Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003910

Physical Location & Seq

Genomic Coordinates Forward (+)

10884116 .. 10886732

Gene Structure 2617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2484 bp

ATGTCCATAGATTGTCGGATCATTATTCATCTTGGATTAGGGCTTGAATGGTTATTGGCGTGGGCAAGATCTGCCCTCTGTTCTCTGCCAAATGCTAGTTTCCGATTACAATCGGCGGTTTGTCAGTTTCCCATGATTACCCGCCAACTGAATTTCAAAGCCCTCCATCGAATACCTAACCAACGGTTTGCGACATGCTCTAACTTCCACTCATTCAAACATGAGCACCAACTGTTCGACCAAAATCCCCAACCAAACGCAGCAGCATCGGCTAACCACGCTATGCTCAACAACTTACACAGAAACCTTCCACGTCGAGCCCTCGGCGTCTTCAGAGAGCAGGTTCAGTTATGTTCGTCACAGAATATCGATGAAGTTACCCTTACCCTTGCTGTCAAGGCTTGTCAAGGGGACCTCAAACCCGGGTGCGAAATTCACGGGTTTGCGGTTTCTTCTGGGTTTGCTTCTTATGTTACGGTTTTGAATTCCTTGATGAGTATGTACACTAAAGCTGGAGAGTTTGATAGTGCGTTATTTATCTTTGAGAGGATGTGTTATAAGGATATAGTTTCTTGGAATACAATTCTTTCGGGGTTCAGGTCGAGTGAGGGTGCATTGAGTTTTGCTCTTAGGATGAACTTGAATGGAGTTGTTTTTGATCCGGTGACTTATACAACCGTACTTTCCTTTTGTGCGGAGCATGAGGACTTTCTGTTTGGATGGCAGCTTCATTCTCTCATATTTAAGTCTGGTTTGGATTGTGAAGTTTTTGTTGGGAATGCACTCATAAGTATGTATTCAAGGCAGAGACATCTAACAGAAGCTAGGAGCGTGTTTGATGAAATGCGGAATAAGGATCTGGTTTCATGGAATGCAATACTATCAGGTTATTCACAAGAGGGAAATCACGGGCTTGAAGCGGTTTTGGCCTTTATTGAGATGATGAGAGAAGGGGTGGAGTTAGATCATGTCTCATTTACTAGTGCAGTTTCAGCTTGCGGTCATGAACAGAGTTTAGGACTCGGGAAACAAATACATGGCGTGACTATAAAATCAGGATACGGAAAGCATGTTTCAGTTTGTAATGTATTGATCTCGACATATTCGAAGTGTGAGGATACTGAAGATGCAAAATTGGTGTTTCAGTACACAAACGATCGCAATGTAGTTTCTTGGACGACTATGATTTCTATAGACGAAGAAGATGCCATCTCTCTGTTTAACGAAATGAGACTGGATGGAGTATATCCAAATGATGTTACATATGTTGGGCTAATCCATGCTGTAACGATTGGGAAGAAGGTGGAAGAAGGCCGAATGATTCACGGATTTTGCATAAAGACTGGATTTTTGTCTAAGGATAATGTTTGCAACAGCTTTATCACAATGTATGCTAAGTTTGAGTCCATGCAGGACTCCATCAAAGTTTTCGAGGAGTTGGAATGCAGAGAAATCATATCGTGGAACGCTTTGATTTCAGGGTATGCTCAGAACGGGCTGTGCCAGGATGCTCTCAAAACATTCTTGGTAGCAACTATGGAGGCGACGCCAAACAATTACACATTTGGCAGTGTCTTGAGCGCAATCGGCGATGCTCACGATATATCTCTGAAGTATGGCCAACGATGCCACTCATTTTTAATCAAACTTGGATCAGTGACTGACCCGATCATCGCAGGTGCTCTTCTTGACATGTATGCAAAGCGAGGAAGTATTAGTGAGTCCGAAAGAGTTTTCAGCGAAACGCCTCACAAAAGTCAGTTTGCTTGGACTGCAATAATATCTGCATATGCTACGCATGGAGACTGTGACTCAGTAATAGAATTGTTCGAGGAGATGGTAAGAGAAGGGGTGAAACCCGATTCAATCACGTTTCTTTCTGTACTAGCTGCCTGCAGCAGAAAGGGAATGGTTGAGACCGGGCGTCATCTCTTTCACTCAATGATCAAAGACTATCAGATTGAGCCATCTCCTCAGCATTATTCAAGCATGGTGGACATGTTGGGGCGGGCAGGGAAACTGGAGGAAGCGGAGGAGTTGATCAGTCAGATGCCAGGACAGCCAGGGTTTTCACTGCTGCAAAGCCTGCTCGGGGCATGCAGGATACACGGGAATGTGGAGATGGGTGAGAGAGTATCCAGCGCGCTGATGGGATTGGAACCGACGGAGTCAGGTGCTTACGTGCAGATGTCAAACTTGTATGCTGAGAAAGGGGACTGGGAAATGGTGGCGAAAGTACGGAAAGGGATGAGAGATAGGGGAGTGAGAAAGGAAGTTGGGTTTAGCTGGGTGGACACTGGTGGTGGTGATGCTGCTGATGGTTCCTTGTCTTTGCATCCGTTTTCATCGGGCGATACGTCTCACCCGCTTTCCGAAGAGATTTGGAGAATGGCGAAATGCTTAGGATTGGAGATGAAAGTTTTGAGGGAGAATGTGTGGGAGATGAACTCACTGACTGTGAGGGCTTTGAATATGTACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000960 GO:0000962 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016070 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1903311 GO:1903313 GO:1905637 GO:1905639

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

828

Amino Acids

92.05

Weight (kDa)

5.71

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	286 - 333	1.3e-06	PPR repeat family
PPR_2	PF13041	388 - 428	3.3e-06	PPR repeat family
PPR_2	PF13041	586 - 633	8.3e-11	PPR repeat family
PPR	PF01535	589 - 618	5.3e-07	PPR repeat
E_motif	PF20431	703 - 765	7.1e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32430 AT4G32430
fragaria_vesca	FvH4_1g03430
malus_domestica	MD15G1174400.v1.1
prunus_persica	Prupe.5G003100_v2.0.a1 Prupe.7G240400_v2.0.a1 Prupe.7G241500_v2.0.a1 Prupe.7G241700_v2.0.a1 Prupe.8G249000_v2.0.a1
pyrus_communis	pycom15g15600
rosa_chinensis	RchiOBHm_Chr2g0088661 RchiOBHm_Chr5g0002171
rosa_laevigata	RLG00000015973 RLG00000015974 RLG00000031004
rosa_multiflora	Rmu_sc0006835.1_g000012 Rmu_sc0006835.1_g000013 Rmu_sc0013155.1_g000001 Rmu_sc0015442.1_g000012 Rmu_sc0015442.1_g000013 Rmu_sc0024326.1_g000001 Rmu_sc0041985.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152420
rosa_rugosa	Rorug01G0485700
rosa_samantha	Rh2AG041200 Rh2BG039900 Rh2CG040700 Rh2DG040300 Rh5AG016800 Rh5AG016900 Rh5CG018300 Rh5CG018400 Rh5CG018500
rosa_wichuraiana	Rw2G003320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AarI	CACCTGC	1 cut(s)	1667
Acc36I	ACCTGC	2 cut(s)	331, 1667
AccII	CGCG	1 cut(s)	2144
AclWI	GGATC	4 cut(s)	26, 653, 864, 1660
AcoI	YGGCCR	1 cut(s)	1618
AcsI	RAATTY	3 cut(s)	151, 432, 484
AcuI	CTGAAG	3 cut(s)	316, 1143, 1631
AcyI	GRCGYC	3 cut(s)	327, 1547, 1924
AfaI	GTAC	6 cut(s)	503, 681, 1148, 1884, 2238, 2477
AfiI	CCNNNNNNNGG	1 cut(s)	2092
AflIII	ACRYGT	3 cut(s)	1692, 1998, 2478
AhdI	GACNNNNNGTC	1 cut(s)	1923
AhlI	ACTAGT	1 cut(s)	980
AjiI	CACGTC	1 cut(s)	314
AjnI	CCWGG	3 cut(s)	1503, 2053, 2062
AjuI	GAANNNNNNNTTGG	2 cut(s)	756, 788
AluBI	AGCT	7 cut(s)	512, 727, 824, 995, 1377, 1889, 2286
AluI	AGCT	7 cut(s)	512, 727, 824, 995, 1377, 1889, 2286
Alw21I	GWGCWC	2 cut(s)	228, 1684
Alw26I	GTCTC	6 cut(s)	802, 976, 1225, 1797, 1910, 2364
AlwI	GGATC	4 cut(s)	26, 653, 864, 1660
AlwNI	CAGNNNCTG	1 cut(s)	1661
Ama87I	CYCGRG	3 cut(s)	422, 1022, 2090
AoxI	GGCC	3 cut(s)	927, 1312, 1618
ApeKI	GCWGC	7 cut(s)	260, 263, 724, 1889, 1896, 2077, 2312
ApoI	RAATTY	3 cut(s)	151, 432, 484
ArsI	GACNNNNNNTTYG	4 cut(s)	698, 730, 1333, 1365
AspLEI	GCGC	3 cut(s)	1583, 2144, 2146
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	3 cut(s)	423, 424, 1921
AsuHPI	GGTGA	5 cut(s)	676, 1864, 2138, 2318, 2354
AsuII	TTCGAA	1 cut(s)	1106
AvaI	CYCGRG	3 cut(s)	422, 1022, 2090
AvaII	GGWCC	1 cut(s)	412
BalI	TGGCCA	1 cut(s)	1620
BanII	GRGCYC	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	322
Bbv12I	GWGCWC	2 cut(s)	228, 1684
BbvCI	CCTCAGC	1 cut(s)	1974
BbvI	GCAGC	7 cut(s)	272, 275, 736, 1876, 1908, 2064, 2299
BcgI	CGANNNNNNTGC	4 cut(s)	249, 283, 1187, 1221
BciT130I	CCWGG	3 cut(s)	1505, 2055, 2064
BciVI	GTATCC	4 cut(s)	1052, 1111, 2097, 2146
BclI	TGATCA	2 cut(s)	1944, 2040
BcnI	CCSGG	3 cut(s)	423, 424, 1921
BcoDI	GTCTC	6 cut(s)	802, 976, 1225, 1797, 1910, 2364
BcuI	ACTAGT	1 cut(s)	980
BfaI	CTAG	4 cut(s)	96, 825, 981, 1886
BfmI	CTRYAG	2 cut(s)	1191, 1894
BfuAI	ACCTGC	2 cut(s)	331, 1667
BfuI	GTATCC	4 cut(s)	1052, 1111, 2097, 2146
BglII	AGATCT	1 cut(s)	68
BisI	GCNGC	7 cut(s)	261, 264, 725, 1890, 1897, 2078, 2313
BlsI	GCNGC	7 cut(s)	262, 265, 726, 1891, 1898, 2079, 2314
Bme1390I	CCNGG	6 cut(s)	423, 424, 1505, 1921, 2055, 2064
Bme18I	GGWCC	1 cut(s)	412
BmeRI	GACNNNNNGTC	1 cut(s)	1923
BmeT110I	CYCGRG	3 cut(s)	422, 1022, 2090
BmgBI	CACGTC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	3 cut(s)	413, 2160, 2323
BmrFI	CCNGG	6 cut(s)	423, 424, 1505, 1921, 2055, 2064
BmrI	ACTGGG	1 cut(s)	2227
BmsI	GCATC	9 cut(s)	275, 1117, 1195, 1498, 1582, 1616, 2040, 2299, 2344
BmuI	ACTGGG	1 cut(s)	2227
BpiI	GAAGAC	1 cut(s)	322
BplI	GAGNNNNNCTC	4 cut(s)	610, 642, 2432, 2464
BpmI	CTGGAG	2 cut(s)	534, 2042
Bpu10I	CCTNAGC	2 cut(s)	1974, 2401
Bpu14I	TTCGAA	1 cut(s)	1106
BpuEI	CTTGAG	1 cut(s)	1597
BpuMI	CCSGG	3 cut(s)	423, 424, 1921
Bsa29I	ATCGAT	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	2182
BsaBI	GATNNNNATC	1 cut(s)	109
BsaHI	GRCGYC	3 cut(s)	327, 1547, 1924
BsaI	GGTCTC	1 cut(s)	1910
BsaJI	CCNNGG	3 cut(s)	322, 422, 2063
BsaWI	WCCGGW	1 cut(s)	661
BsaXI	ACNNNNNCTCC	2 cut(s)	2420, 2450
Bsc4I	CCNNNNNNNGG	1 cut(s)	2092
Bse1I	ACTGG	5 cut(s)	1239, 1348, 2025, 2222, 2302
Bse3DI	GCAATG	1 cut(s)	1168
Bse8I	GATNNNNATC	1 cut(s)	109
BseBI	CCWGG	3 cut(s)	1505, 2055, 2064
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	3 cut(s)	322, 422, 2063
BseGI	GGATG	7 cut(s)	555, 639, 725, 1243, 1513, 2253, 2335
BseJI	GATNNNNATC	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	2092
BseMI	GCAATG	1 cut(s)	1168
BseMII	CTCAG	4 cut(s)	1502, 1827, 1988, 2196
BseNI	ACTGG	5 cut(s)	1239, 1348, 2025, 2222, 2302
BsePI	GCGCGC	1 cut(s)	2142
BseRI	GAGGAG	4 cut(s)	1448, 1847, 1962, 2048
BseXI	GCAGC	7 cut(s)	272, 275, 736, 1876, 1908, 2064, 2299
BseYI	CCCAGC	1 cut(s)	2286
BsgI	GTGCAG	2 cut(s)	1005, 2204
Bsh1236I	CGCG	1 cut(s)	2144
Bsh1285I	CGRYCG	1 cut(s)	1159
BshFI	GGCC	3 cut(s)	929, 1314, 1620
BshVI	ATCGAT	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	1159
BsiHKAI	GWGCWC	2 cut(s)	228, 1684
BsiHKCI	CYCGRG	3 cut(s)	422, 1022, 2090
BsiSI	CCGG	3 cut(s)	423, 662, 1920
BslFI	GGGAC	2 cut(s)	425, 2228
BslI	CCNNNNNNNGG	1 cut(s)	2092
BsmAI	GTCTC	6 cut(s)	802, 976, 1225, 1797, 1910, 2364
BsmBI	CGTCTC	1 cut(s)	2364
BsmFI	GGGAC	2 cut(s)	425, 2228
BsmI	GAATGC	3 cut(s)	784, 877, 1448
BsnI	GGCC	3 cut(s)	929, 1314, 1620
Bso31I	GGTCTC	1 cut(s)	1910
BsoBI	CYCGRG	3 cut(s)	422, 1022, 2090
Bsp119I	TTCGAA	1 cut(s)	1106
Bsp1286I	GDGCHC	3 cut(s)	228, 322, 1684
Bsp1407I	TGTACA	2 cut(s)	501, 2475
BspANI	GGCC	3 cut(s)	929, 1314, 1620
BspCNI	CTCAG	4 cut(s)	1501, 1826, 1987, 2197
BspDI	ATCGAT	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	2144
BspHI	TCATGA	1 cut(s)	1003
BspLI	GGNNCC	3 cut(s)	413, 2160, 2323
BspMAI	CTGCAG	1 cut(s)	1898
BspMI	ACCTGC	2 cut(s)	331, 1667
BspPI	GGATC	4 cut(s)	26, 653, 864, 1660
BspQI	GCTCTTC	1 cut(s)	1689
BspT104I	TTCGAA	1 cut(s)	1106
BspTNI	GGTCTC	1 cut(s)	1910
BsrDI	GCAATG	1 cut(s)	1168
BsrGI	TGTACA	2 cut(s)	501, 2475
BsrI	ACTGG	5 cut(s)	1239, 1348, 2025, 2222, 2302
BssECI	CCNNGG	3 cut(s)	322, 422, 2063
BssHII	GCGCGC	1 cut(s)	2142
BssNI	GRCGYC	3 cut(s)	327, 1547, 1924
Bst2UI	CCWGG	3 cut(s)	1505, 2055, 2064
Bst4CI	ACNGT	6 cut(s)	186, 234, 478, 679, 1808, 2458
Bst6I	CTCTTC	2 cut(s)	1689, 2370
BstACI	GRCGYC	3 cut(s)	327, 1547, 1924
BstAPI	GCANNNNNTGC	2 cut(s)	71, 2086
BstAUI	TGTACA	2 cut(s)	501, 2475
BstBAI	YACGTR	1 cut(s)	2182
BstBI	TTCGAA	1 cut(s)	1106
BstC8I	GCNNGC	6 cut(s)	997, 1894, 2010, 2087, 2098, 2144
BstDEI	CTNAG	8 cut(s)	629, 1356, 1395, 1488, 1813, 1974, 2205, 2401
BstF5I	GGATG	7 cut(s)	555, 639, 725, 1243, 1513, 2253, 2335
BstFNI	CGCG	1 cut(s)	2144
BstHHI	GCGC	3 cut(s)	1583, 2144, 2146
BstMAI	GTCTC	6 cut(s)	802, 976, 1225, 1797, 1910, 2364
BstMCI	CGRYCG	1 cut(s)	1159
BstNI	CCWGG	3 cut(s)	1505, 2055, 2064
BstNSI	RCATGY	6 cut(s)	198, 1073, 1696, 2002, 2100, 2482
BstSCI	CCNGG	6 cut(s)	421, 422, 1503, 1919, 2053, 2062
BstSFI	CTRYAG	2 cut(s)	1191, 1894
BstUI	CGCG	1 cut(s)	2144
BstV1I	GCAGC	7 cut(s)	272, 275, 736, 1876, 1908, 2064, 2299
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	2 cut(s)	68, 856
BstYI	RGATCY	2 cut(s)	68, 856
Bsu15I	ATCGAT	1 cut(s)	369
BsuI	GTATCC	4 cut(s)	1052, 1111, 2097, 2146
BsuRI	GGCC	3 cut(s)	929, 1314, 1620
BsuTUI	ATCGAT	1 cut(s)	369
BtgZI	GCGATG	2 cut(s)	1605, 1657
BtrI	CACGTC	1 cut(s)	314
BtsCI	GGATG	7 cut(s)	555, 639, 725, 1243, 1513, 2253, 2335
BtsI	GCAGTG	2 cut(s)	1576, 2072
BtsIMutI	CAGTG	5 cut(s)	1576, 1662, 2072, 2295, 2450
BveI	ACCTGC	2 cut(s)	331, 1667
Cac8I	GCNNGC	6 cut(s)	997, 1894, 2010, 2087, 2098, 2144
CaiI	CAGNNNCTG	1 cut(s)	1661
CciI	TCATGA	1 cut(s)	1003
CfoI	GCGC	3 cut(s)	1583, 2144, 2146
Cfr13I	GGNCC	1 cut(s)	412
Cfr9I	CCCGGG	1 cut(s)	422
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	3 cut(s)	316, 1555, 1913
Csp6I	GTAC	6 cut(s)	502, 680, 1147, 1883, 2237, 2476
CspCI	CAANNNNNGTGG	2 cut(s)	1974, 2009
CviQI	GTAC	6 cut(s)	502, 680, 1147, 1883, 2237, 2476
DdeI	CTNAG	8 cut(s)	629, 1356, 1395, 1488, 1813, 1974, 2205, 2401
DriI	GACNNNNNGTC	1 cut(s)	1923
EaeI	YGGCCR	1 cut(s)	1618
Eam1104I	CTCTTC	2 cut(s)	1689, 2370
Eam1105I	GACNNNNNGTC	1 cut(s)	1923
EarI	CTCTTC	2 cut(s)	1689, 2370
Eco24I	GRGCYC	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	1910
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	3 cut(s)	316, 1143, 1631
Eco88I	CYCGRG	3 cut(s)	422, 1022, 2090
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	3 cut(s)	1503, 2053, 2062
EcoT38I	GRGCYC	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	2364
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	2 cut(s)	425, 2228
FauI	CCCGC	3 cut(s)	149, 2001, 2373
FauNDI	CATATG	2 cut(s)	1264, 1789
FbaI	TGATCA	2 cut(s)	1944, 2040
Fnu4HI	GCNGC	7 cut(s)	261, 264, 725, 1890, 1897, 2078, 2313
FokI	GGATG	7 cut(s)	562, 646, 732, 1250, 1520, 2260, 2322
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	7 cut(s)	261, 264, 725, 1890, 1897, 2078, 2313
FspBI	CTAG	4 cut(s)	96, 825, 981, 1886
GlaI	GCGC	3 cut(s)	1582, 2143, 2145
GluI	GCNGC	7 cut(s)	261, 264, 725, 1890, 1897, 2078, 2313
GsaI	CCCAGC	1 cut(s)	2290
GsuI	CTGGAG	2 cut(s)	534, 2042
HaeIII	GGCC	3 cut(s)	929, 1314, 1620
HapII	CCGG	3 cut(s)	423, 662, 1920
HgaI	GACGC	3 cut(s)	316, 1555, 1913
HhaI	GCGC	3 cut(s)	1583, 2144, 2146
Hin1I	GRCGYC	3 cut(s)	327, 1547, 1924
Hin6I	GCGC	3 cut(s)	1581, 2142, 2144
HinP1I	GCGC	3 cut(s)	1581, 2142, 2144
HinfI	GANTC	8 cut(s)	1020, 1321, 1403, 1415, 1721, 1811, 1862, 2168
HpaII	CCGG	3 cut(s)	423, 662, 1920
HphI	GGTGA	5 cut(s)	676, 1864, 2138, 2318, 2354
Hpy166II	GTNNAC	4 cut(s)	504, 1149, 1996, 2293
Hpy188I	TCNGA	9 cut(s)	18, 104, 335, 1491, 1611, 1726, 1959, 2049, 2374
Hpy188III	TCNNGA	7 cut(s)	1004, 1024, 1056, 1096, 1576, 1598, 1688
Hpy8I	GTNNAC	4 cut(s)	504, 1149, 1996, 2293
Hpy99I	CGWCG	3 cut(s)	318, 1549, 2167
HpyAV	CCTTC	5 cut(s)	317, 944, 1294, 1304, 1841
HpyCH4III	ACNGT	6 cut(s)	186, 234, 478, 679, 1808, 2458
HpyCH4IV	ACGT	4 cut(s)	313, 1871, 2181, 2357
HpyF3I	CTNAG	8 cut(s)	629, 1356, 1395, 1488, 1813, 1974, 2205, 2401
HpySE526I	ACGT	4 cut(s)	313, 1871, 2181, 2357
Hsp92I	GRCGYC	3 cut(s)	327, 1547, 1924
HspAI	GCGC	3 cut(s)	1581, 2142, 2144
Ksp22I	TGATCA	2 cut(s)	1944, 2040
LguI	GCTCTTC	1 cut(s)	1689
LmnI	GCTCC	2 cut(s)	697, 828
Lsp1109I	GCAGC	7 cut(s)	272, 275, 736, 1876, 1908, 2064, 2299
LweI	GCATC	9 cut(s)	275, 1117, 1195, 1498, 1582, 1616, 2040, 2299, 2344
MaeI	CTAG	4 cut(s)	96, 825, 981, 1886
MaeII	ACGT	4 cut(s)	313, 1871, 2181, 2357
MaeIII	GTNAC	9 cut(s)	357, 376, 472, 664, 1042, 1258, 1285, 1657, 1808
MboII	GAAGA	9 cut(s)	322, 444, 1136, 1211, 1214, 1309, 1319, 1676, 2387
MflI	RGATCY	2 cut(s)	68, 856
MhlI	GDGCHC	3 cut(s)	228, 322, 1684
MlsI	TGGCCA	1 cut(s)	1620
MluCI	AATT	7 cut(s)	151, 432, 484, 582, 1133, 1555, 1823
MluNI	TGGCCA	1 cut(s)	1620
MlyI	GAGTC	6 cut(s)	1014, 1409, 1412, 1730, 1805, 2177
MmeI	TCCRAC	1 cut(s)	1419
Mox20I	TGGCCA	1 cut(s)	1620
MscI	TGGCCA	1 cut(s)	1620
MseI	TTAA	3 cut(s)	744, 1221, 1640
MslI	CAYNNNNRTG	2 cut(s)	791, 2112
Msp20I	TGGCCA	1 cut(s)	1620
MspI	CCGG	3 cut(s)	423, 662, 1920
MspR9I	CCNGG	6 cut(s)	423, 424, 1505, 1921, 2055, 2064
Mva1269I	GAATGC	3 cut(s)	784, 877, 1448
MvaI	CCWGG	3 cut(s)	1505, 2055, 2064
MvnI	CGCG	1 cut(s)	2144
NciI	CCSGG	3 cut(s)	423, 424, 1921
NdeI	CATATG	2 cut(s)	1264, 1789
NlaIV	GGNNCC	3 cut(s)	413, 2160, 2323
NmeAIII	GCCGAG	1 cut(s)	303
NmuCI	GTSAC	5 cut(s)	357, 664, 1042, 1657, 1808
NspI	RCATGY	6 cut(s)	198, 1073, 1696, 2002, 2100, 2482
NspV	TTCGAA	1 cut(s)	1106
PaeI	GCATGC	1 cut(s)	2100
PagI	TCATGA	1 cut(s)	1003
PaqCI	CACCTGC	1 cut(s)	1667
PauI	GCGCGC	1 cut(s)	2142
PciI	ACATGT	3 cut(s)	1692, 1998, 2478
PciSI	GCTCTTC	1 cut(s)	1689
PcsI	WCGNNNNNNNCGW	2 cut(s)	1103, 2354
PctI	GAATGC	3 cut(s)	784, 877, 1448
PfeI	GAWTC	2 cut(s)	1321, 1862
PflFI	GACNNNGTC	1 cut(s)	2167
PkrI	GCNGC	7 cut(s)	262, 265, 726, 1891, 1898, 2079, 2314
Ple19I	CGATCG	1 cut(s)	1159
PleI	GAGTC	6 cut(s)	1014, 1409, 1411, 1729, 1805, 2176
PpsI	GAGTC	6 cut(s)	1014, 1409, 1411, 1729, 1805, 2176
Ppu21I	YACGTR	1 cut(s)	2182
PpuMI	RGGWCCY	1 cut(s)	412
PscI	ACATGT	3 cut(s)	1692, 1998, 2478
PsiI	TTATAA	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	3 cut(s)	1503, 2053, 2062
PspFI	CCCAGC	1 cut(s)	2286
PspGI	CCWGG	3 cut(s)	1503, 2053, 2062
PspN4I	GGNNCC	3 cut(s)	413, 2160, 2323
PspPI	GGNCC	1 cut(s)	412
PspPPI	RGGWCCY	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	1898
PstNI	CAGNNNCTG	1 cut(s)	1661
PsuI	RGATCY	2 cut(s)	68, 856
PsyI	GACNNNGTC	1 cut(s)	2167
PteI	GCGCGC	1 cut(s)	2142
PvuI	CGATCG	1 cut(s)	1159
RsaI	GTAC	6 cut(s)	503, 681, 1148, 1884, 2238, 2477
RsaNI	GTAC	6 cut(s)	502, 680, 1147, 1883, 2237, 2476
RseI	CAYNNNNRTG	2 cut(s)	791, 2112
SapI	GCTCTTC	1 cut(s)	1689
SaqAI	TTAA	3 cut(s)	744, 1221, 1640
SatI	GCNGC	7 cut(s)	261, 264, 725, 1890, 1897, 2078, 2313
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	6 cut(s)	1014, 1409, 1412, 1730, 1805, 2177
ScrFI	CCNGG	6 cut(s)	423, 424, 1505, 1921, 2055, 2064
SduI	GDGCHC	3 cut(s)	228, 322, 1684
SfaNI	GCATC	9 cut(s)	275, 1117, 1195, 1498, 1582, 1616, 2040, 2299, 2344
SfcI	CTRYAG	2 cut(s)	1191, 1894
SfuI	TTCGAA	1 cut(s)	1106
SinI	GGWCC	1 cut(s)	412
SmaI	CCCGGG	1 cut(s)	424
SmiMI	CAYNNNNRTG	2 cut(s)	791, 2112
SmlI	CTYRAG	1 cut(s)	1576
SmoI	CTYRAG	1 cut(s)	1576
SpeI	ACTAGT	1 cut(s)	980
SphI	GCATGC	1 cut(s)	2100
Sse9I	AATT	7 cut(s)	151, 432, 484, 582, 1133, 1555, 1823
SspMI	CTAG	4 cut(s)	96, 825, 981, 1886
StyD4I	CCNGG	6 cut(s)	421, 422, 1503, 1919, 2053, 2062
TaaI	ACNGT	6 cut(s)	186, 234, 478, 679, 1808, 2458
TaiI	ACGT	4 cut(s)	316, 1874, 2184, 2360
TaqI	TCGA	9 cut(s)	169, 237, 316, 369, 602, 1097, 1106, 1431, 1830
TasI	AATT	7 cut(s)	151, 432, 484, 582, 1133, 1555, 1823
TatI	WGTACW	4 cut(s)	501, 1146, 1882, 2475
TfiI	GAWTC	2 cut(s)	1321, 1862
Tru1I	TTAA	3 cut(s)	744, 1221, 1640
Tru9I	TTAA	3 cut(s)	744, 1221, 1640
TscAI	CASTG	5 cut(s)	1576, 1662, 2079, 2302, 2457
TseFI	GTSAC	5 cut(s)	357, 664, 1042, 1657, 1808
TseI	GCWGC	7 cut(s)	260, 263, 724, 1889, 1896, 2077, 2312
Tsp45I	GTSAC	5 cut(s)	357, 664, 1042, 1657, 1808
TspGWI	ACGGA	5 cut(s)	1077, 1341, 2180, 2254, 2328
TspMI	CCCGGG	1 cut(s)	422
TspRI	CASTG	5 cut(s)	1576, 1662, 2079, 2302, 2457
Tth111I	GACNNNGTC	1 cut(s)	2167
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	3 cut(s)	151, 432, 484
XceI	RCATGY	6 cut(s)	198, 1073, 1696, 2002, 2100, 2482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2146
XmaI	CCCGGG	1 cut(s)	422
XspI	CTAG	4 cut(s)	96, 825, 981, 1886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.