTTGAG	3 cut(s)	71, 552, 1409
BpuMI	CCSGG	1 cut(s)	964
BsaI	GGTCTC	1 cut(s)	691
BsaJI	CCNNGG	2 cut(s)	362, 1281
Bse1I	ACTGG	3 cut(s)	303, 1177, 1314
BseDI	CCNNGG	2 cut(s)	362, 1281
BseGI	GGATG	4 cut(s)	54, 152, 372, 468
BseMII	CTCAG	6 cut(s)	446, 457, 727, 782, 1073, 1376
BseNI	ACTGG	3 cut(s)	303, 1177, 1314
BseRI	GAGGAG	2 cut(s)	403, 917
BseYI	CCCAGC	1 cut(s)	748
BshFI	GGCC	4 cut(s)	269, 575, 878, 962
BsiHKAI	GWGCWC	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	963
BslFI	GGGAC	2 cut(s)	663, 1183
BsmAI	GTCTC	5 cut(s)	168, 213, 691, 752, 1408
BsmFI	GGGAC	2 cut(s)	663, 1183
BsmI	GAATGC	2 cut(s)	69, 426
BsnI	GGCC	4 cut(s)	269, 575, 878, 962
Bso31I	GGTCTC	1 cut(s)	691
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp143I	GATC	5 cut(s)	156, 428, 607, 821, 862
Bsp19I	CCATGG	1 cut(s)	362
BspACI	CCGC	3 cut(s)	39, 191, 1311
BspANI	GGCC	4 cut(s)	269, 575, 878, 962
BspCNI	CTCAG	6 cut(s)	445, 456, 726, 781, 1074, 1377
BspHI	TCATGA	2 cut(s)	552, 1434
BspLI	GGNNCC	3 cut(s)	983, 1115, 1131
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	2 cut(s)	615, 870
BspTNI	GGTCTC	1 cut(s)	691
BsrI	ACTGG	3 cut(s)	303, 1177, 1314
BssECI	CCNNGG	2 cut(s)	362, 1281
BssMI	GATC	5 cut(s)	156, 428, 607, 821, 862
BssT1I	CCWWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	240, 1411
Bst6I	CTCTTC	2 cut(s)	127, 1316
BstAPI	GCANNNNNTGC	1 cut(s)	1041
BstC8I	GCNNGC	5 cut(s)	189, 193, 577, 1042, 1053
BstDEI	CTNAG	8 cut(s)	350, 432, 443, 713, 768, 841, 1082, 1385
BstDSI	CCRYGG	2 cut(s)	362, 1281
BstF5I	GGATG	4 cut(s)	54, 152, 372, 468
BstHHI	GCGC	2 cut(s)	178, 847
BstKTI	GATC	5 cut(s)	159, 431, 610, 824, 865
BstMAI	GTCTC	5 cut(s)	168, 213, 691, 752, 1408
BstMBI	GATC	5 cut(s)	156, 428, 607, 821, 862
BstMWI	GCNNNNNNNGC	6 cut(s)	184, 581, 727, 851, 1041, 1113
BstNSI	RCATGY	2 cut(s)	851, 957
BstSCI	CCNGG	1 cut(s)	962
BstV2I	GAAGAC	1 cut(s)	478
BsuRI	GGCC	4 cut(s)	269, 575, 878, 962
BtgI	CCRYGG	2 cut(s)	362, 1281
BtgZI	GCGATG	1 cut(s)	594
BtsCI	GGATG	4 cut(s)	54, 152, 372, 468
BtsIMutI	CAGTG	5 cut(s)	466, 614, 699, 1396, 1416
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	5 cut(s)	189, 193, 577, 1042, 1053
CaiI	CAGNNNCTG	1 cut(s)	616
CciI	TCATGA	2 cut(s)	552, 1434
CfoI	GCGC	2 cut(s)	178, 847
Cfr13I	GGNCC	1 cut(s)	876
Csp6I	GTAC	1 cut(s)	838
CviQI	GTAC	1 cut(s)	838
DdeI	CTNAG	8 cut(s)	350, 432, 443, 713, 768, 841, 1082, 1385
DpnI	GATC	5 cut(s)	158, 430, 609, 823, 864
DpnII	GATC	5 cut(s)	156, 428, 607, 821, 862
DrdI	GACNNNNNNGTC	1 cut(s)	480
DseDI	GACNNNNNNGTC	1 cut(s)	480
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	2 cut(s)	127, 1316
EarI	CTCTTC	2 cut(s)	127, 1316
Eco130I	CCWWGG	1 cut(s)	362
Eco147I	AGGCCT	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	691
Eco57I	CTGAAG	4 cut(s)	384, 490, 586, 1340
EcoT14I	CCWWGG	1 cut(s)	362
EcoT22I	ATGCAT	1 cut(s)	1348
ErhI	CCWWGG	1 cut(s)	362
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 463, 495
FaqI	GGGAC	2 cut(s)	663, 1183
FauI	CCCGC	1 cut(s)	184
FauNDI	CATATG	1 cut(s)	744
FbaI	TGATCA	1 cut(s)	156
FokI	GGATG	4 cut(s)	61, 159, 379, 475
FspBI	CTAG	3 cut(s)	17, 173, 1354
GlaI	GCGC	2 cut(s)	177, 846
GsaI	CCCAGC	1 cut(s)	752
GsuI	CTGGAG	1 cut(s)	997
HaeIII	GGCC	4 cut(s)	269, 575, 878, 962
HapII	CCGG	1 cut(s)	963
HhaI	GCGC	2 cut(s)	178, 847
Hin6I	GCGC	2 cut(s)	176, 845
HinP1I	GCGC	2 cut(s)	176, 845
HindIII	AAGCTT	1 cut(s)	1038
HpaII	CCGG	1 cut(s)	963
HphI	GGTGA	6 cut(s)	147, 330, 556, 1267, 1300, 1309
Hpy166II	GTNNAC	2 cut(s)	500, 951
Hpy188I	TCNGA	6 cut(s)	403, 446, 566, 914, 1004, 1320
Hpy188III	TCNNGA	6 cut(s)	88, 460, 531, 553, 1010, 1435
Hpy8I	GTNNAC	2 cut(s)	500, 951
HpyAV	CCTTC	3 cut(s)	259, 796, 1438
HpyCH4III	ACNGT	2 cut(s)	240, 1411
HpyCH4IV	ACGT	1 cut(s)	3
HpyF10VI	GCNNNNNNNGC	6 cut(s)	184, 581, 727, 851, 1041, 1113
HpyF3I	CTNAG	8 cut(s)	350, 432, 443, 713, 768, 841, 1082, 1385
HpySE526I	ACGT	1 cut(s)	3
HspAI	GCGC	2 cut(s)	176, 845
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	5 cut(s)	156, 428, 607, 821, 862
LmnI	GCTCC	1 cut(s)	1113
LweI	GCATC	5 cut(s)	453, 537, 571, 1086, 1248
MaeI	CTAG	3 cut(s)	17, 173, 1354
MaeII	ACGT	1 cut(s)	3
MaeIII	GTNAC	2 cut(s)	79, 612
MalI	GATC	5 cut(s)	158, 430, 609, 823, 864
MboI	GATC	5 cut(s)	156, 428, 607, 821, 862
MboII	GAAGA	6 cut(s)	114, 213, 274, 483, 1333, 1453
MfeI	CAATTG	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	639
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	4 cut(s)	204, 539, 778, 991
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	8 cut(s)	367, 505, 613, 685, 760, 811, 1008, 1387
MmeI	TCCRAC	3 cut(s)	374, 1172, 1226
Mox20I	TGGCCA	1 cut(s)	575
Mph1103I	ATGCAT	1 cut(s)	1348
MroXI	GAANNNNTTC	1 cut(s)	475
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	3 cut(s)	44, 208, 1102
MslI	CAYNNNNRTG	2 cut(s)	130, 1067
Msp20I	TGGCCA	1 cut(s)	575
MspI	CCGG	1 cut(s)	963
MspR9I	CCNGG	1 cut(s)	964
MunI	CAATTG	1 cut(s)	539
Mva1269I	GAATGC	2 cut(s)	69, 426
MwoI	GCNNNNNNNGC	6 cut(s)	184, 581, 727, 851, 1041, 1113
NciI	CCSGG	1 cut(s)	964
NcoI	CCATGG	1 cut(s)	362
NdeI	CATATG	1 cut(s)	744
NdeII	GATC	5 cut(s)	156, 428, 607, 821, 862
NlaIV	GGNNCC	3 cut(s)	983, 1115, 1131
NmeAIII	GCCGAG	1 cut(s)	1043
NmuCI	GTSAC	1 cut(s)	612
NsiI	ATGCAT	1 cut(s)	1348
NspI	RCATGY	2 cut(s)	851, 957
PagI	TCATGA	2 cut(s)	552, 1434
PaqCI	CACCTGC	1 cut(s)	622
PceI	AGGCCT	1 cut(s)	269
PciI	ACATGT	1 cut(s)	953
PctI	GAATGC	2 cut(s)	69, 426
PdmI	GAANNNNTTC	1 cut(s)	475
PfeI	GAWTC	5 cut(s)	276, 370, 892, 919, 1123
PleI	GAGTC	8 cut(s)	366, 504, 613, 684, 760, 811, 1007, 1387
PpsI	GAGTC	8 cut(s)	366, 504, 613, 684, 760, 811, 1007, 1387
PscI	ACATGT	1 cut(s)	953
PsiI	TTATAA	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	748
PspN4I	GGNNCC	3 cut(s)	983, 1115, 1131
PspPI	GGNCC	1 cut(s)	876
PstNI	CAGNNNCTG	1 cut(s)	616
RsaI	GTAC	1 cut(s)	839
RsaNI	GTAC	1 cut(s)	838
RseI	CAYNNNNRTG	2 cut(s)	130, 1067
SaqAI	TTAA	3 cut(s)	44, 208, 1102
Sau3AI	GATC	5 cut(s)	156, 428, 607, 821, 862
Sau96I	GGNCC	1 cut(s)	876
SchI	GAGTC	8 cut(s)	367, 505, 613, 685, 760, 811, 1008, 1387
ScrFI	CCNGG	1 cut(s)	964
SduI	GDGCHC	1 cut(s)	639
SfaNI	GCATC	5 cut(s)	453, 537, 571, 1086, 1248
SmiMI	CAYNNNNRTG	2 cut(s)	130, 1067
SmlI	CTYRAG	3 cut(s)	86, 531, 1424
SmoI	CTYRAG	3 cut(s)	86, 531, 1424
Sse9I	AATT	4 cut(s)	204, 539, 778, 991
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	3 cut(s)	39, 191, 1311
SspMI	CTAG	3 cut(s)	17, 173, 1354
StuI	AGGCCT	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	962
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	2 cut(s)	240, 1411
TaiI	ACGT	1 cut(s)	6
TaqI	TCGA	3 cut(s)	622, 776, 820
TasI	AATT	4 cut(s)	204, 539, 778, 991
TatI	WGTACW	1 cut(s)	837
TfiI	GAWTC	5 cut(s)	276, 370, 892, 919, 1123
Tru1I	TTAA	3 cut(s)	44, 208, 1102
Tru9I	TTAA	3 cut(s)	44, 208, 1102
TscAI	CASTG	5 cut(s)	473, 621, 699, 1403, 1416
TseFI	GTSAC	1 cut(s)	612
Tsp45I	GTSAC	1 cut(s)	612
TspDTI	ATGAA	7 cut(s)	47, 114, 163, 268, 404, 1375, 1454
TspRI	CASTG	5 cut(s)	473, 621, 699, 1403, 1416
XapI	RAATTY	1 cut(s)	204
XceI	RCATGY	2 cut(s)	851, 957
XmnI	GAANNNNTTC	1 cut(s)	475
XspI	CTAG	3 cut(s)	17, 173, 1354
Zsp2I	ATGCAT	1 cut(s)	1348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.