Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003910

Physical Location & Seq

Genomic Coordinates Forward (+)

21490164 .. 21491083

Gene Structure 920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G249000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTTCTGTAAGCAACATCAACTACATTTGTCTCATAACATCGATGAAGTTACCGTTACCCTTGCTGTCAAGGCCTGTCAAGGGGACCCCAAACCCGGATGCCAAATTCACGGGTTTGCAGTTTCTTCTGGGTTTGCTTCGTATACTACGATTTCAAATTCTTTGATGAGTATGTACACCAAAGCTGGACAGTTTGATGGTCCCTTACTTATCTTTGAGACTATGTGCTATATTGATATAGTTTCTTGGAATACTATTCTTTCGGGGTTTCGAACAAGTGAAGGTGCATTGAATTTTGCTCTTAGGATGAATTTTAATGGAGTTGTTTTTTATCCAGTGACTTATACTGCGATTCTTGCTTTTTGTGCGGATCATGAAGATTTTCTATTTGGATTACAACTGCATTCTCTTATATTTAAGTCTGGTTTATATGGTGAAGTTTTTGTTGGAAATGCACTTATAAGTATGTATTCGAGGTCGAGGCTGTTAATAGAAGCTAGGAGTGTTTTTGATGAAATGGAGAAGGAGGATCTGGTTTCATGGAATGCAATACTATCAGGTTACTCTCAAGAGGGAAATCATGGCCTTGAGGCGATTTTTGTCTTTATTGAGATGGTGGAGAAGGGATGGGTGTCTTGGACAACTATGATTTCAATGGACGAAGAAGATGTCATCTCTCTATTTAATGAGATGAGATTGGATGGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

237

Amino Acids

26.51

Weight (kDa)

4.72

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32430 AT4G32430
fragaria_vesca	FvH4_1g03430
malus_domestica	MD15G1174400.v1.1
prunus_persica	Prupe.5G003100_v2.0.a1 Prupe.7G240400_v2.0.a1 Prupe.7G241500_v2.0.a1 Prupe.7G241700_v2.0.a1 Prupe.8G249000_v2.0.a1
pyrus_communis	pycom15g15600
rosa_chinensis	RchiOBHm_Chr2g0088661 RchiOBHm_Chr5g0002171
rosa_laevigata	RLG00000015973 RLG00000015974 RLG00000031004
rosa_multiflora	Rmu_sc0006835.1_g000012 Rmu_sc0006835.1_g000013 Rmu_sc0013155.1_g000001 Rmu_sc0015442.1_g000012 Rmu_sc0015442.1_g000013 Rmu_sc0024326.1_g000001 Rmu_sc0041985.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152420
rosa_rugosa	Rorug01G0485700
rosa_samantha	Rh2AG041200 Rh2BG039900 Rh2CG040700 Rh2DG040300 Rh5AG016800 Rh5AG016900 Rh5CG018300 Rh5CG018400 Rh5CG018500
rosa_wichuraiana	Rw2G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
AccI	GTMKAC	1 cut(s)	143
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	2 cut(s)	378, 537
AcsI	RAATTY	4 cut(s)	105, 157, 292, 310
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	81, 95
AgsI	TTSAA	3 cut(s)	156, 292, 654
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	2 cut(s)	185, 497
AluI	AGCT	2 cut(s)	185, 497
Alw26I	GTCTC	2 cut(s)	36, 212
AlwI	GGATC	2 cut(s)	378, 537
AoxI	GGCC	2 cut(s)	72, 583
ApoI	RAATTY	4 cut(s)	105, 157, 292, 310
ArsI	GACNNNNNNTTYG	2 cut(s)	654, 686
Asp700I	GAANNNNTTC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	85, 200
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	446
AsuII	TTCGAA	1 cut(s)	271
AvaII	GGWCC	2 cut(s)	85, 200
BccI	CCATC	4 cut(s)	191, 607, 621, 695
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	36, 212
BfaI	CTAG	1 cut(s)	498
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	2 cut(s)	85, 200
BmgT120I	GGNCC	2 cut(s)	85, 200
BmiI	GGNNCC	3 cut(s)	86, 87, 202
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	89
Bpu14I	TTCGAA	1 cut(s)	271
BpuEI	CTTGAG	2 cut(s)	552, 608
BpuMI	CCSGG	1 cut(s)	96
Bsa29I	ATCGAT	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 95
Bse1I	ACTGG	1 cut(s)	335
BseCI	ATCGAT	1 cut(s)	42
BseGI	GGATG	4 cut(s)	104, 312, 632, 706
BseLI	CCNNNNNNNGG	2 cut(s)	81, 95
BseNI	ACTGG	1 cut(s)	335
BshFI	GGCC	2 cut(s)	74, 585
BshVI	ATCGAT	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	2 cut(s)	98, 186
BslI	CCNNNNNNNGG	2 cut(s)	81, 95
BsmAI	GTCTC	2 cut(s)	36, 212
BsmFI	GGGAC	2 cut(s)	98, 186
BsmI	GAATGC	2 cut(s)	403, 550
BsnI	GGCC	2 cut(s)	74, 585
Bsp119I	TTCGAA	1 cut(s)	271
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	370, 529
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	2 cut(s)	74, 585
BspDI	ATCGAT	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	3 cut(s)	86, 87, 202
BspPI	GGATC	2 cut(s)	378, 537
BspT104I	TTCGAA	1 cut(s)	271
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	335
BssMI	GATC	2 cut(s)	370, 529
BssNAI	GTATAC	1 cut(s)	144
Bst1107I	GTATAC	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	55, 192
BstAUI	TGTACA	1 cut(s)	174
BstBI	TTCGAA	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	302
BstF5I	GGATG	4 cut(s)	104, 312, 632, 706
BstKTI	GATC	2 cut(s)	373, 532
BstMAI	GTCTC	2 cut(s)	36, 212
BstMBI	GATC	2 cut(s)	370, 529
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 356, 365
BstSCI	CCNGG	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BstZ17I	GTATAC	1 cut(s)	144
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	74, 585
BsuTUI	ATCGAT	1 cut(s)	42
BtsCI	GGATG	4 cut(s)	104, 312, 632, 706
BtsIMutI	CAGTG	1 cut(s)	342
CciI	TCATGA	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	85, 200
ClaI	ATCGAT	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	3 cut(s)	374, 540, 581
CviJI	RGCY	5 cut(s)	74, 185, 484, 497, 585
CviKI_1	RGCY	5 cut(s)	74, 185, 484, 497, 585
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	2 cut(s)	372, 531
DpnII	GATC	2 cut(s)	370, 529
Eco147I	AGGCCT	1 cut(s)	74
Eco47I	GGWCC	2 cut(s)	85, 200
EcoO109I	RGGNCCY	1 cut(s)	85
FaeI	CATG	3 cut(s)	377, 543, 584
FaqI	GGGAC	2 cut(s)	98, 186
FatI	CATG	3 cut(s)	373, 539, 580
FblI	GTMKAC	1 cut(s)	143
FokI	GGATG	3 cut(s)	111, 319, 639
FspBI	CTAG	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	74, 585
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	3 cut(s)	377, 543, 584
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	144, 177
Hpy188III	TCNNGA	2 cut(s)	374, 569
Hpy8I	GTNNAC	2 cut(s)	144, 177
HpyAV	CCTTC	3 cut(s)	275, 517, 616
HpyCH4III	ACNGT	2 cut(s)	55, 192
HpyCH4V	TGCA	5 cut(s)	119, 287, 403, 455, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 356, 365
HpyF3I	CTNAG	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	377, 543, 584
KflI	GGGWCCC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	370, 529
LpnPI	CCDG	8 cut(s)	88, 109, 114, 171, 348, 408, 518, 543
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	4 cut(s)	49, 55, 337, 560
MalI	GATC	2 cut(s)	372, 531
MboI	GATC	2 cut(s)	370, 529
MboII	GAAGA	4 cut(s)	117, 389, 674, 677
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	4 cut(s)	105, 157, 292, 310
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	5 cut(s)	468, 474, 520, 565, 583
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	4 cut(s)	315, 417, 488, 684
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	96
Mva1269I	GAATGC	2 cut(s)	403, 550
MwoI	GCNNNNNNNGC	3 cut(s)	71, 356, 365
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	370, 529
NlaIII	CATG	3 cut(s)	377, 543, 584
NlaIV	GGNNCC	3 cut(s)	86, 87, 202
NmuCI	GTSAC	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	271
PagI	TCATGA	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PctI	GAATGC	2 cut(s)	403, 550
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	352
PpuMI	RGGWCCY	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	461
Psp5II	RGGWCCY	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	86, 87, 202
PspPI	GGNCC	2 cut(s)	85, 200
PspPPI	RGGWCCY	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	4 cut(s)	315, 417, 488, 684
Sau3AI	GATC	2 cut(s)	370, 529
Sau96I	GGNCC	2 cut(s)	85, 200
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	5 cut(s)	187, 286, 479, 499, 562
SfaNI	GCATC	1 cut(s)	89
SfuI	TTCGAA	1 cut(s)	271
SinI	GGWCC	2 cut(s)	85, 200
SmlI	CTYRAG	2 cut(s)	567, 587
SmoI	CTYRAG	2 cut(s)	567, 587
Sse9I	AATT	4 cut(s)	105, 157, 292, 310
SseBI	AGGCCT	1 cut(s)	74
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	1 cut(s)	498
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	55, 192
TaqI	TCGA	4 cut(s)	42, 271, 473, 479
TasI	AATT	4 cut(s)	105, 157, 292, 310
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	4 cut(s)	315, 417, 488, 684
Tru9I	TTAA	4 cut(s)	315, 417, 488, 684
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	5 cut(s)	60, 323, 390, 528, 528
TspRI	CASTG	1 cut(s)	342
VpaK11BI	GGWCC	2 cut(s)	85, 200
XapI	RAATTY	4 cut(s)	105, 157, 292, 310
XmiI	GTMKAC	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.