Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003910

Physical Location & Seq

Genomic Coordinates Forward (+)

3252899 .. 3255613

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG041200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2367 bp

ATGATTAACCGCCAACTGAATTTCAAAACCCTCCAACGAATACGCAAGCCACGACTAAGCCACTCTAAATTCCATTCCTTAAAAGACGAACACCACCTGTTCGATGAAATTCCCCAACCAGACGCTGCTGCAGTTAACCGCTCCATGCTCAACTATATGCACAGGAACCTTTCAGCTACGGCCCTCGAAATATTTAGTAAACAAATTCAACTGTGTTCGTCTCCTCGGAACATTGATGAAGTTACCCTCACCCTTGCTGTCAAGGCTTGCCAAGGGGACCCGAAACCCGGATGCCAAATCCACGGTTTTGCAGTTTCTTCTGGGTTTATTTCCTATGTTACAGTTTCAAATTCGTTGATGAGTATGTACACTAAAGCTGGGAGGTTTGATAGTGCAATGTGTATTTTTGATGGTATGTGTTATACTGATATAGTTTCTTGGAATACTATTCTTTCGGGGTTTCGAACGAGTGAGGGGGCGTTGAGTTTTGCTCTCAGGATGCATTCAAATGGGATTGCTTTGGATCCGGTGACTTATTGTACAGTTCTTGCTTTTTGTGCGGAGTATGAAGATTTTCTGTTTGGGTTACAATTGCATTCTCTCATACTTCAGTCTGGGTTGGATCGTGAAGTTTTTGTTGGGAATGCGCTTATAAGTATGTATTCAAGGTGGAGACGTTTGATAGAAGCTAGGAATGTGTTTGATGAAATGGGGAATAAGGACGTGGTTTCTTGGAATGCAATACTATCAGGTTACTCTCAAGAGGGAAATCATGGGCTTGAAGCAGTTTTACTCTTCATTGAAATGGTGAGAGAAGGGATGAAACTTGATCATGTCTCATTTACTAGCGCAGTTTCAGCTTGCGGGCATGAGAAGAATTTAAGGCTTGGGAGACAGATACATGGCTTGACAGTAAAATCAGGATATGAAAGTCATGTTTCGGTTGGGAACGTGTTGATCTCAACATATTCAAAGAGTGGTGTCAGTGAAGATGCGGGATTGGTGTTTCAGCTCATGAACAATCGCAATGTAATTTCCTGGACTACAATGATTTCTATGGACGAAGAGAATGCCATCTCTTTATTTAATGAGATGAGATTGGATGGAGTATATCCAAATGATGTTACATTTGTTGGACTAATCCATGCTATATCAACTAGGAAGTTGGTGGAAGAAGGCCTTATGATTCATGGGTTTTGCACCAAGACTGGATTTTTGTCAAAGCATAATGTTTGCAATAGCTTTATCACCATGTATGCTAAGTTTGAGTCCATGGATGATTCTGTCAAGGTTTTTGAGGAGTTGGACTTCAGAGAAATCATATCATGGAATGCTTTGATCTCAGGGTATGCTCAGAACAGGCTGTGTCAGGATGCACTGAAGACATTCTTGTCTGCAATCATGGAGTCCACGCCTAACAACTACACATTTGGTAGTGTCTTGAGTGCAATTGGTGATGCTCATGACATTTCTCTGAAGTATGGCCAGCGATGCCACTCCTTTTTGATAAAACTTGGATCAGTCACTGACCCGATTACAGCGGGTGCTCTCCTTGATATGTATGCAAAGCGAGGAAGCATTTGCGAGTCCCAAAGAGTTTTCAGTGAGACCCCTCACAGAACTCAGTTTGCTTGGACAGCAATAATATCTGCATATGCTGGGCATGGAGACTATGACTCAGTAATCGAATTATTCTACCAGATGGATAAAGAAGGGGTGAGACCTGACTCGATCACATTTCTTTCTGTACTAAGCGCATGTAGCAGAAAGGGATCAGTTGAGATGGGCCGCCATTTCTTTGAATCAATGGTCAAAGACTATCAGATTGAACCATCTCCTCAACATTATGCTTGTATGGTGGACATGTTAGGCCGGGCAGGAAAGCTGGAGGAAGCAGAGGAATTGACGAGTCAGATGTCAGGACAGCCAAGTTTTTCTTTGTTGCAAAGCTTGCTTGGGGCTTGCACAATACATGGGAATGTGGAGATGGCTGAGAGAGTTGCAGATGCTTTAATGCGAATGGAGCCAACTGAATCAGGTTCCTATGTGCTGTTGTCCAACTTGTATGCAGAGAAAGGGGAATGGGAAATGGTGGCGAAAATAAGGAAACAGATGAGAGATAGGGGAGTGAGAAAGGAAGTGGGATTTAGTTGGTTGGATAATGGTGATGCTGATGGTTCTTTGTATCTCCACGGGTTTTCGTCAGGTGATACCTCTCACCGCCAGTCTGAAGAGATAAGTAGAATGGCGAAGTGCATAGGACTAGAAATGAAGTTTTTGAGAGAGAACATGGCTGAGATAGGCTCACTGAAACAAGACAGTGAGACACATTCTCAAGTGCCTCATGATGAAGAAGGCTTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

788

Amino Acids

88.14

Weight (kDa)

5.72

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	240 - 288	1.5e-08	PPR repeat family
PPR_2	PF13041	542 - 588	8.3e-10	PPR repeat family
E_motif	PF20431	658 - 719	8.3e-19	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32430 AT4G32430
fragaria_vesca	FvH4_1g03430
malus_domestica	MD15G1174400.v1.1
prunus_persica	Prupe.5G003100_v2.0.a1 Prupe.7G240400_v2.0.a1 Prupe.7G241500_v2.0.a1 Prupe.7G241700_v2.0.a1 Prupe.8G249000_v2.0.a1
pyrus_communis	pycom15g15600
rosa_chinensis	RchiOBHm_Chr2g0088661 RchiOBHm_Chr5g0002171
rosa_laevigata	RLG00000015973 RLG00000015974 RLG00000031004
rosa_multiflora	Rmu_sc0006835.1_g000012 Rmu_sc0006835.1_g000013 Rmu_sc0013155.1_g000001 Rmu_sc0015442.1_g000012 Rmu_sc0015442.1_g000013 Rmu_sc0024326.1_g000001 Rmu_sc0041985.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152420
rosa_rugosa	Rorug01G0485700
rosa_samantha	Rh2AG041200 Rh2BG039900 Rh2CG040700 Rh2DG040300 Rh5AG016800 Rh5AG016900 Rh5CG018300 Rh5CG018400 Rh5CG018500
rosa_wichuraiana	Rw2G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
AasI	GACNNNNNNGTC	1 cut(s)	1390
AccBSI	CCGCTC	1 cut(s)	141
AciI	CCGC	8 cut(s)	10, 139, 560, 864, 995, 1541, 1789, 2221
AclWI	GGATC	5 cut(s)	518, 531, 630, 1525, 1780
AcoI	YGGCCR	1 cut(s)	1483
AcsI	RAATTY	6 cut(s)	19, 68, 108, 204, 349, 877
AcuI	CTGAAG	5 cut(s)	593, 1294, 1400, 1496, 2250
AfaI	GTAC	3 cut(s)	368, 541, 1749
AfiI	CCNNNNNNNGG	1 cut(s)	287
AflIII	ACRYGT	2 cut(s)	951, 1863
AjiI	CACGTC	1 cut(s)	724
AjnI	CCWGG	1 cut(s)	1037
AjuI	GAANNNNNNNTTGG	2 cut(s)	621, 653
AluBI	AGCT	8 cut(s)	176, 377, 689, 860, 1012, 1242, 1885, 1950
AluI	AGCT	8 cut(s)	176, 377, 689, 860, 1012, 1242, 1885, 1950
Alw21I	GWGCWC	1 cut(s)	1549
Alw26I	GTCTC	8 cut(s)	225, 667, 841, 886, 1601, 1662, 1714, 2318
AlwI	GGATC	5 cut(s)	518, 531, 630, 1525, 1780
AlwNI	CAGNNNCTG	2 cut(s)	125, 1526
AoxI	GGCC	5 cut(s)	180, 1177, 1483, 1786, 1870
ApeKI	GCWGC	2 cut(s)	125, 128
ApoI	RAATTY	6 cut(s)	19, 68, 108, 204, 349, 877
ArsI	GACNNNNNNTTYG	2 cut(s)	1198, 1230
Asp700I	GAANNNNTTC	2 cut(s)	573, 1385
AspLEI	GCGC	3 cut(s)	649, 851, 1757
AspS9I	GGNCC	3 cut(s)	181, 277, 1786
AsuC2I	CCSGG	2 cut(s)	288, 1874
AsuHPI	GGTGA	9 cut(s)	241, 541, 820, 1240, 1466, 1729, 2177, 2210, 2219
AsuII	TTCGAA	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	1485
BamHI	GGATCC	1 cut(s)	523
BarI	GAAGNNNNNNTAC	2 cut(s)	774, 806
BbsI	GAAGAC	1 cut(s)	1388
Bbv12I	GWGCWC	1 cut(s)	1549
BbvI	GCAGC	2 cut(s)	112, 115
BccI	CCATC	8 cut(s)	404, 1082, 1097, 1696, 1777, 1840, 1981, 2168
BceAI	ACGGC	1 cut(s)	195
BcgI	CGANNNNNNTGC	2 cut(s)	1052, 1086
BciT130I	CCWGG	1 cut(s)	1039
BclI	TGATCA	1 cut(s)	829
BcnI	CCSGG	2 cut(s)	288, 1874
BcoDI	GTCTC	8 cut(s)	225, 667, 841, 886, 1601, 1662, 1714, 2318
BfaI	CTAG	4 cut(s)	690, 846, 1158, 2264
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	3 cut(s)	126, 129, 1789
BlsI	GCNGC	3 cut(s)	127, 130, 1790
Bme1390I	CCNGG	3 cut(s)	288, 1039, 1874
Bme18I	GGWCC	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	724
BmgT120I	GGNCC	3 cut(s)	181, 277, 1786
BmiI	GGNNCC	6 cut(s)	167, 278, 279, 525, 2025, 2041
BmrFI	CCNGG	3 cut(s)	288, 1039, 1874
BmsI	GCATC	8 cut(s)	281, 489, 982, 1363, 1447, 1481, 1996, 2158
BpiI	GAAGAC	1 cut(s)	1388
BplI	GAGNNNNNCTC	4 cut(s)	475, 507, 2288, 2320
BpmI	CTGGAG	1 cut(s)	1907
Bpu14I	TTCGAA	1 cut(s)	463
BpuEI	CTTGAG	3 cut(s)	744, 1462, 2319
BpuMI	CCSGG	2 cut(s)	288, 1874
BsaI	GGTCTC	2 cut(s)	1601, 1714
BsaJI	CCNNGG	5 cut(s)	224, 271, 301, 1272, 2191
BsaWI	WCCGGW	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse1I	ACTGG	2 cut(s)	1213, 2224
Bse3DI	GCAATG	2 cut(s)	402, 1033
BseBI	CCWGG	1 cut(s)	1039
BseDI	CCNNGG	5 cut(s)	224, 271, 301, 1272, 2191
BseGI	GGATG	6 cut(s)	296, 504, 825, 1108, 1282, 1378
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMI	GCAATG	2 cut(s)	402, 1033
BseMII	CTCAG	7 cut(s)	508, 1356, 1367, 1637, 1692, 1983, 2286
BseNI	ACTGG	2 cut(s)	1213, 2224
BseRI	GAGGAG	3 cut(s)	213, 1313, 1827
BseXI	GCAGC	2 cut(s)	112, 115
BseYI	CCCAGC	2 cut(s)	377, 1658
BshFI	GGCC	5 cut(s)	182, 1179, 1485, 1788, 1872
BsiHKAI	GWGCWC	1 cut(s)	1549
BsiSI	CCGG	3 cut(s)	288, 527, 1873
BslFI	GGGAC	2 cut(s)	290, 1573
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	8 cut(s)	225, 667, 841, 886, 1601, 1662, 1714, 2318
BsmBI	CGTCTC	2 cut(s)	225, 667
BsmFI	GGGAC	2 cut(s)	290, 1573
BsmI	GAATGC	6 cut(s)	502, 595, 649, 742, 1075, 1336
BsnI	GGCC	5 cut(s)	182, 1179, 1485, 1788, 1872
Bso31I	GGTCTC	2 cut(s)	1601, 1714
Bsp119I	TTCGAA	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	1549
Bsp1407I	TGTACA	2 cut(s)	366, 539
Bsp143I	GATC	8 cut(s)	523, 622, 829, 957, 1338, 1517, 1731, 1772
Bsp19I	CCATGG	1 cut(s)	1272
BspACI	CCGC	8 cut(s)	10, 139, 560, 864, 995, 1541, 1789, 2221
BspANI	GGCC	5 cut(s)	182, 1179, 1485, 1788, 1872
BspCNI	CTCAG	7 cut(s)	507, 1355, 1366, 1636, 1691, 1984, 2287
BspHI	TCATGA	3 cut(s)	1014, 1462, 2344
BspLI	GGNNCC	6 cut(s)	167, 278, 279, 525, 2025, 2041
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	5 cut(s)	518, 531, 630, 1525, 1780
BspT104I	TTCGAA	1 cut(s)	463
BspTNI	GGTCTC	2 cut(s)	1601, 1714
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	2 cut(s)	402, 1033
BsrGI	TGTACA	2 cut(s)	366, 539
BsrI	ACTGG	2 cut(s)	1213, 2224
BssECI	CCNNGG	5 cut(s)	224, 271, 301, 1272, 2191
BssMI	GATC	8 cut(s)	523, 622, 829, 957, 1338, 1517, 1731, 1772
BssT1I	CCWWGG	2 cut(s)	271, 1272
Bst2UI	CCWGG	1 cut(s)	1039
Bst4CI	ACNGT	6 cut(s)	213, 305, 343, 544, 913, 2321
Bst6I	CTCTTC	3 cut(s)	800, 1059, 2226
BstAPI	GCANNNNNTGC	1 cut(s)	1951
BstAUI	TGTACA	2 cut(s)	366, 539
BstBI	TTCGAA	1 cut(s)	463
BstC8I	GCNNGC	7 cut(s)	47, 268, 862, 866, 1487, 1952, 1963
BstDSI	CCRYGG	3 cut(s)	301, 1272, 2191
BstF5I	GGATG	6 cut(s)	296, 504, 825, 1108, 1282, 1378
BstHHI	GCGC	3 cut(s)	649, 851, 1757
BstKTI	GATC	8 cut(s)	526, 625, 832, 960, 1341, 1520, 1734, 1775
BstMAI	GTCTC	8 cut(s)	225, 667, 841, 886, 1601, 1662, 1714, 2318
BstMBI	GATC	8 cut(s)	523, 622, 829, 957, 1338, 1517, 1731, 1772
BstMWI	GCNNNNNNNGC	8 cut(s)	263, 557, 857, 1491, 1637, 1761, 1951, 2023
BstNI	CCWGG	1 cut(s)	1039
BstNSI	RCATGY	2 cut(s)	1761, 1867
BstSCI	CCNGG	3 cut(s)	286, 1037, 1872
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	112, 115
BstV2I	GAAGAC	1 cut(s)	1388
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuRI	GGCC	5 cut(s)	182, 1179, 1485, 1788, 1872
BtgI	CCRYGG	3 cut(s)	301, 1272, 2191
BtgZI	GCGATG	1 cut(s)	1504
BtrI	CACGTC	1 cut(s)	724
BtsCI	GGATG	6 cut(s)	296, 504, 825, 1108, 1282, 1378
BtsIMutI	CAGTG	6 cut(s)	991, 1376, 1524, 1609, 2306, 2326
Cac8I	GCNNGC	7 cut(s)	47, 268, 862, 866, 1487, 1952, 1963
CaiI	CAGNNNCTG	2 cut(s)	125, 1526
CciI	TCATGA	3 cut(s)	1014, 1462, 2344
CfoI	GCGC	3 cut(s)	649, 851, 1757
Cfr13I	GGNCC	3 cut(s)	181, 277, 1786
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	367, 540, 1748
CviQI	GTAC	3 cut(s)	367, 540, 1748
DpnI	GATC	8 cut(s)	525, 624, 831, 959, 1340, 1519, 1733, 1774
DpnII	GATC	8 cut(s)	523, 622, 829, 957, 1338, 1517, 1731, 1772
DrdI	GACNNNNNNGTC	1 cut(s)	1390
DseDI	GACNNNNNNGTC	1 cut(s)	1390
EaeI	YGGCCR	1 cut(s)	1483
Eam1104I	CTCTTC	3 cut(s)	800, 1059, 2226
EarI	CTCTTC	3 cut(s)	800, 1059, 2226
Eco130I	CCWWGG	2 cut(s)	271, 1272
Eco147I	AGGCCT	1 cut(s)	1179
Eco31I	GGTCTC	2 cut(s)	1601, 1714
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	5 cut(s)	593, 1294, 1400, 1496, 2250
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	1037
EcoT14I	CCWWGG	2 cut(s)	271, 1272
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	2 cut(s)	271, 1272
Esp3I	CGTCTC	2 cut(s)	225, 667
FalI	AAGNNNNNCTT	6 cut(s)	1164, 1196, 1373, 1405, 1921, 1953
FaqI	GGGAC	2 cut(s)	290, 1573
FauI	CCCGC	3 cut(s)	857, 988, 1534
FauNDI	CATATG	1 cut(s)	1654
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	3 cut(s)	126, 129, 1789
FokI	GGATG	6 cut(s)	303, 511, 832, 1115, 1289, 1385
Fsp4HI	GCNGC	3 cut(s)	126, 129, 1789
FspBI	CTAG	4 cut(s)	690, 846, 1158, 2264
GlaI	GCGC	3 cut(s)	648, 850, 1756
GluI	GCNGC	3 cut(s)	126, 129, 1789
GsaI	CCCAGC	2 cut(s)	381, 1662
GsuI	CTGGAG	1 cut(s)	1907
HaeIII	GGCC	5 cut(s)	182, 1179, 1485, 1788, 1872
HapII	CCGG	3 cut(s)	288, 527, 1873
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	3 cut(s)	649, 851, 1757
Hin6I	GCGC	3 cut(s)	647, 849, 1755
HinP1I	GCGC	3 cut(s)	647, 849, 1755
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	1948
HpaI	GTTAAC	1 cut(s)	136
HpaII	CCGG	3 cut(s)	288, 527, 1873
HphI	GGTGA	9 cut(s)	241, 541, 820, 1240, 1466, 1729, 2177, 2210, 2219
Hpy166II	GTNNAC	5 cut(s)	136, 200, 369, 1410, 1861
Hpy188I	TCNGA	7 cut(s)	228, 1313, 1356, 1476, 1824, 1914, 2230
Hpy8I	GTNNAC	5 cut(s)	136, 200, 369, 1410, 1861
HpyAV	CCTTC	4 cut(s)	809, 1169, 1706, 2348
HpyCH4III	ACNGT	6 cut(s)	213, 305, 343, 544, 913, 2321
HpyCH4IV	ACGT	3 cut(s)	676, 723, 951
HpyF10VI	GCNNNNNNNGC	8 cut(s)	263, 557, 857, 1491, 1637, 1761, 1951, 2023
HpySE526I	ACGT	3 cut(s)	676, 723, 951
HspAI	GCGC	3 cut(s)	647, 849, 1755
KflI	GGGWCCC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	829
KspAI	GTTAAC	1 cut(s)	136
Kzo9I	GATC	8 cut(s)	523, 622, 829, 957, 1338, 1517, 1731, 1772
LmnI	GCTCC	2 cut(s)	146, 2023
Lsp1109I	GCAGC	2 cut(s)	112, 115
LweI	GCATC	8 cut(s)	281, 489, 982, 1363, 1447, 1481, 1996, 2158
MaeI	CTAG	4 cut(s)	690, 846, 1158, 2264
MaeII	ACGT	3 cut(s)	676, 723, 951
MaeIII	GTNAC	7 cut(s)	241, 337, 529, 585, 752, 1123, 1522
MalI	GATC	8 cut(s)	525, 624, 831, 959, 1340, 1519, 1733, 1774
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	8 cut(s)	523, 622, 829, 957, 1338, 1517, 1731, 1772
MfeI	CAATTG	2 cut(s)	590, 1449
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	1549
MlsI	TGGCCA	1 cut(s)	1485
MluNI	TGGCCA	1 cut(s)	1485
MlyI	GAGTC	6 cut(s)	1277, 1415, 1595, 1670, 1721, 1918
MmeI	TCCRAC	6 cut(s)	58, 600, 1114, 1284, 2082, 2136
Mox20I	TGGCCA	1 cut(s)	1485
Mph1103I	ATGCAT	1 cut(s)	504
MroXI	GAANNNNTTC	2 cut(s)	573, 1385
MscI	TGGCCA	1 cut(s)	1485
MseI	TTAA	6 cut(s)	6, 80, 135, 881, 1086, 2012
MslI	CAYNNNNRTG	3 cut(s)	507, 803, 1977
Msp20I	TGGCCA	1 cut(s)	1485
MspA1I	CMGCKG	1 cut(s)	1541
MspI	CCGG	3 cut(s)	288, 527, 1873
MspR9I	CCNGG	3 cut(s)	288, 1039, 1874
MunI	CAATTG	2 cut(s)	590, 1449
Mva1269I	GAATGC	6 cut(s)	502, 595, 649, 742, 1075, 1336
MvaI	CCWGG	1 cut(s)	1039
MwoI	GCNNNNNNNGC	8 cut(s)	263, 557, 857, 1491, 1637, 1761, 1951, 2023
NciI	CCSGG	2 cut(s)	288, 1874
NcoI	CCATGG	1 cut(s)	1272
NdeI	CATATG	1 cut(s)	1654
NdeII	GATC	8 cut(s)	523, 622, 829, 957, 1338, 1517, 1731, 1772
NlaIV	GGNNCC	6 cut(s)	167, 278, 279, 525, 2025, 2041
NmuCI	GTSAC	2 cut(s)	529, 1522
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	2 cut(s)	1761, 1867
NspV	TTCGAA	1 cut(s)	463
PagI	TCATGA	3 cut(s)	1014, 1462, 2344
PceI	AGGCCT	1 cut(s)	1179
PciI	ACATGT	1 cut(s)	1863
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PctI	GAATGC	6 cut(s)	502, 595, 649, 742, 1075, 1336
PdmI	GAANNNNTTC	2 cut(s)	573, 1385
PfeI	GAWTC	4 cut(s)	1186, 1280, 1802, 2033
PfoI	TCCNGGA	1 cut(s)	1037
PkrI	GCNGC	3 cut(s)	127, 130, 1790
PleI	GAGTC	6 cut(s)	1276, 1414, 1594, 1670, 1721, 1917
PpsI	GAGTC	6 cut(s)	1276, 1414, 1594, 1670, 1721, 1917
PpuMI	RGGWCCY	1 cut(s)	277
PscI	ACATGT	1 cut(s)	1863
PsiI	TTATAA	1 cut(s)	653
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	1037
PspFI	CCCAGC	2 cut(s)	377, 1658
PspGI	CCWGG	1 cut(s)	1037
PspN4I	GGNNCC	6 cut(s)	167, 278, 279, 525, 2025, 2041
PspPI	GGNCC	3 cut(s)	181, 277, 1786
PspPPI	RGGWCCY	1 cut(s)	277
PstI	CTGCAG	1 cut(s)	133
PstNI	CAGNNNCTG	2 cut(s)	125, 1526
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	3 cut(s)	368, 541, 1749
RsaNI	GTAC	3 cut(s)	367, 540, 1748
RseI	CAYNNNNRTG	3 cut(s)	507, 803, 1977
SaqAI	TTAA	6 cut(s)	6, 80, 135, 881, 1086, 2012
SatI	GCNGC	3 cut(s)	126, 129, 1789
Sau3AI	GATC	8 cut(s)	523, 622, 829, 957, 1338, 1517, 1731, 1772
Sau96I	GGNCC	3 cut(s)	181, 277, 1786
SchI	GAGTC	6 cut(s)	1277, 1415, 1595, 1670, 1721, 1918
ScrFI	CCNGG	3 cut(s)	288, 1039, 1874
SduI	GDGCHC	1 cut(s)	1549
SfaNI	GCATC	8 cut(s)	281, 489, 982, 1363, 1447, 1481, 1996, 2158
SfcI	CTRYAG	1 cut(s)	129
SfuI	TTCGAA	1 cut(s)	463
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	3 cut(s)	507, 803, 1977
SmlI	CTYRAG	3 cut(s)	759, 1441, 2334
SmoI	CTYRAG	3 cut(s)	759, 1441, 2334
SseBI	AGGCCT	1 cut(s)	1179
SsiI	CCGC	8 cut(s)	10, 139, 560, 864, 995, 1541, 1789, 2221
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	4 cut(s)	690, 846, 1158, 2264
StuI	AGGCCT	1 cut(s)	1179
StyD4I	CCNGG	3 cut(s)	286, 1037, 1872
StyI	CCWWGG	2 cut(s)	271, 1272
TaaI	ACNGT	6 cut(s)	213, 305, 343, 544, 913, 2321
TaiI	ACGT	3 cut(s)	679, 726, 954
TaqI	TCGA	5 cut(s)	102, 186, 463, 1686, 1730
TatI	WGTACW	3 cut(s)	366, 539, 1747
TauI	GCSGC	1 cut(s)	1791
TfiI	GAWTC	4 cut(s)	1186, 1280, 1802, 2033
Tru1I	TTAA	6 cut(s)	6, 80, 135, 881, 1086, 2012
Tru9I	TTAA	6 cut(s)	6, 80, 135, 881, 1086, 2012
TscAI	CASTG	6 cut(s)	991, 1383, 1531, 1609, 2313, 2326
TseFI	GTSAC	2 cut(s)	529, 1522
TseI	GCWGC	2 cut(s)	125, 128
Tsp45I	GTSAC	2 cut(s)	529, 1522
TspRI	CASTG	6 cut(s)	991, 1383, 1531, 1609, 2313, 2326
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	6 cut(s)	19, 68, 108, 204, 349, 877
XceI	RCATGY	2 cut(s)	1761, 1867
XmnI	GAANNNNTTC	2 cut(s)	573, 1385
XspI	CTAG	4 cut(s)	690, 846, 1158, 2264
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.