Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006835.1

Orthogroup ID

OG0003910

Physical Location & Seq

Genomic Coordinates Reverse (-)

53027 .. 54142

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006835.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgtatgctaagtttgagtccatggatgattctgtcaaggtttttgaggagttggacttcagagaaatcatatcatggaatgctttgatctcagggtatgctcagaacaggctgtgtcaggatgcactgaagacattcttgtctgcaatcatggagtccacgcctaacaactacacatttggtagtgtcttgagtgcaattggtgatgctcatgacatttctctgaagtatggccagcgatgccactcctttttgataaaacttggatcagtcactgacccgattacagcaggtgctctccttgatatgtatgcaaagcgaggaagcatttgcgagtcccaaagagttttcagtgagacccctcacagaactcagtttgcttggacagcaataatatctgcatatgctgggcatggagactatgactcagtaatcgaattgttctaccagatggataaagaaggggtgagacctgactcgatcacatttctttctgtactaagcgcatgtagcagaaagggatcagttgagatgggccgccatttctttgaatcaatggtcaaagactatcagattgaaccatctcctcaacattatgcttgtatggtggacatgttaggccgggcaggaaagctggaggaagcagaggaattgacgagtcagatgtcaggacagccgagtttttctttgttgcaaagcttgcttggggcttgcacaatacatgggaatgtggagatggctgagagagttgcagatgctttaatgcgaatggagccaactgaatcaggttcctatgtgctgttgtccaacttgtatgcagagaaaggggactgggaaatggtggcaaaaataaggaaacagatgagagataggggagtgagaaaggaagtgggatttagttggttggataatggtgatgctgatggttctttgtatctccacgggttttcgtcaggtgatacctctcaccgccagtctgaagagataagtagaatggcgaaatgcataggactagaaatgaagtttttgagagagaacatggctgagataggctcactgaaacaagacagtgagacacattctcaagtgcctcatgatgaagaaggcttgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

371

Amino Acids

41.56

Weight (kDa)

5.06

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32430 AT4G32430
fragaria_vesca	FvH4_1g03430
malus_domestica	MD15G1174400.v1.1
prunus_persica	Prupe.5G003100_v2.0.a1 Prupe.7G240400_v2.0.a1 Prupe.7G241500_v2.0.a1 Prupe.7G241700_v2.0.a1 Prupe.8G249000_v2.0.a1
pyrus_communis	pycom15g15600
rosa_chinensis	RchiOBHm_Chr2g0088661 RchiOBHm_Chr5g0002171
rosa_laevigata	RLG00000015973 RLG00000015974 RLG00000031004
rosa_multiflora	Rmu_sc0006835.1_g000012 Rmu_sc0006835.1_g000013 Rmu_sc0013155.1_g000001 Rmu_sc0015442.1_g000012 Rmu_sc0015442.1_g000013 Rmu_sc0024326.1_g000001 Rmu_sc0041985.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152420
rosa_rugosa	Rorug01G0485700
rosa_samantha	Rh2AG041200 Rh2BG039900 Rh2CG040700 Rh2DG040300 Rh5AG016800 Rh5AG016900 Rh5CG018300 Rh5CG018400 Rh5CG018500
rosa_wichuraiana	Rw2G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	281
AasI	GACNNNNNNGTC	1 cut(s)	139
Acc36I	ACCTGC	1 cut(s)	281
AciI	CCGC	2 cut(s)	538, 970
AclWI	GGATC	2 cut(s)	274, 529
AcoI	YGGCCR	1 cut(s)	232
AcuI	CTGAAG	4 cut(s)	43, 149, 245, 999
AfaI	GTAC	1 cut(s)	498
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	2 cut(s)	551, 578
AluBI	AGCT	2 cut(s)	634, 699
AluI	AGCT	2 cut(s)	634, 699
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	4 cut(s)	350, 411, 463, 1067
AlwI	GGATC	2 cut(s)	274, 529
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	3 cut(s)	232, 535, 619
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	535
AsuC2I	CCSGG	1 cut(s)	623
AsuHPI	GGTGA	5 cut(s)	215, 478, 926, 959, 968
BalI	TGGCCA	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	298
BccI	CCATC	5 cut(s)	445, 526, 589, 730, 917
BcnI	CCSGG	1 cut(s)	623
BcoDI	GTCTC	4 cut(s)	350, 411, 463, 1067
BfaI	CTAG	1 cut(s)	1013
BfuAI	ACCTGC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	538
BlsI	GCNGC	1 cut(s)	539
Bme1390I	CCNGG	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	535
BmiI	GGNNCC	2 cut(s)	774, 790
BmrFI	CCNGG	1 cut(s)	623
BmrI	ACTGGG	1 cut(s)	841
BmsI	GCATC	5 cut(s)	112, 196, 230, 745, 907
BmuI	ACTGGG	1 cut(s)	841
BpiI	GAAGAC	1 cut(s)	137
BplI	GAGNNNNNCTC	2 cut(s)	1037, 1069
BpmI	CTGGAG	1 cut(s)	656
BpuEI	CTTGAG	2 cut(s)	211, 1068
BpuMI	CCSGG	1 cut(s)	623
BsaI	GGTCTC	2 cut(s)	350, 463
BsaJI	CCNNGG	2 cut(s)	21, 940
Bse1I	ACTGG	2 cut(s)	836, 973
BseDI	CCNNGG	2 cut(s)	21, 940
BseGI	GGATG	2 cut(s)	31, 127
BseMII	CTCAG	6 cut(s)	105, 116, 386, 441, 732, 1035
BseNI	ACTGG	2 cut(s)	836, 973
BseRI	GAGGAG	2 cut(s)	62, 576
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	3 cut(s)	234, 537, 621
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	622
BslFI	GGGAC	2 cut(s)	322, 842
BsmAI	GTCTC	4 cut(s)	350, 411, 463, 1067
BsmFI	GGGAC	2 cut(s)	322, 842
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	234, 537, 621
Bso31I	GGTCTC	2 cut(s)	350, 463
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	87, 266, 480, 521
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	2 cut(s)	538, 970
BspANI	GGCC	3 cut(s)	234, 537, 621
BspCNI	CTCAG	6 cut(s)	104, 115, 385, 440, 733, 1036
BspHI	TCATGA	2 cut(s)	211, 1093
BspLI	GGNNCC	2 cut(s)	774, 790
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	2 cut(s)	274, 529
BspTNI	GGTCTC	2 cut(s)	350, 463
BsrI	ACTGG	2 cut(s)	836, 973
BssECI	CCNNGG	2 cut(s)	21, 940
BssMI	GATC	4 cut(s)	87, 266, 480, 521
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	1070
Bst6I	CTCTTC	1 cut(s)	975
BstAPI	GCANNNNNTGC	1 cut(s)	700
BstC8I	GCNNGC	3 cut(s)	236, 701, 712
BstDEI	CTNAG	8 cut(s)	9, 91, 102, 372, 427, 500, 741, 1044
BstDSI	CCRYGG	2 cut(s)	21, 940
BstF5I	GGATG	2 cut(s)	31, 127
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	4 cut(s)	90, 269, 483, 524
BstMAI	GTCTC	4 cut(s)	350, 411, 463, 1067
BstMBI	GATC	4 cut(s)	87, 266, 480, 521
BstMWI	GCNNNNNNNGC	5 cut(s)	240, 386, 510, 700, 772
BstNSI	RCATGY	2 cut(s)	510, 616
BstSCI	CCNGG	1 cut(s)	621
BstV2I	GAAGAC	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	234, 537, 621
BtgI	CCRYGG	2 cut(s)	21, 940
BtgZI	GCGATG	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	31, 127
BtsIMutI	CAGTG	5 cut(s)	125, 273, 358, 1055, 1075
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	3 cut(s)	236, 701, 712
CaiI	CAGNNNCTG	1 cut(s)	275
CciI	TCATGA	2 cut(s)	211, 1093
CfoI	GCGC	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	535
Csp6I	GTAC	1 cut(s)	497
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	8 cut(s)	9, 91, 102, 372, 427, 500, 741, 1044
DpnI	GATC	4 cut(s)	89, 268, 482, 523
DpnII	GATC	4 cut(s)	87, 266, 480, 521
DrdI	GACNNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	975
EarI	CTCTTC	1 cut(s)	975
Eco130I	CCWWGG	1 cut(s)	21
Eco31I	GGTCTC	2 cut(s)	350, 463
Eco57I	CTGAAG	4 cut(s)	43, 149, 245, 999
EcoT14I	CCWWGG	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	1007
ErhI	CCWWGG	1 cut(s)	21
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	2 cut(s)	322, 842
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	538
FokI	GGATG	2 cut(s)	38, 134
Fsp4HI	GCNGC	1 cut(s)	538
FspBI	CTAG	1 cut(s)	1013
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	1 cut(s)	538
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	3 cut(s)	234, 537, 621
HapII	CCGG	1 cut(s)	622
HhaI	GCGC	1 cut(s)	506
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	697
HinfI	GANTC	9 cut(s)	17, 29, 155, 335, 425, 476, 551, 658, 782
HpaII	CCGG	1 cut(s)	622
HphI	GGTGA	5 cut(s)	215, 478, 926, 959, 968
Hpy166II	GTNNAC	2 cut(s)	159, 610
Hpy188I	TCNGA	6 cut(s)	62, 105, 225, 573, 663, 979
Hpy188III	TCNNGA	5 cut(s)	119, 190, 212, 669, 1094
Hpy8I	GTNNAC	2 cut(s)	159, 610
HpyAV	CCTTC	2 cut(s)	455, 1097
HpyCH4III	ACNGT	1 cut(s)	1070
HpyF10VI	GCNNNNNNNGC	5 cut(s)	240, 386, 510, 700, 772
HpyF3I	CTNAG	8 cut(s)	9, 91, 102, 372, 427, 500, 741, 1044
HspAI	GCGC	1 cut(s)	504
Kzo9I	GATC	4 cut(s)	87, 266, 480, 521
LmnI	GCTCC	1 cut(s)	772
LweI	GCATC	5 cut(s)	112, 196, 230, 745, 907
MaeI	CTAG	1 cut(s)	1013
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	4 cut(s)	89, 268, 482, 523
MboI	GATC	4 cut(s)	87, 266, 480, 521
MboII	GAAGA	3 cut(s)	142, 992, 1112
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	3 cut(s)	198, 437, 650
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	6 cut(s)	26, 164, 344, 419, 470, 667
MmeI	TCCRAC	3 cut(s)	33, 831, 885
MnlI	CCTC	8 cut(s)	40, 314, 372, 597, 631, 640, 973, 1101
Mox20I	TGGCCA	1 cut(s)	234
Mph1103I	ATGCAT	1 cut(s)	1007
MroXI	GAANNNNTTC	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	1 cut(s)	761
MslI	CAYNNNNRTG	1 cut(s)	726
Msp20I	TGGCCA	1 cut(s)	234
MspI	CCGG	1 cut(s)	622
MspR9I	CCNGG	1 cut(s)	623
MunI	CAATTG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	85
MwoI	GCNNNNNNNGC	5 cut(s)	240, 386, 510, 700, 772
NciI	CCSGG	1 cut(s)	623
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	4 cut(s)	87, 266, 480, 521
NlaIV	GGNNCC	2 cut(s)	774, 790
NmeAIII	GCCGAG	1 cut(s)	702
NmuCI	GTSAC	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	1007
NspI	RCATGY	2 cut(s)	510, 616
PagI	TCATGA	2 cut(s)	211, 1093
PaqCI	CACCTGC	1 cut(s)	281
PciI	ACATGT	1 cut(s)	612
PctI	GAATGC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	3 cut(s)	29, 551, 782
PkrI	GCNGC	1 cut(s)	539
PleI	GAGTC	6 cut(s)	25, 163, 343, 419, 470, 666
PpsI	GAGTC	6 cut(s)	25, 163, 343, 419, 470, 666
PscI	ACATGT	1 cut(s)	612
PspFI	CCCAGC	1 cut(s)	407
PspN4I	GGNNCC	2 cut(s)	774, 790
PspPI	GGNCC	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
RseI	CAYNNNNRTG	1 cut(s)	726
SaqAI	TTAA	1 cut(s)	761
SatI	GCNGC	1 cut(s)	538
Sau3AI	GATC	4 cut(s)	87, 266, 480, 521
Sau96I	GGNCC	1 cut(s)	535
SchI	GAGTC	6 cut(s)	26, 164, 344, 419, 470, 667
ScrFI	CCNGG	1 cut(s)	623
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	8 cut(s)	42, 295, 475, 636, 701, 790, 958, 965
SfaNI	GCATC	5 cut(s)	112, 196, 230, 745, 907
SmiMI	CAYNNNNRTG	1 cut(s)	726
SmlI	CTYRAG	2 cut(s)	190, 1083
SmoI	CTYRAG	2 cut(s)	190, 1083
Sse9I	AATT	3 cut(s)	198, 437, 650
SsiI	CCGC	2 cut(s)	538, 970
SspMI	CTAG	1 cut(s)	1013
StyD4I	CCNGG	1 cut(s)	621
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	1070
TaqI	TCGA	2 cut(s)	435, 479
TasI	AATT	3 cut(s)	198, 437, 650
TatI	WGTACW	1 cut(s)	496
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	3 cut(s)	29, 551, 782
Tru1I	TTAA	1 cut(s)	761
Tru9I	TTAA	1 cut(s)	761
TscAI	CASTG	5 cut(s)	132, 280, 358, 1062, 1075
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	1034, 1113
TspRI	CASTG	5 cut(s)	132, 280, 358, 1062, 1075
XceI	RCATGY	2 cut(s)	510, 616
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	1 cut(s)	1013
Zsp2I	ATGCAT	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.