Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003910

Physical Location & Seq

Genomic Coordinates Forward (+)

1218939 .. 1219244

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG018300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGTATGTACACTAAAGCTGGGAGGTTTGATAGTGCAATGTGTATTTTTGATGGTATGTGTTATACTGATATAGTTTCTTGGAATACTATTCTTTCGGGGTTTCAAACGAGTGAGGGGGTGTTGAGTTTTGCTCCCAGGATGCATTCAAATGGGTTAGGTTTGGATCCGGTGACTTATTGTACAGTTCTTGCTTTTTGTGCGGAGTATGAAGATTTTCTGTTTGGGTTACAATTGCATTCTCTCATACTTAAGTCTGGGTTGGATCGTGAAGTTTTTGTTGGGAATGCGCTTATAAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

101

Amino Acids

11.19

Weight (kDa)

4.82

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32430 AT4G32430
fragaria_vesca	FvH4_1g03430
malus_domestica	MD15G1174400.v1.1
prunus_persica	Prupe.5G003100_v2.0.a1 Prupe.7G240400_v2.0.a1 Prupe.7G241500_v2.0.a1 Prupe.7G241700_v2.0.a1 Prupe.8G249000_v2.0.a1
pyrus_communis	pycom15g15600
rosa_chinensis	RchiOBHm_Chr2g0088661 RchiOBHm_Chr5g0002171
rosa_laevigata	RLG00000015973 RLG00000015974 RLG00000031004
rosa_multiflora	Rmu_sc0006835.1_g000012 Rmu_sc0006835.1_g000013 Rmu_sc0013155.1_g000001 Rmu_sc0015442.1_g000012 Rmu_sc0015442.1_g000013 Rmu_sc0024326.1_g000001 Rmu_sc0041985.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152420
rosa_rugosa	Rorug01G0485700
rosa_samantha	Rh2AG041200 Rh2BG039900 Rh2CG040700 Rh2DG040300 Rh5AG016800 Rh5AG016900 Rh5CG018300 Rh5CG018400 Rh5CG018500
rosa_wichuraiana	Rw2G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	296, 304
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	3 cut(s)	161, 174, 273
AfaI	GTAC	2 cut(s)	11, 184
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	107, 150
AjnI	CCWGG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
AlwI	GGATC	3 cut(s)	161, 174, 273
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	166
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	139
BfrI	CTTAAG	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	118, 150
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	45
BseYI	CCCAGC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	170
BsmI	GAATGC	3 cut(s)	145, 238, 292
Bsp1407I	TGTACA	2 cut(s)	9, 182
Bsp143I	GATC	2 cut(s)	166, 265
BspACI	CCGC	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	3 cut(s)	161, 174, 273
BspTI	CTTAAG	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	45
BsrGI	TGTACA	2 cut(s)	9, 182
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	2 cut(s)	166, 265
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	187
BstAFI	CTTAAG	1 cut(s)	251
BstAUI	TGTACA	2 cut(s)	9, 182
BstF5I	GGATG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	2 cut(s)	169, 268
BstMBI	GATC	2 cut(s)	166, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	10, 183
CviJI	RGCY	1 cut(s)	20
CviKI_1	RGCY	1 cut(s)	20
CviQI	GTAC	2 cut(s)	10, 183
DpnI	GATC	2 cut(s)	168, 267
DpnII	GATC	2 cut(s)	166, 265
EcoRII	CCWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	147
FaiI	YATR	8 cut(s)	8, 59, 66, 74, 210, 248, 296, 304
FokI	GGATG	1 cut(s)	154
GlaI	GCGC	1 cut(s)	291
GsaI	CCCAGC	1 cut(s)	24
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	12
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	38, 145, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HspAI	GCGC	1 cut(s)	290
Kzo9I	GATC	2 cut(s)	166, 265
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	5 cut(s)	6, 124, 151, 183, 243
LweI	GCATC	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	172, 228
MalI	GATC	2 cut(s)	168, 267
MboI	GATC	2 cut(s)	166, 265
MboII	GAAGA	1 cut(s)	224
MfeI	CAATTG	1 cut(s)	233
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	2 cut(s)	18, 109
Mph1103I	ATGCAT	1 cut(s)	147
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	150
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	233
Mva1269I	GAATGC	3 cut(s)	145, 238, 292
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	2 cut(s)	166, 265
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	147
PctI	GAATGC	3 cut(s)	145, 238, 292
PdmI	GAANNNNTTC	1 cut(s)	216
PsiI	TTATAA	2 cut(s)	296, 304
Psp6I	CCWGG	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	2 cut(s)	11, 184
RsaNI	GTAC	2 cut(s)	10, 183
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	252
Sau3AI	GATC	2 cut(s)	166, 265
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	3 cut(s)	22, 29, 163
SfaNI	GCATC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	187
TasI	AATT	1 cut(s)	233
TatI	WGTACW	2 cut(s)	9, 182
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	225
Vha464I	CTTAAG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.