Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041985.1

Orthogroup ID

OG0003910

Physical Location & Seq

Genomic Coordinates Forward (+)

430 .. 1692

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041985.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

atggagtatccaaatgatgttacatttgttggactaatcgatgctatatcaactaggaagttggtggaagaaggccttatgattcatgggttttgcacaaagactggatttttgtcaaagcataatgtttgcaatagctttatcaccatgtatgctaagtttgagtccatggatgattctgtcaaggtttttgaggagttggacttcagagaaatcatttcatggaatgctttgatctcagggtatgctcagaatgggctgtgtcaggatgcactgaagacattcttgtctgcaatcatggagtccacgcctaacaactacacatttggtagtgtcttgagtgcaattggtgatgctcatgacatttctctgaagtatggccagcgatgcctctccttttttataaaacttggatcagtcactgactcgattacagcaggtgctctccttgatatgtatgcaaagcgaggaagcatttgcgagtcccaaagagttttcagtgagacccctcacagaactcagtttgcttggacagcaataatatcggcatatgctgggcatggagactatgactcagtaatcgaattgttctaccagatggataaagaaggggtgagacctgactcgatcacatttctttctgtactaagcgcatgtagcagaaagggatcagttgagatgggccaccatttctttgaatcaatggtcaaagactatcagattgaatcatctcctcaacattatgcttgtatggtggacatgttaggccgggcaggaaagctggaggaaccagaggaattgacgagtcagatgtcaggacagccgagtttttctttgttgcaaagcttgcttggggcttgcacgatacatgggaatgtggagatggctgagagagttgcagatgctttaatgcgaatggagccaactgaatcaggttcctatgtgctgttgtccaacttgtatgcagagaaaggggactgggaaatggtggcaaaaacaaggaaacagatgagagttaggggagtgagaaaggaagtgggatttagctggttggataatggtgatgctgatggttctttgtatctccacgggttttcgtcaggtgatacctctcaccgccagtctgaagagataagtagaatggcgaaatgcataggactagaaatgaagtttttgagagagaacatggctgagatagactcactgaaacaagacagtgagacacattctcaagtgcctcatgatgaagaaggcttgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

420

Amino Acids

46.94

Weight (kDa)

5.04

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32430 AT4G32430
fragaria_vesca	FvH4_1g03430
malus_domestica	MD15G1174400.v1.1
prunus_persica	Prupe.5G003100_v2.0.a1 Prupe.7G240400_v2.0.a1 Prupe.7G241500_v2.0.a1 Prupe.7G241700_v2.0.a1 Prupe.8G249000_v2.0.a1
pyrus_communis	pycom15g15600
rosa_chinensis	RchiOBHm_Chr2g0088661 RchiOBHm_Chr5g0002171
rosa_laevigata	RLG00000015973 RLG00000015974 RLG00000031004
rosa_multiflora	Rmu_sc0006835.1_g000012 Rmu_sc0006835.1_g000013 Rmu_sc0013155.1_g000001 Rmu_sc0015442.1_g000012 Rmu_sc0015442.1_g000013 Rmu_sc0024326.1_g000001 Rmu_sc0041985.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152420
rosa_rugosa	Rorug01G0485700
rosa_samantha	Rh2AG041200 Rh2BG039900 Rh2CG040700 Rh2DG040300 Rh5AG016800 Rh5AG016900 Rh5CG018300 Rh5CG018400 Rh5CG018500
rosa_wichuraiana	Rw2G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	404
AarI	CACCTGC	1 cut(s)	428
AasI	GACNNNNNNGTC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	428
AciI	CCGC	1 cut(s)	1117
AclWI	GGATC	2 cut(s)	421, 676
AcoI	YGGCCR	1 cut(s)	379
AcuI	CTGAAG	4 cut(s)	190, 296, 392, 1146
AfaI	GTAC	1 cut(s)	645
AflIII	ACRYGT	1 cut(s)	759
AgsI	TTSAA	2 cut(s)	698, 725
AluBI	AGCT	4 cut(s)	138, 781, 846, 1047
AluI	AGCT	4 cut(s)	138, 781, 846, 1047
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	4 cut(s)	497, 558, 610, 1214
AlwI	GGATC	2 cut(s)	421, 676
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	4 cut(s)	73, 379, 682, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	682
AsuC2I	CCSGG	1 cut(s)	770
AsuHPI	GGTGA	6 cut(s)	136, 362, 625, 1073, 1106, 1115
BalI	TGGCCA	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	445
BccI	CCATC	4 cut(s)	592, 673, 877, 1064
BcgI	CGANNNNNNTGC	2 cut(s)	525, 559
BciVI	GTATCC	1 cut(s)	18
BcnI	CCSGG	1 cut(s)	770
BcoDI	GTCTC	4 cut(s)	497, 558, 610, 1214
BfaI	CTAG	2 cut(s)	54, 1160
BfuAI	ACCTGC	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	770
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	3 cut(s)	789, 921, 937
BmrFI	CCNGG	1 cut(s)	770
BmrI	ACTGGG	1 cut(s)	988
BmsI	GCATC	6 cut(s)	31, 259, 343, 377, 892, 1054
BmuI	ACTGGG	1 cut(s)	988
BpiI	GAAGAC	1 cut(s)	284
BplI	GAGNNNNNCTC	2 cut(s)	1184, 1216
BpmI	CTGGAG	1 cut(s)	803
BpuEI	CTTGAG	2 cut(s)	358, 1215
BpuMI	CCSGG	1 cut(s)	770
Bsa29I	ATCGAT	1 cut(s)	39
BsaI	GGTCTC	2 cut(s)	497, 610
BsaJI	CCNNGG	2 cut(s)	168, 1087
Bse1I	ACTGG	3 cut(s)	109, 983, 1120
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	168, 1087
BseGI	GGATG	2 cut(s)	178, 274
BseMII	CTCAG	6 cut(s)	252, 263, 533, 588, 879, 1182
BseNI	ACTGG	3 cut(s)	109, 983, 1120
BseRI	GAGGAG	2 cut(s)	209, 723
BseYI	CCCAGC	1 cut(s)	554
BshFI	GGCC	4 cut(s)	75, 381, 684, 768
BshVI	ATCGAT	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	769
BslFI	GGGAC	2 cut(s)	469, 989
BsmAI	GTCTC	4 cut(s)	497, 558, 610, 1214
BsmFI	GGGAC	2 cut(s)	469, 989
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	4 cut(s)	75, 381, 684, 768
Bso31I	GGTCTC	2 cut(s)	497, 610
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	4 cut(s)	234, 413, 627, 668
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	1 cut(s)	1117
BspANI	GGCC	4 cut(s)	75, 381, 684, 768
BspCNI	CTCAG	6 cut(s)	251, 262, 532, 587, 880, 1183
BspDI	ATCGAT	1 cut(s)	39
BspHI	TCATGA	2 cut(s)	358, 1240
BspLI	GGNNCC	3 cut(s)	789, 921, 937
BspMI	ACCTGC	1 cut(s)	428
BspPI	GGATC	2 cut(s)	421, 676
BspTNI	GGTCTC	2 cut(s)	497, 610
BsrI	ACTGG	3 cut(s)	109, 983, 1120
BssECI	CCNNGG	2 cut(s)	168, 1087
BssMI	GATC	4 cut(s)	234, 413, 627, 668
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	1217
Bst6I	CTCTTC	1 cut(s)	1122
BstAPI	GCANNNNNTGC	1 cut(s)	847
BstC8I	GCNNGC	3 cut(s)	383, 848, 859
BstDEI	CTNAG	8 cut(s)	156, 238, 249, 519, 574, 647, 888, 1191
BstDSI	CCRYGG	2 cut(s)	168, 1087
BstF5I	GGATG	2 cut(s)	178, 274
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	4 cut(s)	237, 416, 630, 671
BstMAI	GTCTC	4 cut(s)	497, 558, 610, 1214
BstMBI	GATC	4 cut(s)	234, 413, 627, 668
BstMWI	GCNNNNNNNGC	5 cut(s)	387, 533, 657, 847, 919
BstNSI	RCATGY	2 cut(s)	657, 763
BstSCI	CCNGG	1 cut(s)	768
BstV2I	GAAGAC	1 cut(s)	284
Bsu15I	ATCGAT	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	75, 381, 684, 768
BsuTUI	ATCGAT	1 cut(s)	39
BtgI	CCRYGG	2 cut(s)	168, 1087
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	178, 274
BtsIMutI	CAGTG	5 cut(s)	272, 420, 505, 1202, 1222
BveI	ACCTGC	1 cut(s)	428
Cac8I	GCNNGC	3 cut(s)	383, 848, 859
CaiI	CAGNNNCTG	1 cut(s)	422
CciI	TCATGA	2 cut(s)	358, 1240
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	1 cut(s)	682
ClaI	ATCGAT	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	644
CviQI	GTAC	1 cut(s)	644
DdeI	CTNAG	8 cut(s)	156, 238, 249, 519, 574, 647, 888, 1191
DpnI	GATC	4 cut(s)	236, 415, 629, 670
DpnII	GATC	4 cut(s)	234, 413, 627, 668
DrdI	GACNNNNNNGTC	1 cut(s)	286
DseDI	GACNNNNNNGTC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	1122
EarI	CTCTTC	1 cut(s)	1122
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	75
Eco31I	GGTCTC	2 cut(s)	497, 610
Eco57I	CTGAAG	4 cut(s)	190, 296, 392, 1146
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	1154
ErhI	CCWWGG	1 cut(s)	168
FalI	AAGNNNNNCTT	4 cut(s)	60, 92, 269, 301
FaqI	GGGAC	2 cut(s)	469, 989
FauNDI	CATATG	1 cut(s)	550
FokI	GGATG	2 cut(s)	185, 281
FspBI	CTAG	2 cut(s)	54, 1160
GlaI	GCGC	1 cut(s)	652
GsaI	CCCAGC	1 cut(s)	558
GsuI	CTGGAG	1 cut(s)	803
HaeIII	GGCC	4 cut(s)	75, 381, 684, 768
HapII	CCGG	1 cut(s)	769
HhaI	GCGC	1 cut(s)	653
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HindIII	AAGCTT	1 cut(s)	844
HpaII	CCGG	1 cut(s)	769
HphI	GGTGA	6 cut(s)	136, 362, 625, 1073, 1106, 1115
Hpy166II	GTNNAC	2 cut(s)	306, 757
Hpy188I	TCNGA	6 cut(s)	209, 252, 372, 720, 810, 1126
Hpy188III	TCNNGA	5 cut(s)	266, 337, 359, 816, 1241
Hpy8I	GTNNAC	2 cut(s)	306, 757
HpyAV	CCTTC	3 cut(s)	65, 602, 1244
HpyCH4III	ACNGT	1 cut(s)	1217
HpyF10VI	GCNNNNNNNGC	5 cut(s)	387, 533, 657, 847, 919
HpyF3I	CTNAG	8 cut(s)	156, 238, 249, 519, 574, 647, 888, 1191
HspAI	GCGC	1 cut(s)	651
Kzo9I	GATC	4 cut(s)	234, 413, 627, 668
LmnI	GCTCC	1 cut(s)	919
LweI	GCATC	6 cut(s)	31, 259, 343, 377, 892, 1054
MaeI	CTAG	2 cut(s)	54, 1160
MaeIII	GTNAC	2 cut(s)	19, 418
MalI	GATC	4 cut(s)	236, 415, 629, 670
MboI	GATC	4 cut(s)	234, 413, 627, 668
MboII	GAAGA	4 cut(s)	80, 289, 1139, 1259
MfeI	CAATTG	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	3 cut(s)	345, 584, 797
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	8 cut(s)	173, 311, 419, 491, 566, 617, 814, 1193
MmeI	TCCRAC	4 cut(s)	10, 180, 978, 1032
MnlI	CCTC	9 cut(s)	187, 401, 461, 519, 744, 778, 787, 1120, 1248
Mox20I	TGGCCA	1 cut(s)	381
Mph1103I	ATGCAT	1 cut(s)	1154
MroXI	GAANNNNTTC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	1 cut(s)	908
MslI	CAYNNNNRTG	1 cut(s)	873
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	1 cut(s)	769
MspR9I	CCNGG	1 cut(s)	770
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	232
MwoI	GCNNNNNNNGC	5 cut(s)	387, 533, 657, 847, 919
NciI	CCSGG	1 cut(s)	770
NcoI	CCATGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	4 cut(s)	234, 413, 627, 668
NlaIV	GGNNCC	3 cut(s)	789, 921, 937
NmeAIII	GCCGAG	1 cut(s)	849
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	1 cut(s)	1154
NspI	RCATGY	2 cut(s)	657, 763
PagI	TCATGA	2 cut(s)	358, 1240
PaqCI	CACCTGC	1 cut(s)	428
PceI	AGGCCT	1 cut(s)	75
PciI	ACATGT	1 cut(s)	759
PctI	GAATGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	5 cut(s)	82, 176, 698, 725, 929
PleI	GAGTC	8 cut(s)	172, 310, 419, 490, 566, 617, 813, 1193
PpsI	GAGTC	8 cut(s)	172, 310, 419, 490, 566, 617, 813, 1193
PscI	ACATGT	1 cut(s)	759
PsiI	TTATAA	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	554
PspN4I	GGNNCC	3 cut(s)	789, 921, 937
PspPI	GGNCC	1 cut(s)	682
PstNI	CAGNNNCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	645
RsaNI	GTAC	1 cut(s)	644
RseI	CAYNNNNRTG	1 cut(s)	873
SaqAI	TTAA	1 cut(s)	908
Sau3AI	GATC	4 cut(s)	234, 413, 627, 668
Sau96I	GGNCC	1 cut(s)	682
SchI	GAGTC	8 cut(s)	173, 311, 419, 491, 566, 617, 814, 1193
ScrFI	CCNGG	1 cut(s)	770
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	6 cut(s)	31, 259, 343, 377, 892, 1054
SmiMI	CAYNNNNRTG	1 cut(s)	873
SmlI	CTYRAG	2 cut(s)	337, 1230
SmoI	CTYRAG	2 cut(s)	337, 1230
Sse9I	AATT	3 cut(s)	345, 584, 797
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	1 cut(s)	1117
SspMI	CTAG	2 cut(s)	54, 1160
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	768
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	1217
TaqI	TCGA	4 cut(s)	39, 428, 582, 626
TasI	AATT	3 cut(s)	345, 584, 797
TatI	WGTACW	1 cut(s)	643
TfiI	GAWTC	5 cut(s)	82, 176, 698, 725, 929
Tru1I	TTAA	1 cut(s)	908
Tru9I	TTAA	1 cut(s)	908
TscAI	CASTG	5 cut(s)	279, 427, 505, 1209, 1222
TseFI	GTSAC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	4 cut(s)	74, 210, 1181, 1260
TspRI	CASTG	5 cut(s)	279, 427, 505, 1209, 1222
XceI	RCATGY	2 cut(s)	657, 763
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	2 cut(s)	54, 1160
Zsp2I	ATGCAT	1 cut(s)	1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.