Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003910

Physical Location & Seq

Genomic Coordinates Forward (+)

2787823 .. 2790444

Gene Structure 2622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG039900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGATTGCCCGCCAACTGAATTTCAAAACCCTCCAACGAATACGCAAGCCACGACTTACAACTAGTACAAGCAACTCTAAATTCCATTCTTTGAAAGACGAACACCACCTGTTCGATGAAATTCCCCAACCAGATGCTGCCGCAGTTAACCGCTCTATGCTCAACTATATGCACAGGAACCTTTCAGCTACGGCCCTCGAAATATTTAGTAAACAAATTCAAGTATGTTCGTCTCCTCGGAACATTGATGAAGTTACCCTCACCCTTGCTGCCAAGGCTTGCCAAGGGGACCCGAAACCCGGATGCCAAATCCACGGTTTTGCGCTTTCGTCTGGGTTTATTTCCTATGTTACGGTTTCAAATTCCTTGATGAGTATGTACACTAAAGCTGGGAGGTTTGATAGTGCAATGTGTATTTTTGATAGTATGTGTTACACTGATATAGTTTCTTGGAATACTATTCTTTCGGGGTTTCGAACGAGTGAGGGGGCATTGAGTTTTGCTCTCAGGATGCATTCAAATGGGATTGCTTTGGATCCGGTGACTTATTGTACAGTTCTTGCTTTTTGTGCGGAGTATGAAGATTTTCTGTTTGGGTTACAATTGCATTCTCTCATACTTAGGTCTGGGTTGGATCGTGAAGTTTTTGTTGGGAATGCGCTTATAAGTATGTATTCAAGGTGGAGGCGTTTGATAGAAGCTAGGAATGTGTTTGATGAAATGGGGAATAAGGACGTGGTTTCTTGGAATGCAATACTATCAGGTTACTCTCAAGAGGGAAATCATGGGCTTGAAGCAGTTTTACTCTTCATTGAGATGGTGAGAGAAGGGATGAAACTTGATCATGTCTCATTTACTAGTGCAGTTTCAGCTTGCGGTCATGAGAAGAATTTAAGACTTGGGAGACAGATACACGGCTTGACGGTAAAATCAGGATATGAAAGCCATGTTTCAGTTGGCAATGTATTGATCTCAACATATTCAAAGAGTGGTGTCAATGAAGATGCGGGATTGGTGTTTCAGCTCATGAACAATCGCAATGTAATTTCCTGGACTACAATGATTTCTATGGACGAAGAGAATGCCATCTCTTTATTTAATGAGATGAGATTGGATGGAGTATATCCAAATGATGTTACATTTGTTGGACTAATCCATGCTATATCAACTAGGAAGTTGGTGGAAGAAGGCCTTATGATTCATGGGTTTTGCACCAAGACTGGATTTTTGTCAAAGCATAATGTTTGCAATAGCTTTATCACCATGTATGCTAAGTTTGAGTCCATGGATGATTCTGTCAAGGTTTTTGAGGAGTTGGACTTCAGAGAAATCATATCATGGAATGCTTTGATCTCAGGGTATGCTCAGAACAGGCTGTGTCAGGATGCACTGAAGACATTCTTGTCTGCAATCATGGAGTCCACGCCTAACAACTACACATTTGGTAGTGTCTTGAGTGCAATTGGTGATGCTCATGACATTTCTCTGAAGTATGGCCAGCGATGCCACTCCTTTTTGATAAAACTTGGTTCAGTCACTGACCCGATTACAGCAGGTGCTCTCCTTGATATGTATGCAAAGCGAGGAAGCATTTGCGAGTCCCAAAGGGTTTTCAGCGAGACCCCTCACAGAACTCAGTTCGCTTGGACAGCAATAATATCTGCATATGCTGGGCATGGAGACTATGACTCAGTAATTGAACTGTTCTACCAGATGGATAAAGAAGGGGTAAGACCTGATTCAATCACATTTCTTTCTGTGCTAAGTGCATGTAGCAGAAAGGGATCAGTTCAGATGGGCCGCCATTTCTTTGAATCAATGGTCAAAGACTATCAGATTGAACCATCTCCTCAACATTATGCTTGTATGGTGGACATGTTAGGCCGGGCAGGAAAGCTGGAGGAAGCAGAGGAATTGACGAGTCAGATGTCAGGACAGCCGAGTTTTTCTTTGTTGCAAAGCTTGCTTGGGGCTTGTACAATACATGGGAATGTGGAGATGGCTGAGAGAGTTGCAGATGCTTTATTGCGAATGGAGCCAACGGAATCAGGTTCCTATGTGCTGTTGTCCAACTTGTATGCAGAGAAAGGGGACTGGGAAATGGTGGCGAAAATAAGGAAACAGATGAGAGATAGGGGAGTGAGAAAGGAAGTGGGATTTAGTTGGTTGGATAATGGTGATGCTGATGGTTCTTTGTATCTCCACGGGTTTTCGTCAGGTGATACCTCTCACCGCCAGTCTGAAGAGATAAGTAGAATGGCGAAATGCATAGGACTAGAAATGAAGTTTTTGAGAGAGAACATGGCTGAGATAGGCTCACTGAAACAAGACAGTGAGACACATTCTCAAGTGCCTCATGATGAAGCCTTGTATTGTAACATTGACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

796

Amino Acids

88.94

Weight (kDa)

5.78

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	244 - 292	1.5e-08	PPR repeat family
PPR_2	PF13041	546 - 592	8.4e-10	PPR repeat family
E_motif	PF20431	662 - 723	1.4e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32430 AT4G32430
fragaria_vesca	FvH4_1g03430
malus_domestica	MD15G1174400.v1.1
prunus_persica	Prupe.5G003100_v2.0.a1 Prupe.7G240400_v2.0.a1 Prupe.7G241500_v2.0.a1 Prupe.7G241700_v2.0.a1 Prupe.8G249000_v2.0.a1
pyrus_communis	pycom15g15600
rosa_chinensis	RchiOBHm_Chr2g0088661 RchiOBHm_Chr5g0002171
rosa_laevigata	RLG00000015973 RLG00000015974 RLG00000031004
rosa_multiflora	Rmu_sc0006835.1_g000012 Rmu_sc0006835.1_g000013 Rmu_sc0013155.1_g000001 Rmu_sc0015442.1_g000012 Rmu_sc0015442.1_g000013 Rmu_sc0024326.1_g000001 Rmu_sc0041985.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152420
rosa_rugosa	Rorug01G0485700
rosa_samantha	Rh2AG041200 Rh2BG039900 Rh2CG040700 Rh2DG040300 Rh5AG016800 Rh5AG016900 Rh5CG018300 Rh5CG018400 Rh5CG018500
rosa_wichuraiana	Rw2G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	665
AarI	CACCTGC	1 cut(s)	1544
AasI	GACNNNNNNGTC	1 cut(s)	1402
Acc36I	ACCTGC	1 cut(s)	1544
AccBSI	CCGCTC	1 cut(s)	153
AciI	CCGC	8 cut(s)	10, 141, 151, 572, 876, 1007, 1801, 2233
AclWI	GGATC	4 cut(s)	530, 543, 642, 1792
AcoI	YGGCCR	1 cut(s)	1495
AcsI	RAATTY	6 cut(s)	19, 80, 120, 216, 361, 889
AcuI	CTGAAG	4 cut(s)	1306, 1412, 1508, 2262
AfaI	GTAC	4 cut(s)	67, 380, 553, 1978
AfiI	CCNNNNNNNGG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	1875
AhlI	ACTAGT	2 cut(s)	62, 857
AjiI	CACGTC	1 cut(s)	736
AjnI	CCWGG	1 cut(s)	1049
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AluBI	AGCT	8 cut(s)	188, 389, 701, 872, 1024, 1254, 1897, 1962
AluI	AGCT	8 cut(s)	188, 389, 701, 872, 1024, 1254, 1897, 1962
Alw21I	GWGCWC	1 cut(s)	1561
Alw26I	GTCTC	6 cut(s)	237, 853, 898, 1613, 1674, 2330
AlwI	GGATC	4 cut(s)	530, 543, 642, 1792
AlwNI	CAGNNNCTG	2 cut(s)	137, 1538
AoxI	GGCC	5 cut(s)	192, 1189, 1495, 1798, 1882
ApeKI	GCWGC	2 cut(s)	137, 269
ApoI	RAATTY	6 cut(s)	19, 80, 120, 216, 361, 889
ArsI	GACNNNNNNTTYG	2 cut(s)	1210, 1242
Asp700I	GAANNNNTTC	2 cut(s)	585, 1397
AspLEI	GCGC	2 cut(s)	325, 661
AspS9I	GGNCC	3 cut(s)	193, 289, 1798
AsuC2I	CCSGG	2 cut(s)	300, 1886
AsuHPI	GGTGA	8 cut(s)	253, 553, 832, 1252, 1478, 2189, 2222, 2231
AsuII	TTCGAA	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	1497
BamHI	GGATCC	1 cut(s)	535
BarI	GAAGNNNNNNTAC	2 cut(s)	786, 818
BbsI	GAAGAC	1 cut(s)	1400
Bbv12I	GWGCWC	1 cut(s)	1561
BbvI	GCAGC	2 cut(s)	124, 256
BccI	CCATC	8 cut(s)	811, 1094, 1109, 1708, 1789, 1852, 1993, 2180
BceAI	ACGGC	2 cut(s)	207, 931
BcgI	CGANNNNNNTGC	2 cut(s)	1064, 1098
BciT130I	CCWGG	1 cut(s)	1051
BclI	TGATCA	1 cut(s)	841
BcnI	CCSGG	2 cut(s)	300, 1886
BcoDI	GTCTC	6 cut(s)	237, 853, 898, 1613, 1674, 2330
BcuI	ACTAGT	2 cut(s)	62, 857
BfaI	CTAG	5 cut(s)	63, 702, 858, 1170, 2276
BfuAI	ACCTGC	1 cut(s)	1544
BisI	GCNGC	4 cut(s)	138, 141, 270, 1801
BlsI	GCNGC	4 cut(s)	139, 142, 271, 1802
Bme1390I	CCNGG	3 cut(s)	300, 1051, 1886
Bme18I	GGWCC	1 cut(s)	289
BmgBI	CACGTC	1 cut(s)	736
BmgT120I	GGNCC	3 cut(s)	193, 289, 1798
BmiI	GGNNCC	6 cut(s)	179, 290, 291, 537, 2037, 2053
BmrFI	CCNGG	3 cut(s)	300, 1051, 1886
BmrI	ACTGGG	1 cut(s)	2104
BmsI	GCATC	9 cut(s)	124, 293, 501, 994, 1375, 1459, 1493, 2008, 2170
BmuI	ACTGGG	1 cut(s)	2104
BpiI	GAAGAC	1 cut(s)	1400
BplI	GAGNNNNNCTC	4 cut(s)	487, 519, 2300, 2332
BpmI	CTGGAG	1 cut(s)	1919
Bpu14I	TTCGAA	1 cut(s)	475
BpuEI	CTTGAG	3 cut(s)	756, 1474, 2331
BpuMI	CCSGG	2 cut(s)	300, 1886
BsaI	GGTCTC	1 cut(s)	1613
BsaJI	CCNNGG	6 cut(s)	236, 273, 283, 313, 1284, 2203
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	3 cut(s)	1225, 2099, 2236
Bse3DI	GCAATG	3 cut(s)	414, 967, 1045
BseBI	CCWGG	1 cut(s)	1051
BseDI	CCNNGG	6 cut(s)	236, 273, 283, 313, 1284, 2203
BseGI	GGATG	6 cut(s)	308, 516, 837, 1120, 1294, 1390
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMI	GCAATG	3 cut(s)	414, 967, 1045
BseMII	CTCAG	7 cut(s)	520, 1368, 1379, 1649, 1704, 1995, 2298
BseNI	ACTGG	3 cut(s)	1225, 2099, 2236
BseRI	GAGGAG	3 cut(s)	225, 1325, 1839
BseXI	GCAGC	2 cut(s)	124, 256
BseYI	CCCAGC	2 cut(s)	389, 1670
BsgI	GTGCAG	1 cut(s)	882
BshFI	GGCC	5 cut(s)	194, 1191, 1497, 1800, 1884
BsiHKAI	GWGCWC	1 cut(s)	1561
BsiSI	CCGG	3 cut(s)	300, 539, 1885
BslFI	GGGAC	3 cut(s)	302, 1585, 2105
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	6 cut(s)	237, 853, 898, 1613, 1674, 2330
BsmBI	CGTCTC	1 cut(s)	237
BsmFI	GGGAC	3 cut(s)	302, 1585, 2105
BsmI	GAATGC	6 cut(s)	514, 607, 661, 754, 1087, 1348
BsnI	GGCC	5 cut(s)	194, 1191, 1497, 1800, 1884
Bso31I	GGTCTC	1 cut(s)	1613
Bsp119I	TTCGAA	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	1561
Bsp1407I	TGTACA	3 cut(s)	378, 551, 1976
Bsp143I	GATC	6 cut(s)	535, 634, 841, 969, 1350, 1784
Bsp19I	CCATGG	1 cut(s)	1284
BspACI	CCGC	8 cut(s)	10, 141, 151, 572, 876, 1007, 1801, 2233
BspANI	GGCC	5 cut(s)	194, 1191, 1497, 1800, 1884
BspCNI	CTCAG	7 cut(s)	519, 1367, 1378, 1648, 1703, 1996, 2299
BspHI	TCATGA	4 cut(s)	880, 1026, 1474, 2356
BspLI	GGNNCC	6 cut(s)	179, 290, 291, 537, 2037, 2053
BspMI	ACCTGC	1 cut(s)	1544
BspPI	GGATC	4 cut(s)	530, 543, 642, 1792
BspT104I	TTCGAA	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	1613
BsrBI	CCGCTC	1 cut(s)	153
BsrDI	GCAATG	3 cut(s)	414, 967, 1045
BsrGI	TGTACA	3 cut(s)	378, 551, 1976
BsrI	ACTGG	3 cut(s)	1225, 2099, 2236
BssECI	CCNNGG	6 cut(s)	236, 273, 283, 313, 1284, 2203
BssMI	GATC	6 cut(s)	535, 634, 841, 969, 1350, 1784
BssT1I	CCWWGG	3 cut(s)	273, 283, 1284
Bst2UI	CCWGG	1 cut(s)	1051
Bst4CI	ACNGT	6 cut(s)	317, 355, 556, 925, 1704, 2333
Bst6I	CTCTTC	3 cut(s)	812, 1071, 2238
BstAPI	GCANNNNNTGC	1 cut(s)	1963
BstAUI	TGTACA	3 cut(s)	378, 551, 1976
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	6 cut(s)	10, 47, 280, 874, 1499, 1964
BstDSI	CCRYGG	3 cut(s)	313, 1284, 2203
BstF5I	GGATG	6 cut(s)	308, 516, 837, 1120, 1294, 1390
BstHHI	GCGC	2 cut(s)	325, 661
BstKTI	GATC	6 cut(s)	538, 637, 844, 972, 1353, 1787
BstMAI	GTCTC	6 cut(s)	237, 853, 898, 1613, 1674, 2330
BstMBI	GATC	6 cut(s)	535, 634, 841, 969, 1350, 1784
BstMWI	GCNNNNNNNGC	7 cut(s)	275, 569, 869, 1503, 1649, 1963, 2035
BstNI	CCWGG	1 cut(s)	1051
BstNSI	RCATGY	2 cut(s)	1773, 1879
BstSCI	CCNGG	3 cut(s)	298, 1049, 1884
BstV1I	GCAGC	2 cut(s)	124, 256
BstV2I	GAAGAC	1 cut(s)	1400
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	5 cut(s)	194, 1191, 1497, 1800, 1884
BtgI	CCRYGG	3 cut(s)	313, 1284, 2203
BtgZI	GCGATG	1 cut(s)	1516
BtrI	CACGTC	1 cut(s)	736
BtsCI	GGATG	6 cut(s)	308, 516, 837, 1120, 1294, 1390
BtsIMutI	CAGTG	5 cut(s)	435, 1388, 1536, 2318, 2338
BveI	ACCTGC	1 cut(s)	1544
Cac8I	GCNNGC	6 cut(s)	10, 47, 280, 874, 1499, 1964
CaiI	CAGNNNCTG	2 cut(s)	137, 1538
CciI	TCATGA	4 cut(s)	880, 1026, 1474, 2356
CfoI	GCGC	2 cut(s)	325, 661
Cfr13I	GGNCC	3 cut(s)	193, 289, 1798
Csp6I	GTAC	4 cut(s)	66, 379, 552, 1977
CviQI	GTAC	4 cut(s)	66, 379, 552, 1977
DpnI	GATC	6 cut(s)	537, 636, 843, 971, 1352, 1786
DpnII	GATC	6 cut(s)	535, 634, 841, 969, 1350, 1784
DrdI	GACNNNNNNGTC	1 cut(s)	1402
DseDI	GACNNNNNNGTC	1 cut(s)	1402
EaeI	YGGCCR	1 cut(s)	1495
Eam1104I	CTCTTC	3 cut(s)	812, 1071, 2238
EarI	CTCTTC	3 cut(s)	812, 1071, 2238
Eco130I	CCWWGG	3 cut(s)	273, 283, 1284
Eco147I	AGGCCT	1 cut(s)	1191
Eco31I	GGTCTC	1 cut(s)	1613
Eco47I	GGWCC	1 cut(s)	289
Eco57I	CTGAAG	4 cut(s)	1306, 1412, 1508, 2262
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	1049
EcoT14I	CCWWGG	3 cut(s)	273, 283, 1284
EcoT22I	ATGCAT	2 cut(s)	516, 2270
ErhI	CCWWGG	3 cut(s)	273, 283, 1284
Esp3I	CGTCTC	1 cut(s)	237
FalI	AAGNNNNNCTT	4 cut(s)	1176, 1208, 1385, 1417
FaqI	GGGAC	3 cut(s)	302, 1585, 2105
FauI	CCCGC	2 cut(s)	17, 1000
FauNDI	CATATG	1 cut(s)	1666
FbaI	TGATCA	1 cut(s)	841
Fnu4HI	GCNGC	4 cut(s)	138, 141, 270, 1801
FokI	GGATG	6 cut(s)	315, 523, 844, 1127, 1301, 1397
Fsp4HI	GCNGC	4 cut(s)	138, 141, 270, 1801
FspBI	CTAG	5 cut(s)	63, 702, 858, 1170, 2276
GlaI	GCGC	2 cut(s)	324, 660
GluI	GCNGC	4 cut(s)	138, 141, 270, 1801
GsaI	CCCAGC	2 cut(s)	393, 1674
GsuI	CTGGAG	1 cut(s)	1919
HaeIII	GGCC	5 cut(s)	194, 1191, 1497, 1800, 1884
HapII	CCGG	3 cut(s)	300, 539, 1885
HhaI	GCGC	2 cut(s)	325, 661
Hin6I	GCGC	2 cut(s)	323, 659
HinP1I	GCGC	2 cut(s)	323, 659
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	1960
HpaI	GTTAAC	1 cut(s)	148
HpaII	CCGG	3 cut(s)	300, 539, 1885
HphI	GGTGA	8 cut(s)	253, 553, 832, 1252, 1478, 2189, 2222, 2231
Hpy166II	GTNNAC	5 cut(s)	148, 212, 381, 1422, 1873
Hpy188I	TCNGA	8 cut(s)	240, 1325, 1368, 1488, 1794, 1836, 1926, 2242
Hpy8I	GTNNAC	5 cut(s)	148, 212, 381, 1422, 1873
HpyAV	CCTTC	3 cut(s)	821, 1181, 1718
HpyCH4III	ACNGT	6 cut(s)	317, 355, 556, 925, 1704, 2333
HpyCH4IV	ACGT	1 cut(s)	735
HpyF10VI	GCNNNNNNNGC	7 cut(s)	275, 569, 869, 1503, 1649, 1963, 2035
HpySE526I	ACGT	1 cut(s)	735
HspAI	GCGC	2 cut(s)	323, 659
KflI	GGGWCCC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	841
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	6 cut(s)	535, 634, 841, 969, 1350, 1784
LmnI	GCTCC	1 cut(s)	2035
Lsp1109I	GCAGC	2 cut(s)	124, 256
LweI	GCATC	9 cut(s)	124, 293, 501, 994, 1375, 1459, 1493, 2008, 2170
MaeI	CTAG	5 cut(s)	63, 702, 858, 1170, 2276
MaeII	ACGT	1 cut(s)	735
MaeIII	GTNAC	9 cut(s)	253, 349, 431, 541, 597, 764, 1135, 1534, 2375
MalI	GATC	6 cut(s)	537, 636, 843, 971, 1352, 1786
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	6 cut(s)	535, 634, 841, 969, 1350, 1784
MboII	GAAGA	8 cut(s)	593, 799, 898, 1013, 1088, 1196, 1405, 2255
MfeI	CAATTG	2 cut(s)	602, 1461
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	1561
MlsI	TGGCCA	1 cut(s)	1497
MluNI	TGGCCA	1 cut(s)	1497
MlyI	GAGTC	5 cut(s)	1289, 1427, 1607, 1682, 1930
MmeI	TCCRAC	6 cut(s)	58, 612, 1126, 1296, 2094, 2148
Mox20I	TGGCCA	1 cut(s)	1497
Mph1103I	ATGCAT	2 cut(s)	516, 2270
MroXI	GAANNNNTTC	2 cut(s)	585, 1397
MscI	TGGCCA	1 cut(s)	1497
MseI	TTAA	4 cut(s)	147, 893, 1098, 2389
MslI	CAYNNNNRTG	3 cut(s)	519, 815, 1989
Msp20I	TGGCCA	1 cut(s)	1497
MspI	CCGG	3 cut(s)	300, 539, 1885
MspR9I	CCNGG	3 cut(s)	300, 1051, 1886
MunI	CAATTG	2 cut(s)	602, 1461
Mva1269I	GAATGC	6 cut(s)	514, 607, 661, 754, 1087, 1348
MvaI	CCWGG	1 cut(s)	1051
MwoI	GCNNNNNNNGC	7 cut(s)	275, 569, 869, 1503, 1649, 1963, 2035
NciI	CCSGG	2 cut(s)	300, 1886
NcoI	CCATGG	1 cut(s)	1284
NdeI	CATATG	1 cut(s)	1666
NdeII	GATC	6 cut(s)	535, 634, 841, 969, 1350, 1784
NlaIV	GGNNCC	6 cut(s)	179, 290, 291, 537, 2037, 2053
NmeAIII	GCCGAG	1 cut(s)	1965
NmuCI	GTSAC	2 cut(s)	541, 1534
NsiI	ATGCAT	2 cut(s)	516, 2270
NspI	RCATGY	2 cut(s)	1773, 1879
NspV	TTCGAA	1 cut(s)	475
PagI	TCATGA	4 cut(s)	880, 1026, 1474, 2356
PaqCI	CACCTGC	1 cut(s)	1544
PceI	AGGCCT	1 cut(s)	1191
PciI	ACATGT	1 cut(s)	1875
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PctI	GAATGC	6 cut(s)	514, 607, 661, 754, 1087, 1348
PdmI	GAANNNNTTC	2 cut(s)	585, 1397
PfeI	GAWTC	5 cut(s)	1198, 1292, 1739, 1814, 2045
PfoI	TCCNGGA	1 cut(s)	1049
PkrI	GCNGC	4 cut(s)	139, 142, 271, 1802
PleI	GAGTC	5 cut(s)	1288, 1426, 1606, 1682, 1929
PpsI	GAGTC	5 cut(s)	1288, 1426, 1606, 1682, 1929
PpuMI	RGGWCCY	1 cut(s)	289
PscI	ACATGT	1 cut(s)	1875
PsiI	TTATAA	1 cut(s)	665
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	1049
PspFI	CCCAGC	2 cut(s)	389, 1670
PspGI	CCWGG	1 cut(s)	1049
PspN4I	GGNNCC	6 cut(s)	179, 290, 291, 537, 2037, 2053
PspPI	GGNCC	3 cut(s)	193, 289, 1798
PspPPI	RGGWCCY	1 cut(s)	289
PstNI	CAGNNNCTG	2 cut(s)	137, 1538
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	4 cut(s)	67, 380, 553, 1978
RsaNI	GTAC	4 cut(s)	66, 379, 552, 1977
RseI	CAYNNNNRTG	3 cut(s)	519, 815, 1989
SaqAI	TTAA	4 cut(s)	147, 893, 1098, 2389
SatI	GCNGC	4 cut(s)	138, 141, 270, 1801
Sau3AI	GATC	6 cut(s)	535, 634, 841, 969, 1350, 1784
Sau96I	GGNCC	3 cut(s)	193, 289, 1798
SchI	GAGTC	5 cut(s)	1289, 1427, 1607, 1682, 1930
ScrFI	CCNGG	3 cut(s)	300, 1051, 1886
SduI	GDGCHC	1 cut(s)	1561
SfaNI	GCATC	9 cut(s)	124, 293, 501, 994, 1375, 1459, 1493, 2008, 2170
SfuI	TTCGAA	1 cut(s)	475
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	3 cut(s)	519, 815, 1989
SmlI	CTYRAG	3 cut(s)	771, 1453, 2346
SmoI	CTYRAG	3 cut(s)	771, 1453, 2346
SpeI	ACTAGT	2 cut(s)	62, 857
SseBI	AGGCCT	1 cut(s)	1191
SsiI	CCGC	8 cut(s)	10, 141, 151, 572, 876, 1007, 1801, 2233
SspI	AATATT	1 cut(s)	204
SspMI	CTAG	5 cut(s)	63, 702, 858, 1170, 2276
StuI	AGGCCT	1 cut(s)	1191
StyD4I	CCNGG	3 cut(s)	298, 1049, 1884
StyI	CCWWGG	3 cut(s)	273, 283, 1284
TaaI	ACNGT	6 cut(s)	317, 355, 556, 925, 1704, 2333
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	3 cut(s)	114, 198, 475
TatI	WGTACW	4 cut(s)	65, 378, 551, 1976
TauI	GCSGC	2 cut(s)	143, 1803
TfiI	GAWTC	5 cut(s)	1198, 1292, 1739, 1814, 2045
Tru1I	TTAA	4 cut(s)	147, 893, 1098, 2389
Tru9I	TTAA	4 cut(s)	147, 893, 1098, 2389
TscAI	CASTG	5 cut(s)	442, 1395, 1543, 2325, 2338
TseFI	GTSAC	2 cut(s)	541, 1534
TseI	GCWGC	2 cut(s)	137, 269
Tsp45I	GTSAC	2 cut(s)	541, 1534
TspGWI	ACGGA	1 cut(s)	2057
TspRI	CASTG	5 cut(s)	442, 1395, 1543, 2325, 2338
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	6 cut(s)	19, 80, 120, 216, 361, 889
XceI	RCATGY	2 cut(s)	1773, 1879
XcmI	CCANNNNNNNNNTGG	1 cut(s)	953
XmnI	GAANNNNTTC	2 cut(s)	585, 1397
XspI	CTAG	5 cut(s)	63, 702, 858, 1170, 2276
Zsp2I	ATGCAT	2 cut(s)	516, 2270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.